RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 ADGRL1O94910 1474 aa23.6■■□□□ 1.37
HDAC4-204ENST00000446876 TIAM1Q13009 1591 aa23.6■■□□□ 1.37
HDAC4-204ENST00000446876 EHBP1L1Q8N3D4 1523 aa23.59■■□□□ 1.37
HDAC4-204ENST00000446876 EFCAB2Q5VUJ9 269 aa23.57■■□□□ 1.36
HDAC4-204ENST00000446876 SCAPERQ9BY12 1400 aa23.56■■□□□ 1.36
HDAC4-204ENST00000446876 GPATCH8Q9UKJ3 1502 aaKnown RBP23.53■■□□□ 1.36
HDAC4-204ENST00000446876 POGZQ7Z3K3 1410 aa23.52■■□□□ 1.36
HDAC4-204ENST00000446876 ZMYM4Q5VZL5 1548 aa23.5■■□□□ 1.35
HDAC4-204ENST00000446876 ABCC1P33527 1531 aa23.49■■□□□ 1.35
HDAC4-204ENST00000446876 ITSN2Q9NZM3 1697 aa23.49■■□□□ 1.35
HDAC4-204ENST00000446876 SUPT6HQ7KZ85 1726 aaKnown RBP23.49■■□□□ 1.35
HDAC4-204ENST00000446876 CCNB3Q8WWL7 1395 aa23.49■■□□□ 1.35
HDAC4-204ENST00000446876 ARHGEF40Q8TER5 1519 aa23.49■■□□□ 1.35
HDAC4-204ENST00000446876 SAMD9LQ8IVG5 1584 aa23.48■■□□□ 1.35
HDAC4-204ENST00000446876 KDM4FA0A1W2PPD8 638 aa23.48■■□□□ 1.35
HDAC4-204ENST00000446876 LRRC9Q6ZRR7 1453 aa23.47■■□□□ 1.35
HDAC4-204ENST00000446876 ARHGEF12Q9NZN5 1544 aa23.46■■□□□ 1.35
HDAC4-204ENST00000446876 NCOA2Q15596 1464 aa23.45■■□□□ 1.34
HDAC4-204ENST00000446876 ZNF777Q9ULD5 760 aaPredicted RBP23.45■■□□□ 1.34
HDAC4-204ENST00000446876 MAP3K1Q13233 1512 aa23.44■■□□□ 1.34
HDAC4-204ENST00000446876 ZFYVE16Q7Z3T8 1539 aa23.44■■□□□ 1.34
HDAC4-204ENST00000446876 YEATS2Q9ULM3 1422 aa23.44■■□□□ 1.34
HDAC4-204ENST00000446876 AEBP2Q6ZN18 517 aaPredicted RBP23.44■■□□□ 1.34
HDAC4-204ENST00000446876 KANK4Q5T7N3 995 aaPredicted RBP23.43■■□□□ 1.34
HDAC4-204ENST00000446876 ZNF518AQ6AHZ1 1483 aa23.43■■□□□ 1.34
HDAC4-204ENST00000446876 KDM5CP41229 1560 aa23.42■■□□□ 1.34
HDAC4-204ENST00000446876 SYCP2Q9BX26 1530 aa23.42■■□□□ 1.34
HDAC4-204ENST00000446876 TRAPPC8Q9Y2L5 1435 aa23.42■■□□□ 1.34
HDAC4-204ENST00000446876 AFAP1Q8N556 730 aa23.41■■□□□ 1.34
HDAC4-204ENST00000446876 CFDP1Q9UEE9 299 aaPredicted RBP23.41■■□□□ 1.34
HDAC4-204ENST00000446876 SIGLEC1Q9BZZ2 1709 aa23.39■■□□□ 1.34
HDAC4-204ENST00000446876 MAGI2Q86UL8 1455 aa23.38■■□□□ 1.33
HDAC4-204ENST00000446876 HECW2Q9P2P5 1572 aa23.38■■□□□ 1.33
