RNA–Protein interactions for RNA: ENST00000430029.1

PTCD1-203, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-203ENST00000430029 TSPOAP1O95153 1857 aa29.92■■■□□ 2.38
PTCD1-203ENST00000430029 ARHGAP5Q13017 1502 aa29.91■■■□□ 2.38
PTCD1-203ENST00000430029 CFDP1Q9UEE9 299 aaPredicted RBP29.9■■■□□ 2.38
PTCD1-203ENST00000430029 FGD6Q6ZV73 1430 aa29.88■■■□□ 2.37
PTCD1-203ENST00000430029 MIA2Q96PC5 1412 aa29.88■■■□□ 2.37
PTCD1-203ENST00000430029 FANCAO15360 1455 aa29.86■■■□□ 2.37
PTCD1-203ENST00000430029 EFCAB2Q5VUJ9 269 aa29.85■■■□□ 2.37
PTCD1-203ENST00000430029 ZNF644Q9H582 1327 aaPredicted RBP29.83■■■□□ 2.37
PTCD1-203ENST00000430029 ZNF777Q9ULD5 760 aaPredicted RBP29.83■■■□□ 2.37
PTCD1-203ENST00000430029 SAMD9LQ8IVG5 1584 aa29.82■■■□□ 2.36
PTCD1-203ENST00000430029 RRBP1Q9P2E9 1410 aaKnown RBP29.81■■■□□ 2.36
PTCD1-203ENST00000430029 PTPN23Q9H3S7 1636 aa29.81■■■□□ 2.36
PTCD1-203ENST00000430029 TEX14Q8IWB6 1497 aa29.8■■■□□ 2.36
PTCD1-203ENST00000430029 CAMSAP2Q08AD1 1489 aa29.79■■■□□ 2.36
PTCD1-203ENST00000430029 TCOF1Q13428 1488 aaKnown RBP29.79■■■□□ 2.36
PTCD1-203ENST00000430029 NEO1Q92859 1461 aa29.79■■■□□ 2.36
PTCD1-203ENST00000430029 AKNAQ7Z591 1439 aa29.78■■■□□ 2.36
PTCD1-203ENST00000430029 CFAP74Q9C0B2 1584 aa29.77■■■□□ 2.36
PTCD1-203ENST00000430029 ABCC1P33527 1531 aa29.73■■■□□ 2.35
PTCD1-203ENST00000430029 ARHGEF12Q9NZN5 1544 aa29.73■■■□□ 2.35
PTCD1-203ENST00000430029 ADGRL1O94910 1474 aa29.72■■■□□ 2.35
PTCD1-203ENST00000430029 FAM50AQ14320 339 aaKnown RBP29.71■■■□□ 2.35
PTCD1-203ENST00000430029 SYCP2Q9BX26 1530 aa29.7■■■□□ 2.34
PTCD1-203ENST00000430029 KIAA1107Q9UPP5 1409 aa29.7■■■□□ 2.34
PTCD1-203ENST00000430029 PLEKHH2Q8IVE3 1493 aa29.69■■■□□ 2.34
PTCD1-203ENST00000430029 HNRNPMP52272 730 aaKnown RBP eCLIP29.69■■■□□ 2.34
PTCD1-203ENST00000430029 SCAPERQ9BY12 1400 aa29.69■■■□□ 2.34
PTCD1-203ENST00000430029 MBD5Q9P267 1494 aa29.68■■■□□ 2.34
PTCD1-203ENST00000430029 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.67■■■□□ 2.34
PTCD1-203ENST00000430029 TRAPPC8Q9Y2L5 1435 aa29.63■■■□□ 2.33
PTCD1-203ENST00000430029 COL17A1Q9UMD9 1497 aaPredicted RBP29.63■■■□□ 2.33
PTCD1-203ENST00000430029 ARHGEF5Q12774 1597 aa29.61■■■□□ 2.33
PTCD1-203ENST00000430029 DENND4BO75064 1496 aaPredicted RBP29.6■■■□□ 2.33
PTCD1-203ENST00000430029 ABCC5O15440 1437 aa29.59■■■□□ 2.33
PTCD1-203ENST00000430029 DNMT1P26358 1616 aaKnown RBP29.59■■■□□ 2.33
PTCD1-203ENST00000430029 POGZQ7Z3K3 1410 aa29.58■■■□□ 2.33
PTCD1-203ENST00000430029 DAPK1P53355 1430 aa29.57■■■□□ 2.32
PTCD1-203ENST00000430029 RAPGEF3O95398 923 aa29.57■■■□□ 2.32
PTCD1-203ENST00000430029 AFAP1Q8N556 730 aa29.57■■■□□ 2.32
PTCD1-203ENST00000430029 CCDC141Q6ZP82 1450 aa29.56■■■□□ 2.32
PTCD1-203ENST00000430029 RICTORQ6R327 1708 aa29.56■■■□□ 2.32
PTCD1-203ENST00000430029 RSPH4AQ5TD94 716 aa29.55■■■□□ 2.32
PTCD1-203ENST00000430029 FRMPD1Q5SYB0 1578 aa29.55■■■□□ 2.32
PTCD1-203ENST00000430029 PTPRKQ15262 1439 aa29.54■■■□□ 2.32
PTCD1-203ENST00000430029 ITGAEP38570 1179 aa29.53■■■□□ 2.32
PTCD1-203ENST00000430029 TRIM26Q12899 539 aaPredicted RBP29.53■■■□□ 2.32
PTCD1-203ENST00000430029 ZNF518AQ6AHZ1 1483 aa29.53■■■□□ 2.32
PTCD1-203ENST00000430029 CROCC2H7BZ55 1655 aa29.5■■■□□ 2.31
PTCD1-203ENST00000430029 KDM5CP41229 1560 aa29.5■■■□□ 2.31
PTCD1-203ENST00000430029 KDM6BO15054 1643 aa29.49■■■□□ 2.31
PTCD1-203ENST00000430029 SHANK2Q9UPX8 1470 aa29.46■■■□□ 2.31
PTCD1-203ENST00000430029 C9orf84Q5VXU9 1444 aa29.45■■■□□ 2.31
PTCD1-203ENST00000430029 TSPY4P0CV99 314 aa29.45■■■□□ 2.31
PTCD1-203ENST00000430029 TSPY10P0CW01 314 aa29.45■■■□□ 2.31
PTCD1-203ENST00000430029 SPAG9O60271 1321 aaKnown RBP29.45■■■□□ 2.3
PTCD1-203ENST00000430029 MAST1Q9Y2H9 1570 aa29.44■■■□□ 2.3
PTCD1-203ENST00000430029 AEBP2Q6ZN18 517 aaPredicted RBP29.44■■■□□ 2.3
PTCD1-203ENST00000430029 CHIC2Q9UKJ5 165 aa29.44■■■□□ 2.3
PTCD1-203ENST00000430029 ZMYM4Q5VZL5 1548 aa29.43■■■□□ 2.3
PTCD1-203ENST00000430029 INO80Q9ULG1 1556 aaPredicted RBP29.41■■■□□ 2.3
PTCD1-203ENST00000430029 MLH3Q9UHC1 1453 aa29.41■■■□□ 2.3
PTCD1-203ENST00000430029 ZFYVE16Q7Z3T8 1539 aa29.4■■■□□ 2.3
PTCD1-203ENST00000430029 RTEL1-TNFRSF6BF6WH68 1400 aa29.4■■■□□ 2.3
PTCD1-203ENST00000430029 HECW2Q9P2P5 1572 aa29.39■■■□□ 2.3
PTCD1-203ENST00000430029 KIDINS220Q9ULH0 1771 aa29.39■■■□□ 2.3
PTCD1-203ENST00000430029 ATP7AQ04656 1500 aa29.39■■■□□ 2.3
PTCD1-203ENST00000430029 ADGRL2O95490 1459 aa29.37■■■□□ 2.29
PTCD1-203ENST00000430029 ADGBQ8N7X0 1667 aa29.35■■■□□ 2.29
PTCD1-203ENST00000430029 YEATS2Q9ULM3 1422 aa29.35■■■□□ 2.29
PTCD1-203ENST00000430029 MYT1LQ9UL68 1186 aa29.34■■■□□ 2.29
PTCD1-203ENST00000430029 NCOA1Q15788 1441 aa29.34■■■□□ 2.29
PTCD1-203ENST00000430029 MAGI2Q86UL8 1455 aa29.34■■■□□ 2.29
PTCD1-203ENST00000430029 ROCK1Q13464 1354 aa29.33■■■□□ 2.29
PTCD1-203ENST00000430029 ANKRD30AQ9BXX3 1397 aa29.32■■■□□ 2.28
PTCD1-203ENST00000430029 PLXNC1O60486 1568 aa29.31■■■□□ 2.28
PTCD1-203ENST00000430029 RRP7BPQ9NSQ0 103 aa29.31■■■□□ 2.28
PTCD1-203ENST00000430029 ABCA6Q8N139 1617 aa29.31■■■□□ 2.28
PTCD1-203ENST00000430029 DIP2CQ9Y2E4 1556 aa29.29■■■□□ 2.28
PTCD1-203ENST00000430029 PCGF6Q9BYE7 350 aa29.28■■■□□ 2.28
PTCD1-203ENST00000430029 KIF15Q9NS87 1388 aa29.26■■■□□ 2.28
PTCD1-203ENST00000430029 ARHGEF40Q8TER5 1519 aa29.25■■■□□ 2.27
PTCD1-203ENST00000430029 HFM1A2PYH4 1435 aa29.23■■■□□ 2.27
PTCD1-203ENST00000430029 NAIPQ13075 1403 aa29.23■■■□□ 2.27
PTCD1-203ENST00000430029 ATP10AO60312 1499 aa29.21■■■□□ 2.27
PTCD1-203ENST00000430029 DUOX2Q9NRD8 1548 aa29.2■■■□□ 2.26
PTCD1-203ENST00000430029 GCC2Q8IWJ2 1684 aa29.19■■■□□ 2.26
PTCD1-203ENST00000430029 A2MP01023 1474 aa29.19■■■□□ 2.26
PTCD1-203ENST00000430029 DHX29Q7Z478 1369 aaKnown RBP29.18■■■□□ 2.26
PTCD1-203ENST00000430029 ANKRD50Q9ULJ7 1429 aa29.15■■■□□ 2.26
PTCD1-203ENST00000430029 REREQ9P2R6 1566 aa29.14■■■□□ 2.26
PTCD1-203ENST00000430029 SETD5Q9C0A6 1442 aa29.13■■■□□ 2.25
PTCD1-203ENST00000430029 SIGLEC1Q9BZZ2 1709 aa29.13■■■□□ 2.25
PTCD1-203ENST00000430029 ERBINQ96RT1 1412 aa29.11■■■□□ 2.25
PTCD1-203ENST00000430029 RAB3GAP2Q9H2M9 1393 aa29.07■■■□□ 2.24
PTCD1-203ENST00000430029 AGLP35573 1532 aa29.05■■■□□ 2.24
PTCD1-203ENST00000430029 EIF2AK4Q9P2K8 1649 aaKnown RBP29.05■■■□□ 2.24
PTCD1-203ENST00000430029 KIF3BO15066 747 aa29.03■■■□□ 2.24
PTCD1-203ENST00000430029 BCORL1Q5H9F3 1711 aa29.03■■■□□ 2.24
PTCD1-203ENST00000430029 RNF17Q9BXT8 1623 aaKnown RBP28.97■■■□□ 2.23
PTCD1-203ENST00000430029 DEPDC5O75140 1603 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms