RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
PTPRF-208ENST00000437607 MAGI2Q86UL8 1455 aa19.84■□□□□ 0.77
PTPRF-208ENST00000437607 POGZQ7Z3K3 1410 aa19.84■□□□□ 0.77
PTPRF-208ENST00000437607 FMN1Q68DA7 1419 aa19.83■□□□□ 0.76
PTPRF-208ENST00000437607 SCAPERQ9BY12 1400 aa19.82■□□□□ 0.76
PTPRF-208ENST00000437607 CDC42BPBQ9Y5S2 1711 aa19.82■□□□□ 0.76
PTPRF-208ENST00000437607 UBTFP17480 764 aaKnown RBP19.8■□□□□ 0.76
PTPRF-208ENST00000437607 ATP1B4Q9UN42 357 aaPredicted RBP19.76■□□□□ 0.75
PTPRF-208ENST00000437607 ARHGEF12Q9NZN5 1544 aa19.76■□□□□ 0.75
PTPRF-208ENST00000437607 KDM5CP41229 1560 aa19.75■□□□□ 0.75
PTPRF-208ENST00000437607 TROQ12816 1431 aaPredicted RBP19.75■□□□□ 0.75
PTPRF-208ENST00000437607 ATP10AO60312 1499 aa19.74■□□□□ 0.75
PTPRF-208ENST00000437607 FBXO41Q8TF61 875 aa19.74■□□□□ 0.75
PTPRF-208ENST00000437607 ARHGAP5Q13017 1502 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 PREX1Q8TCU6 1659 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 EFCAB2Q5VUJ9 269 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 C9orf84Q5VXU9 1444 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 PLPPR3Q6T4P5 718 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 PREX2Q70Z35 1606 aa19.72■□□□□ 0.75
PTPRF-208ENST00000437607 CDC42BPAQ5VT25 1732 aa19.71■□□□□ 0.75
PTPRF-208ENST00000437607 HSPA2P54652 639 aa19.71■□□□□ 0.75
PTPRF-208ENST00000437607 MLECQ14165 292 aa19.71■□□□□ 0.75
PTPRF-208ENST00000437607 DIP2CQ9Y2E4 1556 aa19.7■□□□□ 0.74
PTPRF-208ENST00000437607 CDK11AQ9UQ88 783 aaPredicted RBP19.7■□□□□ 0.74
PTPRF-208ENST00000437607 ZNF518AQ6AHZ1 1483 aa19.7■□□□□ 0.74
PTPRF-208ENST00000437607 ITSN2Q9NZM3 1697 aa19.7■□□□□ 0.74
PTPRF-208ENST00000437607 ABCA6Q8N139 1617 aa19.69■□□□□ 0.74
PTPRF-208ENST00000437607 SETD1BQ9UPS6 1966 aaKnown RBP19.67■□□□□ 0.74
PTPRF-208ENST00000437607 CLIP1P30622 1438 aa19.67■□□□□ 0.74
PTPRF-208ENST00000437607 REREQ9P2R6 1566 aa19.66■□□□□ 0.74
PTPRF-208ENST00000437607 STRCQ7RTU9 1775 aa19.65■□□□□ 0.74
PTPRF-208ENST00000437607 ABCC1P33527 1531 aa19.65■□□□□ 0.74
PTPRF-208ENST00000437607 AFAP1Q8N556 730 aa19.64■□□□□ 0.73
PTPRF-208ENST00000437607 C3P01024 1663 aa19.64■□□□□ 0.73
PTPRF-208ENST00000437607 KIDINS220Q9ULH0 1771 aa19.64■□□□□ 0.73
PTPRF-208ENST00000437607 CASKIN1Q8WXD9 1431 aa19.63■□□□□ 0.73
PTPRF-208ENST00000437607 CCDC18Q5T9S5 1454 aa19.62■□□□□ 0.73
PTPRF-208ENST00000437607 MLH3Q9UHC1 1453 aa19.6■□□□□ 0.73
PTPRF-208ENST00000437607 CEBPAP49715 358 aaPredicted RBP19.6■□□□□ 0.73
PTPRF-208ENST00000437607 TRAPPC8Q9Y2L5 1435 aa19.59■□□□□ 0.73
PTPRF-208ENST00000437607 AGLP35573 1532 aa19.56■□□□□ 0.72
PTPRF-208ENST00000437607 FYCO1Q9BQS8 1478 aa19.56■□□□□ 0.72
PTPRF-208ENST00000437607 SAMD9LQ8IVG5 1584 aa19.56■□□□□ 0.72
PTPRF-208ENST00000437607 MYT1LQ9UL68 1186 aa19.52■□□□□ 0.72
PTPRF-208ENST00000437607 SUPT6HQ7KZ85 1726 aaKnown RBP19.51■□□□□ 0.71
PTPRF-208ENST00000437607 MROH2AA6NES4 1674 aa19.5■□□□□ 0.71
PTPRF-208ENST00000437607 CERKQ8TCT0 537 aa19.5■□□□□ 0.71
PTPRF-208ENST00000437607 SYCP2Q9BX26 1530 aa19.5■□□□□ 0.71
PTPRF-208ENST00000437607 GPATCH8Q9UKJ3 1502 aaKnown RBP19.49■□□□□ 0.71
PTPRF-208ENST00000437607 UHRF1BP1Q6BDS2 1440 aa19.49■□□□□ 0.71
PTPRF-208ENST00000437607 INO80Q9ULG1 1556 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-208ENST00000437607 CLTCQ00610 1675 aaKnown RBP19.44■□□□□ 0.7
PTPRF-208ENST00000437607 ATP7AQ04656 1500 aa19.43■□□□□ 0.7
PTPRF-208ENST00000437607 PLXNC1O60486 1568 aa19.43■□□□□ 0.7
PTPRF-208ENST00000437607 LOC105371045A0A1W2PR82 267 aa19.41■□□□□ 0.7
PTPRF-208ENST00000437607 ZNF777Q9ULD5 760 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-208ENST00000437607 CNTLNQ9NXG0 1405 aa19.4■□□□□ 0.7
PTPRF-208ENST00000437607 ADGBQ8N7X0 1667 aa19.4■□□□□ 0.7
PTPRF-208ENST00000437607 HNRNPMP52272 730 aaKnown RBP eCLIP19.39■□□□□ 0.693e-10■■■■□ 26
PTPRF-208ENST00000437607 PTPRTO14522 1441 aa19.38■□□□□ 0.69
PTPRF-208ENST00000437607 TIAM1Q13009 1591 aa19.38■□□□□ 0.69
PTPRF-208ENST00000437607 KIAA1107Q9UPP5 1409 aa19.37■□□□□ 0.69
PTPRF-208ENST00000437607 SPAG9O60271 1321 aaKnown RBP19.37■□□□□ 0.69
PTPRF-208ENST00000437607 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
PTPRF-208ENST00000437607 ZNF142P52746 1687 aaPredicted RBP19.36■□□□□ 0.69
PTPRF-208ENST00000437607 LTBP4Q8N2S1 1624 aa19.36■□□□□ 0.69
PTPRF-208ENST00000437607 ESF1Q9H501 851 aaKnown RBP19.36■□□□□ 0.69
PTPRF-208ENST00000437607 MYO3AQ8NEV4 1616 aa19.36■□□□□ 0.69
PTPRF-208ENST00000437607 PLEKHH2Q8IVE3 1493 aa19.35■□□□□ 0.69
PTPRF-208ENST00000437607 CAMSAP1Q5T5Y3 1602 aa19.35■□□□□ 0.69
PTPRF-208ENST00000437607 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
PTPRF-208ENST00000437607 CCNB3Q8WWL7 1395 aa19.34■□□□□ 0.69
PTPRF-208ENST00000437607 A2MP01023 1474 aa19.34■□□□□ 0.69
PTPRF-208ENST00000437607 NPATQ14207 1427 aa19.34■□□□□ 0.69
PTPRF-208ENST00000437607 CFDP1Q9UEE9 299 aaPredicted RBP19.33■□□□□ 0.68
PTPRF-208ENST00000437607 ZMYM3Q14202 1370 aa19.32■□□□□ 0.68
PTPRF-208ENST00000437607 EHBP1L1Q8N3D4 1523 aa19.32■□□□□ 0.68
PTPRF-208ENST00000437607 MTUS2Q5JR59 1369 aa19.32■□□□□ 0.68
PTPRF-208ENST00000437607 MBD5Q9P267 1494 aa19.29■□□□□ 0.68
PTPRF-208ENST00000437607 CEP162Q5TB80 1403 aa19.29■□□□□ 0.68
PTPRF-208ENST00000437607 ZNF644Q9H582 1327 aaPredicted RBP19.28■□□□□ 0.68
PTPRF-208ENST00000437607 CEP170BQ9Y4F5 1589 aaPredicted RBP19.27■□□□□ 0.68
PTPRF-208ENST00000437607 PTPRKQ15262 1439 aa19.27■□□□□ 0.68
PTPRF-208ENST00000437607 IQSEC2Q5JU85 1478 aa19.23■□□□□ 0.67
PTPRF-208ENST00000437607 GGT6Q6P531 493 aa19.22■□□□□ 0.67
PTPRF-208ENST00000437607 RTEL1-TNFRSF6BF6WH68 1400 aa19.22■□□□□ 0.67
PTPRF-208ENST00000437607 POLR1AO95602 1720 aaPredicted RBP19.22■□□□□ 0.67
PTPRF-208ENST00000437607 NCKAP5LQ9HCH0 1330 aa19.22■□□□□ 0.67
PTPRF-208ENST00000437607 PLA2R1Q13018 1463 aa19.22■□□□□ 0.67
PTPRF-208ENST00000437607 DNMT1P26358 1616 aaKnown RBP19.22■□□□□ 0.67
PTPRF-208ENST00000437607 TCOF1Q13428 1488 aaKnown RBP19.21■□□□□ 0.67
PTPRF-208ENST00000437607 CAMSAP2Q08AD1 1489 aa19.19■□□□□ 0.66
PTPRF-208ENST00000437607 NCOA2Q15596 1464 aa19.19■□□□□ 0.66
PTPRF-208ENST00000437607 DHX29Q7Z478 1369 aaKnown RBP19.18■□□□□ 0.66
PTPRF-208ENST00000437607 CCDC141Q6ZP82 1450 aa19.17■□□□□ 0.66
PTPRF-208ENST00000437607 PPP6R1Q9UPN7 881 aa19.16■□□□□ 0.66
PTPRF-208ENST00000437607 A2ML1A8K2U0 1454 aa19.16■□□□□ 0.66
PTPRF-208ENST00000437607 ARHGEF5Q12774 1597 aa19.15■□□□□ 0.66
PTPRF-208ENST00000437607 ZNF335Q9H4Z2 1342 aaPredicted RBP19.15■□□□□ 0.66
PTPRF-208ENST00000437607 SPATA31D1Q6ZQQ2 1576 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms