RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 NCKAP5LQ9HCH0 1330 aa14.29□□□□□ -0.12
CCDC88A-206ENST00000430086 C3orf67Q6ZVT6 689 aa14.28□□□□□ -0.12
CCDC88A-206ENST00000430086 GPHNQ9NQX3 736 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-206ENST00000430086 KIF3CO14782 793 aa14.23□□□□□ -0.13
CCDC88A-206ENST00000430086 MFSD10Q14728 455 aa14.23□□□□□ -0.13
CCDC88A-206ENST00000430086 MAMSTRQ6ZN01 415 aa14.23□□□□□ -0.13
CCDC88A-206ENST00000430086 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.23□□□□□ -0.13
CCDC88A-206ENST00000430086 TMEM92Q6UXU6 159 aa14.22□□□□□ -0.13
CCDC88A-206ENST00000430086 TMC2Q8TDI7 906 aa14.22□□□□□ -0.13
CCDC88A-206ENST00000430086 LARP6Q9BRS8 491 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-206ENST00000430086 WDR70Q9NW82 654 aa14.2□□□□□ -0.14
CCDC88A-206ENST00000430086 C2orf72A6NCS6 295 aa14.19□□□□□ -0.14
CCDC88A-206ENST00000430086 SCUBE2Q9NQ36 999 aa14.19□□□□□ -0.14
CCDC88A-206ENST00000430086 DDX27Q96GQ7 796 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-206ENST00000430086 FOXK1P85037 733 aa14.16□□□□□ -0.14
CCDC88A-206ENST00000430086 LHX8Q68G74 356 aa14.16□□□□□ -0.14
CCDC88A-206ENST00000430086 DSG2Q14126 1118 aa14.13□□□□□ -0.15
CCDC88A-206ENST00000430086 PPP1R15BQ5SWA1 713 aa14.13□□□□□ -0.15
CCDC88A-206ENST00000430086 E2F4Q16254 413 aa14.08□□□□□ -0.16
CCDC88A-206ENST00000430086 PLPP6Q8IY26 295 aa14.08□□□□□ -0.16
CCDC88A-206ENST00000430086 SLAIN1Q8ND83 568 aa14.08□□□□□ -0.16
CCDC88A-206ENST00000430086 OTUD5Q96G74 571 aa14.08□□□□□ -0.16
CCDC88A-206ENST00000430086 CAMK2BQ13554 666 aa14.07□□□□□ -0.16
CCDC88A-206ENST00000430086 P3H3Q8IVL6 736 aa14.05□□□□□ -0.16
CCDC88A-206ENST00000430086 KCNV2Q8TDN2 545 aa14.01□□□□□ -0.17
CCDC88A-206ENST00000430086 ARIH1Q9Y4X5 557 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-206ENST00000430086 SLC34A2O95436 690 aa13.97□□□□□ -0.17
CCDC88A-206ENST00000430086 ARHGEF1Q92888 912 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-206ENST00000430086 EMILIN3Q9NT22 766 aa13.96□□□□□ -0.17
CCDC88A-206ENST00000430086 OXER1Q8TDS5 423 aa13.92□□□□□ -0.18
CCDC88A-206ENST00000430086 HOXB3P14651 431 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-206ENST00000430086 PTCD2Q8WV60 388 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-206ENST00000430086 SNPHO15079 494 aa13.9□□□□□ -0.18
CCDC88A-206ENST00000430086 DOK7Q18PE1 504 aa13.9□□□□□ -0.18
CCDC88A-206ENST00000430086 DPYSL4O14531 572 aa13.86□□□□□ -0.19
CCDC88A-206ENST00000430086 UPF1Q92900 1129 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC88A-206ENST00000430086 TBC1D12O60347 775 aa13.85□□□□□ -0.19
CCDC88A-206ENST00000430086 ZSWIM6Q9HCJ5 1215 aa13.85□□□□□ -0.19
CCDC88A-206ENST00000430086 RIMBP2O15034 1052 aa13.84□□□□□ -0.19
CCDC88A-206ENST00000430086 MAP3K9P80192 1104 aa13.84□□□□□ -0.19
CCDC88A-206ENST00000430086 BCANQ96GW7 911 aa13.83□□□□□ -0.2
CCDC88A-206ENST00000430086 PCDHGA4Q9Y5G9 962 aa13.83□□□□□ -0.2
CCDC88A-206ENST00000430086 SPDYE16A6NNV3 312 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-206ENST00000430086 NBR1Q14596 966 aa13.81□□□□□ -0.2
CCDC88A-206ENST00000430086 PDIA6Q15084 440 aa13.81□□□□□ -0.2
CCDC88A-206ENST00000430086 ZNF710Q8N1W2 664 aa13.79□□□□□ -0.2
CCDC88A-206ENST00000430086 GPR153Q6NV75 609 aa13.78□□□□□ -0.2
CCDC88A-206ENST00000430086 KDM4FA0A1W2PPD8 638 aa13.75□□□□□ -0.21
CCDC88A-206ENST00000430086 EVI5O60447 810 aa13.75□□□□□ -0.21
CCDC88A-206ENST00000430086 ARSIQ5FYB1 569 aa13.74□□□□□ -0.21
CCDC88A-206ENST00000430086 ANO8Q9HCE9 1232 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-206ENST00000430086 ZNF316A6NFI3 1004 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-206ENST00000430086 SEMA3EO15041 775 aa13.72□□□□□ -0.21
CCDC88A-206ENST00000430086 HOXB1P14653 301 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-206ENST00000430086 TESPA1A2RU30 521 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-206ENST00000430086 PTGER2P43116 358 aa13.7□□□□□ -0.22
CCDC88A-206ENST00000430086 KHSRPQ92945 711 aaKnown RBP eCLIP13.69□□□□□ -0.229e-7■■□□□ 13.9
CCDC88A-206ENST00000430086 NUDT7P0C024 238 aa13.67□□□□□ -0.22
CCDC88A-206ENST00000430086 ST18O60284 1047 aa13.66□□□□□ -0.22
CCDC88A-206ENST00000430086 MLLT3P42568 568 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-206ENST00000430086 SMYD5Q6GMV2 418 aa13.62□□□□□ -0.23
CCDC88A-206ENST00000430086 FAM163AQ96GL9 167 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-206ENST00000430086 TULP1O00294 542 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-206ENST00000430086 DDX12PQ92771 950 aa13.59□□□□□ -0.23
CCDC88A-206ENST00000430086 PHF14O94880 888 aa13.58□□□□□ -0.24
CCDC88A-206ENST00000430086 JPH4Q96JJ6 628 aa13.58□□□□□ -0.24
CCDC88A-206ENST00000430086 LHX6Q9UPM6 363 aa13.58□□□□□ -0.24
CCDC88A-206ENST00000430086 GRXCR2A6NFK2 248 aa13.57□□□□□ -0.24
CCDC88A-206ENST00000430086 FOSBP53539 338 aa13.57□□□□□ -0.24
CCDC88A-206ENST00000430086 LCE2DQ5TA82 110 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-206ENST00000430086 PSDA5PKW4 1024 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-206ENST00000430086 EPAS1Q99814 870 aa13.56□□□□□ -0.24
CCDC88A-206ENST00000430086 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC88A-206ENST00000430086 PCDHGA10Q9Y5H3 936 aa13.55□□□□□ -0.24
CCDC88A-206ENST00000430086 OSBPP22059 807 aa13.54□□□□□ -0.24
CCDC88A-206ENST00000430086 EMP3P54852 163 aa13.52□□□□□ -0.25
CCDC88A-206ENST00000430086 TYW1BQ6NUM6 668 aa13.51□□□□□ -0.25
CCDC88A-206ENST00000430086 ZNF454Q8N9F8 522 aa13.51□□□□□ -0.25
CCDC88A-206ENST00000430086 FBXW7Q969H0 707 aa13.51□□□□□ -0.25
CCDC88A-206ENST00000430086 MARVELD3Q96A59 401 aa13.51□□□□□ -0.25
CCDC88A-206ENST00000430086 LMOD2Q6P5Q4 547 aa13.49□□□□□ -0.25
CCDC88A-206ENST00000430086 ERBB3P21860 1342 aa13.48□□□□□ -0.25
CCDC88A-206ENST00000430086 PPP4R3BQ5MIZ7 849 aa13.48□□□□□ -0.25
CCDC88A-206ENST00000430086 ZDHHC16Q969W1 377 aa13.48□□□□□ -0.25
CCDC88A-206ENST00000430086 PRIM1P49642 420 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-206ENST00000430086 EN1Q05925 392 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-206ENST00000430086 RBM26Q5T8P6 1007 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-206ENST00000430086 VARS2Q5ST30 1063 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-206ENST00000430086 FAM205CA6NFA0 338 aa13.43□□□□□ -0.26
CCDC88A-206ENST00000430086 ADAM33Q9BZ11 813 aa13.42□□□□□ -0.26
CCDC88A-206ENST00000430086 BCL2L12Q9HB09 334 aa13.42□□□□□ -0.26
CCDC88A-206ENST00000430086 MAP3K7O43318 606 aa13.41□□□□□ -0.26
CCDC88A-206ENST00000430086 RBM33Q96EV2 1170 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-206ENST00000430086 HS3ST6Q96QI5 342 aa13.4□□□□□ -0.26
CCDC88A-206ENST00000430086 POTEB3A0JP26 581 aa13.38□□□□□ -0.27
CCDC88A-206ENST00000430086 C6orf132Q5T0Z8 1188 aa13.38□□□□□ -0.27
CCDC88A-206ENST00000430086 POTEBQ6S5H4 581 aa13.38□□□□□ -0.27
CCDC88A-206ENST00000430086 GPIHBP1Q8IV16 184 aa13.38□□□□□ -0.27
CCDC88A-206ENST00000430086 ZNF687Q8N1G0 1237 aa13.37□□□□□ -0.27
CCDC88A-206ENST00000430086 NUTM2FA1L443 756 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 148.7 ms