HDAC4-204ENST00000446876 ZNF644Q9H582 1327 aaPredicted RBP23.34■■□□□ 1.33
HDAC4-204ENST00000446876 APLP2Q06481 763 aa23.34■■□□□ 1.33
HDAC4-204ENST00000446876 ABCA6Q8N139 1617 aa23.33■■□□□ 1.33
HDAC4-204ENST00000446876 HNRNPMP52272 730 aaKnown RBP eCLIP23.33■■□□□ 1.331e-6■■■■□ 25.2
HDAC4-204ENST00000446876 DIP2CQ9Y2E4 1556 aa23.32■■□□□ 1.32
HDAC4-204ENST00000446876 PLEKHH2Q8IVE3 1493 aa23.32■■□□□ 1.32
HDAC4-204ENST00000446876 BCORL1Q5H9F3 1711 aa23.32■■□□□ 1.32
HDAC4-204ENST00000446876 ARID4BQ4LE39 1312 aaPredicted RBP23.32■■□□□ 1.32
HDAC4-204ENST00000446876 MYT1LQ9UL68 1186 aa23.31■■□□□ 1.32
HDAC4-204ENST00000446876 KIDINS220Q9ULH0 1771 aa23.31■■□□□ 1.32
HDAC4-204ENST00000446876 KIAA1107Q9UPP5 1409 aa23.3■■□□□ 1.32
HDAC4-204ENST00000446876 ATP10AO60312 1499 aa23.3■■□□□ 1.32
HDAC4-204ENST00000446876 MLH3Q9UHC1 1453 aa23.3■■□□□ 1.32
HDAC4-204ENST00000446876 ADAMTSL3P82987 1691 aa23.29■■□□□ 1.32
HDAC4-204ENST00000446876 CAMSAP2Q08AD1 1489 aa23.29■■□□□ 1.32
HDAC4-204ENST00000446876 C9orf84Q5VXU9 1444 aa23.28■■□□□ 1.32
HDAC4-204ENST00000446876 MADDQ8WXG6 1647 aa23.26■■□□□ 1.31
HDAC4-204ENST00000446876 MBD5Q9P267 1494 aa23.25■■□□□ 1.31
HDAC4-204ENST00000446876 INO80Q9ULG1 1556 aaPredicted RBP23.25■■□□□ 1.31
HDAC4-204ENST00000446876 MYOM3Q5VTT5 1437 aa23.24■■□□□ 1.31
HDAC4-204ENST00000446876 ATP7AQ04656 1500 aa23.23■■□□□ 1.31
HDAC4-204ENST00000446876 SPAG9O60271 1321 aaKnown RBP23.22■■□□□ 1.31
HDAC4-204ENST00000446876 RIMS1Q86UR5 1692 aaKnown RBP23.2■■□□□ 1.3
HDAC4-204ENST00000446876 REREQ9P2R6 1566 aa23.2■■□□□ 1.3
HDAC4-204ENST00000446876 MLECQ14165 292 aa23.2■■□□□ 1.3
HDAC4-204ENST00000446876 CCDC141Q6ZP82 1450 aa23.17■■□□□ 1.3
HDAC4-204ENST00000446876 FER1L4A9Z1Z3 1794 aa23.17■■□□□ 1.3
HDAC4-204ENST00000446876 ARHGEF5Q12774 1597 aa23.16■■□□□ 1.3
HDAC4-204ENST00000446876 MIA2Q96PC5 1412 aa23.16■■□□□ 1.3
HDAC4-204ENST00000446876 PTPRMP28827 1452 aa23.14■■□□□ 1.29
HDAC4-204ENST00000446876 PTPN23Q9H3S7 1636 aa23.14■■□□□ 1.29
HDAC4-204ENST00000446876 ADGBQ8N7X0 1667 aa23.13■■□□□ 1.29
HDAC4-204ENST00000446876 AGLP35573 1532 aa23.12■■□□□ 1.29
HDAC4-204ENST00000446876 PLXNC1O60486 1568 aa23.1■■□□□ 1.29
HDAC4-204ENST00000446876 FGD6Q6ZV73 1430 aa23.1■■□□□ 1.29
HDAC4-204ENST00000446876 A2MP01023 1474 aa23.09■■□□□ 1.29
HDAC4-204ENST00000446876 RTEL1-TNFRSF6BF6WH68 1400 aa23.08■■□□□ 1.29
HDAC4-204ENST00000446876 PPARGC1BQ86YN6 1023 aaKnown RBP23.07■■□□□ 1.28
HDAC4-204ENST00000446876 CROCC2H7BZ55 1655 aa23.06■■□□□ 1.28
HDAC4-204ENST00000446876 TCOF1Q13428 1488 aaKnown RBP23.05■■□□□ 1.28
HDAC4-204ENST00000446876 RSPH4AQ5TD94 716 aa23.05■■□□□ 1.28
HDAC4-204ENST00000446876 PLPPR3Q6T4P5 718 aa23.05■■□□□ 1.28
HDAC4-204ENST00000446876 MAST1Q9Y2H9 1570 aa23.04■■□□□ 1.28
HDAC4-204ENST00000446876 DNMT1P26358 1616 aaKnown RBP23.01■■□□□ 1.27
HDAC4-204ENST00000446876 TSPY4P0CV99 314 aa23.01■■□□□ 1.27
HDAC4-204ENST00000446876 TSPY10P0CW01 314 aa23.01■■□□□ 1.27
HDAC4-204ENST00000446876 ABCC5O15440 1437 aa22.99■■□□□ 1.27
HDAC4-204ENST00000446876 DHX29Q7Z478 1369 aaKnown RBP22.98■■□□□ 1.27
HDAC4-204ENST00000446876 DAPK1P53355 1430 aa22.98■■□□□ 1.27
HDAC4-204ENST00000446876 C3P01024 1663 aa22.95■■□□□ 1.26
HDAC4-204ENST00000446876 SHANK2Q9UPX8 1470 aa22.95■■□□□ 1.26
HDAC4-204ENST00000446876 CLTCQ00610 1675 aaKnown RBP22.94■■□□□ 1.26
HDAC4-204ENST00000446876 CEBPAP49715 358 aaPredicted RBP22.94■■□□□ 1.26
HDAC4-204ENST00000446876 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
HDAC4-204ENST00000446876 GGT6Q6P531 493 aa22.92■■□□□ 1.26
HDAC4-204ENST00000446876 KIF3BO15066 747 aa22.9■■□□□ 1.26
HDAC4-204ENST00000446876 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
HDAC4-204ENST00000446876 MROH2AA6NES4 1674 aa22.9■■□□□ 1.26
HDAC4-204ENST00000446876 CHIC2Q9UKJ5 165 aa22.88■■□□□ 1.25
HDAC4-204ENST00000446876 CNTLNQ9NXG0 1405 aa22.88■■□□□ 1.25
HDAC4-204ENST00000446876 KIF15Q9NS87 1388 aa22.87■■□□□ 1.25
HDAC4-204ENST00000446876 DUOX2Q9NRD8 1548 aa22.87■■□□□ 1.25
HDAC4-204ENST00000446876 EIF2AK4Q9P2K8 1649 aaKnown RBP22.86■■□□□ 1.25
HDAC4-204ENST00000446876 LMTK3Q96Q04 1460 aa22.86■■□□□ 1.25
HDAC4-204ENST00000446876 RRP7BPQ9NSQ0 103 aa22.85■■□□□ 1.25
HDAC4-204ENST00000446876 RNF17Q9BXT8 1623 aaKnown RBP22.85■■□□□ 1.25
HDAC4-204ENST00000446876 PREX1Q8TCU6 1659 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms