RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 ARAP3Q8WWN8 1544 aa34.97■■■■□ 3.19
CPSF4-204ENST00000436336 PLCH2O75038 1416 aa34.96■■■■□ 3.19
CPSF4-204ENST00000436336 GLI2P10070 1586 aa34.96■■■■□ 3.19
CPSF4-204ENST00000436336 ARHGAP5Q13017 1502 aa34.95■■■■□ 3.18
CPSF4-204ENST00000436336 DIP2BQ9P265 1576 aa34.94■■■■□ 3.18
CPSF4-204ENST00000436336 CAMSAP2Q08AD1 1489 aa34.92■■■■□ 3.18
CPSF4-204ENST00000436336 MAP3K4Q9Y6R4 1608 aa34.88■■■■□ 3.17
CPSF4-204ENST00000436336 SAMD9LQ8IVG5 1584 aa34.88■■■■□ 3.17
CPSF4-204ENST00000436336 ZNF777Q9ULD5 760 aaPredicted RBP34.86■■■■□ 3.17
CPSF4-204ENST00000436336 CD109Q6YHK3 1445 aa34.85■■■■□ 3.17
CPSF4-204ENST00000436336 ZNF644Q9H582 1327 aaPredicted RBP34.84■■■■□ 3.17
CPSF4-204ENST00000436336 KIF13AQ9H1H9 1805 aa34.84■■■■□ 3.17
CPSF4-204ENST00000436336 DNMT1P26358 1616 aaKnown RBP34.83■■■■□ 3.17
CPSF4-204ENST00000436336 EFCAB2Q5VUJ9 269 aa34.81■■■■□ 3.16
CPSF4-204ENST00000436336 CFAP74Q9C0B2 1584 aa34.79■■■■□ 3.16
CPSF4-204ENST00000436336 PLEKHH2Q8IVE3 1493 aa34.78■■■■□ 3.16
CPSF4-204ENST00000436336 ITGAEP38570 1179 aa34.78■■■■□ 3.16
CPSF4-204ENST00000436336 FANCAO15360 1455 aa34.78■■■■□ 3.16
CPSF4-204ENST00000436336 FAM69CQ0P6D2 419 aa34.77■■■■□ 3.16
CPSF4-204ENST00000436336 ARHGEF5Q12774 1597 aa34.75■■■■□ 3.15
CPSF4-204ENST00000436336 CROCC2H7BZ55 1655 aa34.75■■■■□ 3.15
CPSF4-204ENST00000436336 ABCC1P33527 1531 aa34.74■■■■□ 3.15
CPSF4-204ENST00000436336 DAPK1P53355 1430 aa34.73■■■■□ 3.15
CPSF4-204ENST00000436336 KIAA1107Q9UPP5 1409 aa34.73■■■■□ 3.15
CPSF4-204ENST00000436336 SYCP2Q9BX26 1530 aa34.72■■■■□ 3.15
CPSF4-204ENST00000436336 ABCC5O15440 1437 aa34.69■■■■□ 3.14
CPSF4-204ENST00000436336 MBD5Q9P267 1494 aa34.69■■■■□ 3.14
CPSF4-204ENST00000436336 PTPRKQ15262 1439 aa34.69■■■■□ 3.14
CPSF4-204ENST00000436336 TSPOAP1O95153 1857 aa34.68■■■■□ 3.14
CPSF4-204ENST00000436336 PPRC1Q5VV67 1664 aaKnown RBP34.66■■■■□ 3.14
CPSF4-204ENST00000436336 NEO1Q92859 1461 aa34.65■■■■□ 3.14
CPSF4-204ENST00000436336 HNRNPMP52272 730 aaKnown RBP eCLIP34.64■■■■□ 3.14
CPSF4-204ENST00000436336 RSPH4AQ5TD94 716 aa34.64■■■■□ 3.14
CPSF4-204ENST00000436336 CCDC141Q6ZP82 1450 aa34.64■■■■□ 3.14
CPSF4-204ENST00000436336 AKNAQ7Z591 1439 aa34.64■■■■□ 3.14
CPSF4-204ENST00000436336 ARHGEF12Q9NZN5 1544 aa34.64■■■■□ 3.14
CPSF4-204ENST00000436336 ADGBQ8N7X0 1667 aa34.63■■■■□ 3.13
CPSF4-204ENST00000436336 ADGRL1O94910 1474 aa34.62■■■■□ 3.13
CPSF4-204ENST00000436336 SHANK2Q9UPX8 1470 aa34.61■■■■□ 3.13
CPSF4-204ENST00000436336 TEX14Q8IWB6 1497 aa34.58■■■■□ 3.13
CPSF4-204ENST00000436336 MAST1Q9Y2H9 1570 aa34.55■■■■□ 3.12
CPSF4-204ENST00000436336 SCAPERQ9BY12 1400 aa34.54■■■■□ 3.12
CPSF4-204ENST00000436336 ROCK1Q13464 1354 aa34.53■■■■□ 3.12
CPSF4-204ENST00000436336 TSPY4P0CV99 314 aa34.52■■■■□ 3.12
CPSF4-204ENST00000436336 TSPY10P0CW01 314 aa34.52■■■■□ 3.12
CPSF4-204ENST00000436336 CHIC2Q9UKJ5 165 aa34.52■■■■□ 3.12
CPSF4-204ENST00000436336 GCC2Q8IWJ2 1684 aa34.52■■■■□ 3.12
CPSF4-204ENST00000436336 ADGRL2O95490 1459 aa34.52■■■■□ 3.12
CPSF4-204ENST00000436336 C9orf84Q5VXU9 1444 aa34.51■■■■□ 3.12
CPSF4-204ENST00000436336 TRAPPC8Q9Y2L5 1435 aa34.51■■■■□ 3.12
CPSF4-204ENST00000436336 HFM1A2PYH4 1435 aa34.49■■■■□ 3.11
CPSF4-204ENST00000436336 SETD5Q9C0A6 1442 aa34.46■■■■□ 3.11
CPSF4-204ENST00000436336 NAIPQ13075 1403 aa34.44■■■■□ 3.1
CPSF4-204ENST00000436336 ZNF518AQ6AHZ1 1483 aa34.44■■■■□ 3.1
CPSF4-204ENST00000436336 NCOA1Q15788 1441 aa34.44■■■■□ 3.1
CPSF4-204ENST00000436336 ANKRD30AQ9BXX3 1397 aa34.43■■■■□ 3.1
CPSF4-204ENST00000436336 POGZQ7Z3K3 1410 aa34.42■■■■□ 3.1
CPSF4-204ENST00000436336 RICTORQ6R327 1708 aa34.41■■■■□ 3.1
CPSF4-204ENST00000436336 RRP7BPQ9NSQ0 103 aa34.41■■■■□ 3.1
CPSF4-204ENST00000436336 DENND4BO75064 1496 aaPredicted RBP34.41■■■■□ 3.1
CPSF4-204ENST00000436336 PLXNC1O60486 1568 aa34.4■■■■□ 3.1
CPSF4-204ENST00000436336 KDM5CP41229 1560 aa34.39■■■■□ 3.1
CPSF4-204ENST00000436336 TRHP20396 242 aaPredicted RBP34.39■■■■□ 3.1
CPSF4-204ENST00000436336 AFAP1Q8N556 730 aa34.39■■■■□ 3.1
CPSF4-204ENST00000436336 INO80Q9ULG1 1556 aaPredicted RBP34.39■■■■□ 3.1
CPSF4-204ENST00000436336 RTEL1-TNFRSF6BF6WH68 1400 aa34.38■■■■□ 3.09
CPSF4-204ENST00000436336 RAB3GAP2Q9H2M9 1393 aa34.37■■■■□ 3.09
CPSF4-204ENST00000436336 ZFYVE16Q7Z3T8 1539 aa34.37■■■■□ 3.09
CPSF4-204ENST00000436336 SPAG9O60271 1321 aaKnown RBP34.35■■■■□ 3.09
CPSF4-204ENST00000436336 ATP7AQ04656 1500 aa34.34■■■■□ 3.09
CPSF4-204ENST00000436336 KIDINS220Q9ULH0 1771 aa34.31■■■■□ 3.08
CPSF4-204ENST00000436336 HRCP23327 699 aa34.31■■■■□ 3.08
CPSF4-204ENST00000436336 HECW2Q9P2P5 1572 aa34.3■■■■□ 3.08
CPSF4-204ENST00000436336 FRMPD1Q5SYB0 1578 aa34.3■■■■□ 3.08
CPSF4-204ENST00000436336 KIF15Q9NS87 1388 aa34.29■■■■□ 3.08
CPSF4-204ENST00000436336 MLH3Q9UHC1 1453 aa34.28■■■■□ 3.08
CPSF4-204ENST00000436336 KDM6BO15054 1643 aa34.27■■■■□ 3.08
CPSF4-204ENST00000436336 RAPGEF3O95398 923 aa34.25■■■■□ 3.07
CPSF4-204ENST00000436336 ZMYM4Q5VZL5 1548 aa34.24■■■■□ 3.07
CPSF4-204ENST00000436336 DUOX2Q9NRD8 1548 aa34.24■■■■□ 3.07
CPSF4-204ENST00000436336 ANKRD50Q9ULJ7 1429 aa34.22■■■■□ 3.07
CPSF4-204ENST00000436336 MYT1LQ9UL68 1186 aa34.19■■■■□ 3.06
CPSF4-204ENST00000436336 COL17A1Q9UMD9 1497 aaPredicted RBP34.17■■■■□ 3.06
CPSF4-204ENST00000436336 ACIN1Q9UKV3 1341 aaKnown RBP34.17■■■■□ 3.06
CPSF4-204ENST00000436336 ABCA6Q8N139 1617 aa34.15■■■■□ 3.06
CPSF4-204ENST00000436336 ERBINQ96RT1 1412 aa34.14■■■■□ 3.06
CPSF4-204ENST00000436336 MAGI2Q86UL8 1455 aa34.13■■■■□ 3.05
CPSF4-204ENST00000436336 DIP2CQ9Y2E4 1556 aa34.1■■■■□ 3.05
CPSF4-204ENST00000436336 EIF2AK4Q9P2K8 1649 aaKnown RBP34.08■■■■□ 3.05
CPSF4-204ENST00000436336 DHX57Q6P158 1386 aaKnown RBP34.06■■■■□ 3.04
CPSF4-204ENST00000436336 DHX29Q7Z478 1369 aaKnown RBP34.06■■■■□ 3.04
CPSF4-204ENST00000436336 A2MP01023 1474 aa34.05■■■■□ 3.04
CPSF4-204ENST00000436336 CCER1Q8TC90 406 aaPredicted RBP34.04■■■■□ 3.04
CPSF4-204ENST00000436336 UNC13BO14795 1591 aa34.03■■■■□ 3.04
CPSF4-204ENST00000436336 YEATS2Q9ULM3 1422 aa34.03■■■■□ 3.04
CPSF4-204ENST00000436336 TRIM52Q96A61 297 aa34■■■■□ 3.03
CPSF4-204ENST00000436336 BCORL1Q5H9F3 1711 aa33.99■■■■□ 3.03
CPSF4-204ENST00000436336 ARHGEF40Q8TER5 1519 aa33.98■■■■□ 3.03
CPSF4-204ENST00000436336 KDM5DQ9BY66 1539 aa33.98■■■■□ 3.03
CPSF4-204ENST00000436336 DEPDC5O75140 1603 aa33.97■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms