RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CLIP1P30622 1438 aa27.94■■■□□ 2.06
TRIM39-209ENST00000428728 RIMS1Q86UR5 1692 aaKnown RBP27.94■■■□□ 2.06
TRIM39-209ENST00000428728 PTPRMP28827 1452 aa27.93■■■□□ 2.06
TRIM39-209ENST00000428728 POGZQ7Z3K3 1410 aa27.92■■■□□ 2.06
TRIM39-209ENST00000428728 SCAPERQ9BY12 1400 aa27.92■■■□□ 2.06
TRIM39-209ENST00000428728 ARHGAP5Q13017 1502 aa27.91■■■□□ 2.06
TRIM39-209ENST00000428728 CASKIN1Q8WXD9 1431 aa27.91■■■□□ 2.06
TRIM39-209ENST00000428728 YEATS2Q9ULM3 1422 aa27.91■■■□□ 2.06
TRIM39-209ENST00000428728 CCDC18Q5T9S5 1454 aa27.9■■■□□ 2.06
TRIM39-209ENST00000428728 CDC42BPBQ9Y5S2 1711 aa27.9■■■□□ 2.06
TRIM39-209ENST00000428728 PREX2Q70Z35 1606 aa27.87■■■□□ 2.05
TRIM39-209ENST00000428728 MAGI2Q86UL8 1455 aa27.87■■■□□ 2.05
TRIM39-209ENST00000428728 FYCO1Q9BQS8 1478 aa27.85■■■□□ 2.05
TRIM39-209ENST00000428728 EFCAB2Q5VUJ9 269 aa27.84■■■□□ 2.05
TRIM39-209ENST00000428728 FER1L4A9Z1Z3 1794 aa27.83■■■□□ 2.05
TRIM39-209ENST00000428728 CDC42BPAQ5VT25 1732 aa27.82■■■□□ 2.04
TRIM39-209ENST00000428728 ZNF518AQ6AHZ1 1483 aa27.78■■■□□ 2.04
TRIM39-209ENST00000428728 ITSN2Q9NZM3 1697 aa27.78■■■□□ 2.04
TRIM39-209ENST00000428728 KDM5CP41229 1560 aa27.77■■■□□ 2.04
TRIM39-209ENST00000428728 ABCC1P33527 1531 aa27.74■■■□□ 2.03
TRIM39-209ENST00000428728 C9orf84Q5VXU9 1444 aa27.73■■■□□ 2.03
TRIM39-209ENST00000428728 ATP10AO60312 1499 aa27.72■■■□□ 2.03
TRIM39-209ENST00000428728 MLECQ14165 292 aa27.7■■■□□ 2.02
TRIM39-209ENST00000428728 ABCA6Q8N139 1617 aa27.7■■■□□ 2.02
TRIM39-209ENST00000428728 DIP2CQ9Y2E4 1556 aa27.69■■■□□ 2.02
TRIM39-209ENST00000428728 PLPPR3Q6T4P5 718 aa27.68■■■□□ 2.02
TRIM39-209ENST00000428728 LMTK3Q96Q04 1460 aa27.66■■■□□ 2.02
TRIM39-209ENST00000428728 AFAP1Q8N556 730 aa27.66■■■□□ 2.02
TRIM39-209ENST00000428728 ARHGEF12Q9NZN5 1544 aa27.66■■■□□ 2.02
TRIM39-209ENST00000428728 MYT1LQ9UL68 1186 aa27.65■■■□□ 2.02
TRIM39-209ENST00000428728 TRAPPC8Q9Y2L5 1435 aa27.63■■■□□ 2.01
TRIM39-209ENST00000428728 SAMD9LQ8IVG5 1584 aa27.63■■■□□ 2.01
TRIM39-209ENST00000428728 KIDINS220Q9ULH0 1771 aa27.61■■■□□ 2.01
TRIM39-209ENST00000428728 REREQ9P2R6 1566 aa27.6■■■□□ 2.01
TRIM39-209ENST00000428728 MLH3Q9UHC1 1453 aa27.59■■■□□ 2.01
TRIM39-209ENST00000428728 ILDR1Q86SU0 546 aaPredicted RBP27.59■■■□□ 2.01
TRIM39-209ENST00000428728 SYCP2Q9BX26 1530 aa27.58■■■□□ 2.01
TRIM39-209ENST00000428728 CEP162Q5TB80 1403 aa27.58■■■□□ 2
TRIM39-209ENST00000428728 GPATCH8Q9UKJ3 1502 aaKnown RBP27.57■■■□□ 2
TRIM39-209ENST00000428728 MTUS2Q5JR59 1369 aa27.54■■■□□ 2
TRIM39-209ENST00000428728 PREX1Q8TCU6 1659 aa27.54■■■□□ 2
TRIM39-209ENST00000428728 ZNF777Q9ULD5 760 aaPredicted RBP27.54■■■□□ 2
TRIM39-209ENST00000428728 EHBP1L1Q8N3D4 1523 aa27.52■■■□□ 2
TRIM39-209ENST00000428728 TIAM1Q13009 1591 aa27.5■■□□□ 1.99
TRIM39-209ENST00000428728 CCNB3Q8WWL7 1395 aa27.48■■□□□ 1.99
TRIM39-209ENST00000428728 C3P01024 1663 aa27.48■■□□□ 1.99
TRIM39-209ENST00000428728 AGLP35573 1532 aa27.47■■□□□ 1.99
TRIM39-209ENST00000428728 HSPA2P54652 639 aa27.47■■□□□ 1.99
TRIM39-209ENST00000428728 SUPT6HQ7KZ85 1726 aaKnown RBP27.46■■□□□ 1.99
TRIM39-209ENST00000428728 INO80Q9ULG1 1556 aaPredicted RBP27.45■■□□□ 1.99
TRIM39-209ENST00000428728 ATP7AQ04656 1500 aa27.44■■□□□ 1.98
TRIM39-209ENST00000428728 PLEKHH2Q8IVE3 1493 aa27.44■■□□□ 1.98
TRIM39-209ENST00000428728 CFDP1Q9UEE9 299 aaPredicted RBP27.43■■□□□ 1.98
TRIM39-209ENST00000428728 CEBPAP49715 358 aaPredicted RBP27.42■■□□□ 1.98
TRIM39-209ENST00000428728 HNRNPMP52272 730 aaKnown RBP eCLIP27.41■■□□□ 1.98
TRIM39-209ENST00000428728 KIAA1107Q9UPP5 1409 aa27.39■■□□□ 1.97
TRIM39-209ENST00000428728 SPAG9O60271 1321 aaKnown RBP27.39■■□□□ 1.97
TRIM39-209ENST00000428728 SETD1BQ9UPS6 1966 aaKnown RBP27.39■■□□□ 1.97
TRIM39-209ENST00000428728 ADGBQ8N7X0 1667 aa27.36■■□□□ 1.97
TRIM39-209ENST00000428728 PLXNC1O60486 1568 aa27.35■■□□□ 1.97
TRIM39-209ENST00000428728 MROH2AA6NES4 1674 aa27.34■■□□□ 1.97
TRIM39-209ENST00000428728 ESF1Q9H501 851 aaKnown RBP27.33■■□□□ 1.97
TRIM39-209ENST00000428728 UHRF1BP1Q6BDS2 1440 aa27.32■■□□□ 1.96
TRIM39-209ENST00000428728 CLTCQ00610 1675 aaKnown RBP27.31■■□□□ 1.96
TRIM39-209ENST00000428728 ZNF644Q9H582 1327 aaPredicted RBP27.3■■□□□ 1.96
TRIM39-209ENST00000428728 NCOA2Q15596 1464 aa27.3■■□□□ 1.96
TRIM39-209ENST00000428728 STRCQ7RTU9 1775 aa27.3■■□□□ 1.96
TRIM39-209ENST00000428728 LOC105371045A0A1W2PR82 267 aa27.29■■□□□ 1.96
TRIM39-209ENST00000428728 CNTLNQ9NXG0 1405 aa27.29■■□□□ 1.96
TRIM39-209ENST00000428728 A2MP01023 1474 aa27.29■■□□□ 1.96
TRIM39-209ENST00000428728 VPS8Q8N3P4 1428 aa27.27■■□□□ 1.96
TRIM39-209ENST00000428728 MBD5Q9P267 1494 aa27.25■■□□□ 1.95
TRIM39-209ENST00000428728 CAMSAP2Q08AD1 1489 aa27.25■■□□□ 1.95
TRIM39-209ENST00000428728 FBXO41Q8TF61 875 aa27.22■■□□□ 1.95
TRIM39-209ENST00000428728 CCDC141Q6ZP82 1450 aa27.19■■□□□ 1.94
TRIM39-209ENST00000428728 LRRC9Q6ZRR7 1453 aa27.19■■□□□ 1.94
TRIM39-209ENST00000428728 RTEL1-TNFRSF6BF6WH68 1400 aa27.16■■□□□ 1.94
TRIM39-209ENST00000428728 MYO3AQ8NEV4 1616 aa27.15■■□□□ 1.94
TRIM39-209ENST00000428728 NPATQ14207 1427 aa27.14■■□□□ 1.93
TRIM39-209ENST00000428728 ARHGEF5Q12774 1597 aa27.14■■□□□ 1.93
TRIM39-209ENST00000428728 ZMYM3Q14202 1370 aa27.13■■□□□ 1.93
TRIM39-209ENST00000428728 GGT6Q6P531 493 aa27.13■■□□□ 1.93
TRIM39-209ENST00000428728 ZNF142P52746 1687 aaPredicted RBP27.12■■□□□ 1.93
TRIM39-209ENST00000428728 MAP3K1Q13233 1512 aa27.09■■□□□ 1.93
TRIM39-209ENST00000428728 CAMSAP1Q5T5Y3 1602 aa27.07■■□□□ 1.92
TRIM39-209ENST00000428728 DHX29Q7Z478 1369 aaKnown RBP27.06■■□□□ 1.92
TRIM39-209ENST00000428728 CEP170BQ9Y4F5 1589 aaPredicted RBP27.05■■□□□ 1.92
TRIM39-209ENST00000428728 CERKQ8TCT0 537 aa27.04■■□□□ 1.92
TRIM39-209ENST00000428728 DMRT2Q9Y5R5 561 aa27.04■■□□□ 1.92
TRIM39-209ENST00000428728 PTPRKQ15262 1439 aa27.04■■□□□ 1.92
TRIM39-209ENST00000428728 NCOA1Q15788 1441 aa27.04■■□□□ 1.92
TRIM39-209ENST00000428728 KANK4Q5T7N3 995 aaPredicted RBP27.03■■□□□ 1.92
TRIM39-209ENST00000428728 KDM5DQ9BY66 1539 aa27.01■■□□□ 1.91
TRIM39-209ENST00000428728 PTPRTO14522 1441 aa27.01■■□□□ 1.91
TRIM39-209ENST00000428728 MAST1Q9Y2H9 1570 aa27.01■■□□□ 1.91
TRIM39-209ENST00000428728 RSPH4AQ5TD94 716 aa27■■□□□ 1.91
TRIM39-209ENST00000428728 MYOM3Q5VTT5 1437 aa26.99■■□□□ 1.91
TRIM39-209ENST00000428728 KIF3BO15066 747 aa26.99■■□□□ 1.91
TRIM39-209ENST00000428728 PPP6R1Q9UPN7 881 aa26.98■■□□□ 1.91
TRIM39-209ENST00000428728 FAM135AQ9P2D6 1515 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms