RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 DENND4BO75064 1496 aaPredicted RBP29.39■■■□□ 2.3
SHH-204ENST00000441114 ADGRL1O94910 1474 aa29.39■■■□□ 2.3
SHH-204ENST00000441114 APLP2Q06481 763 aa29.38■■■□□ 2.29
SHH-204ENST00000441114 CCNB3Q8WWL7 1395 aa29.37■■■□□ 2.29
SHH-204ENST00000441114 SCAPERQ9BY12 1400 aa29.37■■■□□ 2.29
SHH-204ENST00000441114 FRMPD1Q5SYB0 1578 aa29.36■■■□□ 2.29
SHH-204ENST00000441114 RICTORQ6R327 1708 aa29.35■■■□□ 2.29
SHH-204ENST00000441114 SUPT6HQ7KZ85 1726 aaKnown RBP29.34■■■□□ 2.29
SHH-204ENST00000441114 ZNF777Q9ULD5 760 aaPredicted RBP29.34■■■□□ 2.29
SHH-204ENST00000441114 GPATCH8Q9UKJ3 1502 aaKnown RBP29.34■■■□□ 2.29
SHH-204ENST00000441114 KANK4Q5T7N3 995 aaPredicted RBP29.33■■■□□ 2.29
SHH-204ENST00000441114 LRRC9Q6ZRR7 1453 aa29.33■■■□□ 2.29
SHH-204ENST00000441114 MAP3K1Q13233 1512 aa29.33■■■□□ 2.29
SHH-204ENST00000441114 NCOA2Q15596 1464 aa29.29■■■□□ 2.28
SHH-204ENST00000441114 CFDP1Q9UEE9 299 aaPredicted RBP29.28■■■□□ 2.28
SHH-204ENST00000441114 ITSN2Q9NZM3 1697 aa29.26■■■□□ 2.27
SHH-204ENST00000441114 POGZQ7Z3K3 1410 aa29.25■■■□□ 2.27
SHH-204ENST00000441114 SAMD9LQ8IVG5 1584 aa29.24■■■□□ 2.27
SHH-204ENST00000441114 ABCC1P33527 1531 aa29.23■■■□□ 2.27
SHH-204ENST00000441114 AFAP1Q8N556 730 aa29.21■■■□□ 2.27
SHH-204ENST00000441114 ARHGEF12Q9NZN5 1544 aa29.2■■■□□ 2.27
SHH-204ENST00000441114 MYT1LQ9UL68 1186 aa29.19■■■□□ 2.26
SHH-204ENST00000441114 ZMYM4Q5VZL5 1548 aa29.19■■■□□ 2.26
SHH-204ENST00000441114 ZNF518AQ6AHZ1 1483 aa29.17■■■□□ 2.26
SHH-204ENST00000441114 HNRNPMP52272 730 aaKnown RBP eCLIP29.17■■■□□ 2.26
SHH-204ENST00000441114 TRAPPC8Q9Y2L5 1435 aa29.17■■■□□ 2.26
SHH-204ENST00000441114 SYCP2Q9BX26 1530 aa29.16■■■□□ 2.26
SHH-204ENST00000441114 ZNF644Q9H582 1327 aaPredicted RBP29.16■■■□□ 2.26
SHH-204ENST00000441114 ZFYVE16Q7Z3T8 1539 aa29.15■■■□□ 2.26
SHH-204ENST00000441114 YEATS2Q9ULM3 1422 aa29.14■■■□□ 2.26
SHH-204ENST00000441114 ARHGEF40Q8TER5 1519 aa29.14■■■□□ 2.25
SHH-204ENST00000441114 MAGI2Q86UL8 1455 aa29.11■■■□□ 2.25
SHH-204ENST00000441114 PLEKHH2Q8IVE3 1493 aa29.11■■■□□ 2.25
SHH-204ENST00000441114 KDM5CP41229 1560 aa29.11■■■□□ 2.25
SHH-204ENST00000441114 KDM4FA0A1W2PPD8 638 aa29.11■■■□□ 2.25
SHH-204ENST00000441114 AEBP2Q6ZN18 517 aaPredicted RBP29.11■■■□□ 2.25
SHH-204ENST00000441114 ARID4BQ4LE39 1312 aaPredicted RBP29.08■■■□□ 2.25
SHH-204ENST00000441114 HECW2Q9P2P5 1572 aa29.08■■■□□ 2.25
SHH-204ENST00000441114 KIAA1107Q9UPP5 1409 aa29.07■■■□□ 2.24
SHH-204ENST00000441114 CAMSAP2Q08AD1 1489 aa29.05■■■□□ 2.24
SHH-204ENST00000441114 MYOM3Q5VTT5 1437 aa29.03■■■□□ 2.24
SHH-204ENST00000441114 MLH3Q9UHC1 1453 aa29.02■■■□□ 2.24
SHH-204ENST00000441114 ATP10AO60312 1499 aa29.01■■■□□ 2.23
SHH-204ENST00000441114 KIDINS220Q9ULH0 1771 aa29.01■■■□□ 2.23
SHH-204ENST00000441114 SPAG9O60271 1321 aaKnown RBP29■■■□□ 2.23
SHH-204ENST00000441114 PPARGC1BQ86YN6 1023 aaKnown RBP29■■■□□ 2.23
SHH-204ENST00000441114 SIGLEC1Q9BZZ2 1709 aa29■■■□□ 2.23
SHH-204ENST00000441114 ABCA6Q8N139 1617 aa28.99■■■□□ 2.23
SHH-204ENST00000441114 MBD5Q9P267 1494 aa28.98■■■□□ 2.23
SHH-204ENST00000441114 DIP2CQ9Y2E4 1556 aa28.98■■■□□ 2.23
SHH-204ENST00000441114 C9orf84Q5VXU9 1444 aa28.96■■■□□ 2.23
SHH-204ENST00000441114 MIA2Q96PC5 1412 aa28.95■■■□□ 2.23
SHH-204ENST00000441114 BCORL1Q5H9F3 1711 aa28.94■■■□□ 2.22
SHH-204ENST00000441114 MLECQ14165 292 aa28.93■■■□□ 2.22
SHH-204ENST00000441114 ATP7AQ04656 1500 aa28.93■■■□□ 2.22
SHH-204ENST00000441114 INO80Q9ULG1 1556 aaPredicted RBP28.92■■■□□ 2.22
SHH-204ENST00000441114 CCDC141Q6ZP82 1450 aa28.91■■■□□ 2.22
SHH-204ENST00000441114 PTPN23Q9H3S7 1636 aa28.91■■■□□ 2.22
SHH-204ENST00000441114 ARHGEF5Q12774 1597 aa28.88■■■□□ 2.21
SHH-204ENST00000441114 RSPH4AQ5TD94 716 aa28.88■■■□□ 2.21
SHH-204ENST00000441114 ADAMTSL3P82987 1691 aa28.88■■■□□ 2.21
SHH-204ENST00000441114 FGD6Q6ZV73 1430 aa28.87■■■□□ 2.21
SHH-204ENST00000441114 TSPY4P0CV99 314 aa28.85■■■□□ 2.21
SHH-204ENST00000441114 TSPY10P0CW01 314 aa28.85■■■□□ 2.21
SHH-204ENST00000441114 REREQ9P2R6 1566 aa28.84■■■□□ 2.21
SHH-204ENST00000441114 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
SHH-204ENST00000441114 RTEL1-TNFRSF6BF6WH68 1400 aa28.8■■■□□ 2.2
SHH-204ENST00000441114 ADGBQ8N7X0 1667 aa28.8■■■□□ 2.2
SHH-204ENST00000441114 RIMS1Q86UR5 1692 aaKnown RBP28.79■■■□□ 2.2
SHH-204ENST00000441114 A2MP01023 1474 aa28.78■■■□□ 2.2
SHH-204ENST00000441114 TCOF1Q13428 1488 aaKnown RBP28.78■■■□□ 2.2
SHH-204ENST00000441114 FAM50AQ14320 339 aaKnown RBP28.78■■■□□ 2.2
SHH-204ENST00000441114 FER1L4A9Z1Z3 1794 aa28.77■■■□□ 2.2
SHH-204ENST00000441114 AGLP35573 1532 aa28.75■■■□□ 2.19
SHH-204ENST00000441114 PLPPR3Q6T4P5 718 aa28.74■■■□□ 2.19
SHH-204ENST00000441114 CROCC2H7BZ55 1655 aa28.73■■■□□ 2.19
SHH-204ENST00000441114 MAST1Q9Y2H9 1570 aa28.72■■■□□ 2.19
SHH-204ENST00000441114 DNMT1P26358 1616 aaKnown RBP28.72■■■□□ 2.19
SHH-204ENST00000441114 PTPRMP28827 1452 aa28.72■■■□□ 2.19
SHH-204ENST00000441114 ABCC5O15440 1437 aa28.71■■■□□ 2.19
SHH-204ENST00000441114 PLXNC1O60486 1568 aa28.71■■■□□ 2.19
SHH-204ENST00000441114 DAPK1P53355 1430 aa28.7■■■□□ 2.19
SHH-204ENST00000441114 DHX29Q7Z478 1369 aaKnown RBP28.68■■■□□ 2.18
SHH-204ENST00000441114 CHIC2Q9UKJ5 165 aa28.66■■■□□ 2.18
SHH-204ENST00000441114 GGT6Q6P531 493 aa28.65■■■□□ 2.18
SHH-204ENST00000441114 ESF1Q9H501 851 aaKnown RBP28.65■■■□□ 2.18
SHH-204ENST00000441114 SHANK2Q9UPX8 1470 aa28.63■■■□□ 2.17
SHH-204ENST00000441114 KIF3BO15066 747 aa28.61■■■□□ 2.17
SHH-204ENST00000441114 RRP7BPQ9NSQ0 103 aa28.61■■■□□ 2.17
SHH-204ENST00000441114 CEBPAP49715 358 aaPredicted RBP28.58■■■□□ 2.17
SHH-204ENST00000441114 ITGAEP38570 1179 aa28.57■■■□□ 2.16
SHH-204ENST00000441114 KIF15Q9NS87 1388 aa28.55■■■□□ 2.16
SHH-204ENST00000441114 CLTCQ00610 1675 aaKnown RBP28.54■■■□□ 2.16
SHH-204ENST00000441114 ANKRD30AQ9BXX3 1397 aa28.54■■■□□ 2.16
SHH-204ENST00000441114 DUOX2Q9NRD8 1548 aa28.53■■■□□ 2.16
SHH-204ENST00000441114 C3P01024 1663 aa28.51■■■□□ 2.16
SHH-204ENST00000441114 CNTLNQ9NXG0 1405 aa28.5■■■□□ 2.15
SHH-204ENST00000441114 PTPRKQ15262 1439 aa28.49■■■□□ 2.15
SHH-204ENST00000441114 EIF2AK4Q9P2K8 1649 aaKnown RBP28.48■■■□□ 2.15
SHH-204ENST00000441114 NCOA1Q15788 1441 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms