RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 ARID4BQ4LE39 1312 aaPredicted RBP31.94■■■□□ 2.7
SHROOM1-204ENST00000440118 ZFYVE16Q7Z3T8 1539 aa31.93■■■□□ 2.7
SHROOM1-204ENST00000440118 CEP162Q5TB80 1403 aa31.92■■■□□ 2.7
SHROOM1-204ENST00000440118 POGZQ7Z3K3 1410 aa31.92■■■□□ 2.7
SHROOM1-204ENST00000440118 PREX2Q70Z35 1606 aa31.91■■■□□ 2.7
SHROOM1-204ENST00000440118 CDC42BPBQ9Y5S2 1711 aa31.9■■■□□ 2.7
SHROOM1-204ENST00000440118 BCORL1Q5H9F3 1711 aa31.86■■■□□ 2.69
SHROOM1-204ENST00000440118 MAGI2Q86UL8 1455 aa31.85■■■□□ 2.69
SHROOM1-204ENST00000440118 CDC42BPAQ5VT25 1732 aa31.84■■■□□ 2.69
SHROOM1-204ENST00000440118 ADAMTSL3P82987 1691 aa31.84■■■□□ 2.69
SHROOM1-204ENST00000440118 ZNF518AQ6AHZ1 1483 aa31.81■■■□□ 2.68
SHROOM1-204ENST00000440118 YEATS2Q9ULM3 1422 aa31.81■■■□□ 2.68
SHROOM1-204ENST00000440118 MADDQ8WXG6 1647 aa31.78■■■□□ 2.68
SHROOM1-204ENST00000440118 MYT1LQ9UL68 1186 aa31.77■■■□□ 2.68
SHROOM1-204ENST00000440118 MTUS2Q5JR59 1369 aa31.77■■■□□ 2.68
SHROOM1-204ENST00000440118 ITSN2Q9NZM3 1697 aa31.76■■■□□ 2.67
SHROOM1-204ENST00000440118 ABCC1P33527 1531 aa31.75■■■□□ 2.67
SHROOM1-204ENST00000440118 HECW2Q9P2P5 1572 aa31.73■■■□□ 2.67
SHROOM1-204ENST00000440118 RIMS1Q86UR5 1692 aaKnown RBP31.73■■■□□ 2.67
SHROOM1-204ENST00000440118 KDM5CP41229 1560 aa31.73■■■□□ 2.67
SHROOM1-204ENST00000440118 PTPRMP28827 1452 aa31.72■■■□□ 2.67
SHROOM1-204ENST00000440118 SIGLEC1Q9BZZ2 1709 aa31.7■■■□□ 2.67
SHROOM1-204ENST00000440118 EHBP1L1Q8N3D4 1523 aa31.7■■■□□ 2.66
SHROOM1-204ENST00000440118 LOC105371045A0A1W2PR82 267 aa31.69■■■□□ 2.66
SHROOM1-204ENST00000440118 C9orf84Q5VXU9 1444 aa31.68■■■□□ 2.66
SHROOM1-204ENST00000440118 ATP10AO60312 1499 aa31.68■■■□□ 2.66
SHROOM1-204ENST00000440118 ZNF777Q9ULD5 760 aaPredicted RBP31.68■■■□□ 2.66
SHROOM1-204ENST00000440118 AFAP1Q8N556 730 aa31.67■■■□□ 2.66
SHROOM1-204ENST00000440118 CCNB3Q8WWL7 1395 aa31.66■■■□□ 2.66
SHROOM1-204ENST00000440118 FER1L4A9Z1Z3 1794 aa31.65■■■□□ 2.66
SHROOM1-204ENST00000440118 GPATCH8Q9UKJ3 1502 aaKnown RBP31.65■■■□□ 2.66
SHROOM1-204ENST00000440118 SAMD9LQ8IVG5 1584 aa31.64■■■□□ 2.65
SHROOM1-204ENST00000440118 MLECQ14165 292 aa31.63■■■□□ 2.65
SHROOM1-204ENST00000440118 ARHGEF12Q9NZN5 1544 aa31.61■■■□□ 2.65
SHROOM1-204ENST00000440118 DIP2CQ9Y2E4 1556 aa31.6■■■□□ 2.65
SHROOM1-204ENST00000440118 SYCP2Q9BX26 1530 aa31.6■■■□□ 2.65
SHROOM1-204ENST00000440118 TRAPPC8Q9Y2L5 1435 aa31.6■■■□□ 2.65
SHROOM1-204ENST00000440118 ABCA6Q8N139 1617 aa31.6■■■□□ 2.65
SHROOM1-204ENST00000440118 CFDP1Q9UEE9 299 aaPredicted RBP31.58■■■□□ 2.65
SHROOM1-204ENST00000440118 MLH3Q9UHC1 1453 aa31.58■■■□□ 2.65
SHROOM1-204ENST00000440118 VPS8Q8N3P4 1428 aa31.57■■■□□ 2.64
SHROOM1-204ENST00000440118 TIAM1Q13009 1591 aa31.56■■■□□ 2.64
SHROOM1-204ENST00000440118 SUPT6HQ7KZ85 1726 aaKnown RBP31.56■■■□□ 2.64
SHROOM1-204ENST00000440118 PLPPR3Q6T4P5 718 aa31.56■■■□□ 2.64
SHROOM1-204ENST00000440118 PLEKHH2Q8IVE3 1493 aa31.55■■■□□ 2.64
SHROOM1-204ENST00000440118 KIDINS220Q9ULH0 1771 aa31.52■■■□□ 2.64
SHROOM1-204ENST00000440118 REREQ9P2R6 1566 aa31.51■■■□□ 2.64
SHROOM1-204ENST00000440118 HNRNPMP52272 730 aaKnown RBP eCLIP31.46■■■□□ 2.63
SHROOM1-204ENST00000440118 KIAA1107Q9UPP5 1409 aa31.46■■■□□ 2.63
SHROOM1-204ENST00000440118 SPAG9O60271 1321 aaKnown RBP31.45■■■□□ 2.62
SHROOM1-204ENST00000440118 NCOA2Q15596 1464 aa31.44■■■□□ 2.62
SHROOM1-204ENST00000440118 ATP7AQ04656 1500 aa31.43■■■□□ 2.62
SHROOM1-204ENST00000440118 INO80Q9ULG1 1556 aaPredicted RBP31.4■■■□□ 2.62
SHROOM1-204ENST00000440118 AGLP35573 1532 aa31.39■■■□□ 2.61
SHROOM1-204ENST00000440118 ESF1Q9H501 851 aaKnown RBP31.37■■■□□ 2.61
SHROOM1-204ENST00000440118 LRRC9Q6ZRR7 1453 aa31.37■■■□□ 2.61
SHROOM1-204ENST00000440118 LMTK3Q96Q04 1460 aa31.34■■■□□ 2.61
SHROOM1-204ENST00000440118 ZNF644Q9H582 1327 aaPredicted RBP31.34■■■□□ 2.61
SHROOM1-204ENST00000440118 CAMSAP2Q08AD1 1489 aa31.33■■■□□ 2.61
SHROOM1-204ENST00000440118 ADGBQ8N7X0 1667 aa31.32■■■□□ 2.6
SHROOM1-204ENST00000440118 MAP3K1Q13233 1512 aa31.31■■■□□ 2.6
SHROOM1-204ENST00000440118 PREX1Q8TCU6 1659 aa31.29■■■□□ 2.6
SHROOM1-204ENST00000440118 APLP2Q06481 763 aa31.28■■■□□ 2.6
SHROOM1-204ENST00000440118 A2MP01023 1474 aa31.27■■■□□ 2.6
SHROOM1-204ENST00000440118 CCDC141Q6ZP82 1450 aa31.26■■■□□ 2.59
SHROOM1-204ENST00000440118 MBD5Q9P267 1494 aa31.26■■■□□ 2.59
SHROOM1-204ENST00000440118 C3P01024 1663 aa31.25■■■□□ 2.59
SHROOM1-204ENST00000440118 PLXNC1O60486 1568 aa31.25■■■□□ 2.59
SHROOM1-204ENST00000440118 CEBPAP49715 358 aaPredicted RBP31.24■■■□□ 2.59
SHROOM1-204ENST00000440118 CNTLNQ9NXG0 1405 aa31.22■■■□□ 2.59
SHROOM1-204ENST00000440118 KANK4Q5T7N3 995 aaPredicted RBP31.19■■■□□ 2.58
SHROOM1-204ENST00000440118 HSPA2P54652 639 aa31.18■■■□□ 2.58
SHROOM1-204ENST00000440118 ARHGEF5Q12774 1597 aa31.17■■■□□ 2.58
SHROOM1-204ENST00000440118 RTEL1-TNFRSF6BF6WH68 1400 aa31.17■■■□□ 2.58
SHROOM1-204ENST00000440118 MROH2AA6NES4 1674 aa31.17■■■□□ 2.58
SHROOM1-204ENST00000440118 SETD1BQ9UPS6 1966 aaKnown RBP31.17■■■□□ 2.58
SHROOM1-204ENST00000440118 ILDR1Q86SU0 546 aaPredicted RBP31.16■■■□□ 2.58
SHROOM1-204ENST00000440118 CLTCQ00610 1675 aaKnown RBP31.16■■■□□ 2.58
SHROOM1-204ENST00000440118 RSPH4AQ5TD94 716 aa31.15■■■□□ 2.58
SHROOM1-204ENST00000440118 MYOM3Q5VTT5 1437 aa31.14■■■□□ 2.58
SHROOM1-204ENST00000440118 UHRF1BP1Q6BDS2 1440 aa31.14■■■□□ 2.58
SHROOM1-204ENST00000440118 GGT6Q6P531 493 aa31.1■■■□□ 2.57
SHROOM1-204ENST00000440118 TSPY4P0CV99 314 aa31.09■■■□□ 2.57
SHROOM1-204ENST00000440118 TSPY10P0CW01 314 aa31.09■■■□□ 2.57
SHROOM1-204ENST00000440118 MIA2Q96PC5 1412 aa31.08■■■□□ 2.57
SHROOM1-204ENST00000440118 DHX29Q7Z478 1369 aaKnown RBP31.05■■■□□ 2.56
SHROOM1-204ENST00000440118 ZMYM3Q14202 1370 aa31.01■■■□□ 2.55
SHROOM1-204ENST00000440118 MAST1Q9Y2H9 1570 aa31■■■□□ 2.55
SHROOM1-204ENST00000440118 PTPN23Q9H3S7 1636 aa31■■■□□ 2.55
SHROOM1-204ENST00000440118 KIF3BO15066 747 aa30.98■■■□□ 2.55
SHROOM1-204ENST00000440118 NPATQ14207 1427 aa30.98■■■□□ 2.55
SHROOM1-204ENST00000440118 PPP6R1Q9UPN7 881 aa30.96■■■□□ 2.55
SHROOM1-204ENST00000440118 CROCC2H7BZ55 1655 aa30.95■■■□□ 2.55
SHROOM1-204ENST00000440118 KDM5DQ9BY66 1539 aa30.93■■■□□ 2.54
SHROOM1-204ENST00000440118 MYO3AQ8NEV4 1616 aa30.92■■■□□ 2.54
SHROOM1-204ENST00000440118 FAM135AQ9P2D6 1515 aa30.91■■■□□ 2.54
SHROOM1-204ENST00000440118 STRCQ7RTU9 1775 aa30.9■■■□□ 2.54
SHROOM1-204ENST00000440118 FGD6Q6ZV73 1430 aa30.9■■■□□ 2.54
SHROOM1-204ENST00000440118 EIF2AK4Q9P2K8 1649 aaKnown RBP30.87■■■□□ 2.53
SHROOM1-204ENST00000440118 PTPRKQ15262 1439 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms