RNA–Protein interactions for RNA: ENST00000428082.6

TVP23C-203, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TVP23C, Length 1,911 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-203ENST00000428082 FAM50AQ14320 339 aaKnown RBP23.27■■□□□ 1.32
TVP23C-203ENST00000428082 DIP2BQ9P265 1576 aa23.26■■□□□ 1.31
TVP23C-203ENST00000428082 PLCH2O75038 1416 aa23.25■■□□□ 1.31
TVP23C-203ENST00000428082 TCOF1Q13428 1488 aaKnown RBP23.24■■□□□ 1.31
TVP23C-203ENST00000428082 ZNF644Q9H582 1327 aaPredicted RBP23.24■■□□□ 1.31
TVP23C-203ENST00000428082 ARHGAP5Q13017 1502 aa23.24■■□□□ 1.31
TVP23C-203ENST00000428082 GLI2P10070 1586 aa23.23■■□□□ 1.31
TVP23C-203ENST00000428082 ZNF777Q9ULD5 760 aaPredicted RBP23.23■■□□□ 1.31
TVP23C-203ENST00000428082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.21■■□□□ 1.31
TVP23C-203ENST00000428082 FAM69CQ0P6D2 419 aa23.21■■□□□ 1.31
TVP23C-203ENST00000428082 CAMSAP2Q08AD1 1489 aa23.2■■□□□ 1.31
TVP23C-203ENST00000428082 CD109Q6YHK3 1445 aa23.2■■□□□ 1.3
TVP23C-203ENST00000428082 MAP3K4Q9Y6R4 1608 aa23.19■■□□□ 1.3
TVP23C-203ENST00000428082 KIF13AQ9H1H9 1805 aa23.19■■□□□ 1.3
TVP23C-203ENST00000428082 ARAP3Q8WWN8 1544 aa23.19■■□□□ 1.3
TVP23C-203ENST00000428082 SAMD9LQ8IVG5 1584 aa23.18■■□□□ 1.3
TVP23C-203ENST00000428082 ITGAEP38570 1179 aa23.17■■□□□ 1.3
TVP23C-203ENST00000428082 EFCAB2Q5VUJ9 269 aa23.16■■□□□ 1.3
TVP23C-203ENST00000428082 DIEXFQ68CQ4 756 aaKnown RBP23.16■■□□□ 1.3
TVP23C-203ENST00000428082 FANCAO15360 1455 aa23.14■■□□□ 1.3
TVP23C-203ENST00000428082 CLSPNQ9HAW4 1339 aa23.11■■□□□ 1.29
TVP23C-203ENST00000428082 TSPOAP1O95153 1857 aa23.11■■□□□ 1.29
TVP23C-203ENST00000428082 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
TVP23C-203ENST00000428082 DNMT1P26358 1616 aaKnown RBP23.1■■□□□ 1.29
TVP23C-203ENST00000428082 SYCP2Q9BX26 1530 aa23.09■■□□□ 1.29
TVP23C-203ENST00000428082 HNRNPMP52272 730 aaKnown RBP eCLIP23.09■■□□□ 1.292e-6■■■■□ 22
TVP23C-203ENST00000428082 PTPRKQ15262 1439 aa23.08■■□□□ 1.29
TVP23C-203ENST00000428082 ABCC1P33527 1531 aa23.08■■□□□ 1.29
TVP23C-203ENST00000428082 MBD5Q9P267 1494 aa23.07■■□□□ 1.28
TVP23C-203ENST00000428082 PPRC1Q5VV67 1664 aaKnown RBP23.07■■□□□ 1.28
TVP23C-203ENST00000428082 DAPK1P53355 1430 aa23.07■■□□□ 1.28
TVP23C-203ENST00000428082 ARHGEF12Q9NZN5 1544 aa23.07■■□□□ 1.28
TVP23C-203ENST00000428082 PLEKHH2Q8IVE3 1493 aa23.07■■□□□ 1.28
TVP23C-203ENST00000428082 ABCC5O15440 1437 aa23.06■■□□□ 1.28
TVP23C-203ENST00000428082 CFAP74Q9C0B2 1584 aa23.06■■□□□ 1.28
TVP23C-203ENST00000428082 AKNAQ7Z591 1439 aa23.05■■□□□ 1.28
TVP23C-203ENST00000428082 KIAA1107Q9UPP5 1409 aa23.05■■□□□ 1.28
TVP23C-203ENST00000428082 ARHGEF5Q12774 1597 aa23.04■■□□□ 1.28
TVP23C-203ENST00000428082 ADGRL1O94910 1474 aa23.03■■□□□ 1.28
TVP23C-203ENST00000428082 CROCC2H7BZ55 1655 aa23.03■■□□□ 1.28
TVP23C-203ENST00000428082 NEO1Q92859 1461 aa23.02■■□□□ 1.28
TVP23C-203ENST00000428082 CHIC2Q9UKJ5 165 aa23.01■■□□□ 1.27
TVP23C-203ENST00000428082 CCDC141Q6ZP82 1450 aa23■■□□□ 1.27
TVP23C-203ENST00000428082 TRHP20396 242 aaPredicted RBP23■■□□□ 1.27
TVP23C-203ENST00000428082 SCAPERQ9BY12 1400 aa23■■□□□ 1.27
TVP23C-203ENST00000428082 TRAPPC8Q9Y2L5 1435 aa22.99■■□□□ 1.27
TVP23C-203ENST00000428082 RSPH4AQ5TD94 716 aa22.98■■□□□ 1.27
TVP23C-203ENST00000428082 TEX14Q8IWB6 1497 aa22.98■■□□□ 1.27
TVP23C-203ENST00000428082 SHANK2Q9UPX8 1470 aa22.95■■□□□ 1.26
TVP23C-203ENST00000428082 TSPY4P0CV99 314 aa22.94■■□□□ 1.26
TVP23C-203ENST00000428082 TSPY10P0CW01 314 aa22.94■■□□□ 1.26
TVP23C-203ENST00000428082 AFAP1Q8N556 730 aa22.94■■□□□ 1.26
TVP23C-203ENST00000428082 C9orf84Q5VXU9 1444 aa22.94■■□□□ 1.26
TVP23C-203ENST00000428082 ADGBQ8N7X0 1667 aa22.93■■□□□ 1.26
TVP23C-203ENST00000428082 CENPBP07199 599 aaPredicted RBP22.93■■□□□ 1.26
TVP23C-203ENST00000428082 RRP7BPQ9NSQ0 103 aa22.91■■□□□ 1.26
TVP23C-203ENST00000428082 MAST1Q9Y2H9 1570 aa22.9■■□□□ 1.26
TVP23C-203ENST00000428082 POGZQ7Z3K3 1410 aa22.9■■□□□ 1.26
TVP23C-203ENST00000428082 ROCK1Q13464 1354 aa22.9■■□□□ 1.26
TVP23C-203ENST00000428082 ADGRL2O95490 1459 aa22.9■■□□□ 1.26
TVP23C-203ENST00000428082 DHX57Q6P158 1386 aaKnown RBP22.89■■□□□ 1.25
TVP23C-203ENST00000428082 ZNF518AQ6AHZ1 1483 aa22.89■■□□□ 1.25
TVP23C-203ENST00000428082 DENND4BO75064 1496 aaPredicted RBP22.88■■□□□ 1.25
TVP23C-203ENST00000428082 HFM1A2PYH4 1435 aa22.88■■□□□ 1.25
TVP23C-203ENST00000428082 NCOA1Q15788 1441 aa22.88■■□□□ 1.25
TVP23C-203ENST00000428082 NAIPQ13075 1403 aa22.88■■□□□ 1.25
TVP23C-203ENST00000428082 ACIN1Q9UKV3 1341 aaKnown RBP22.87■■□□□ 1.25
TVP23C-203ENST00000428082 RICTORQ6R327 1708 aa22.87■■□□□ 1.25
TVP23C-203ENST00000428082 RAPGEF3O95398 923 aa22.87■■□□□ 1.25
TVP23C-203ENST00000428082 SETD5Q9C0A6 1442 aa22.86■■□□□ 1.25
TVP23C-203ENST00000428082 ANKRD30AQ9BXX3 1397 aa22.86■■□□□ 1.25
TVP23C-203ENST00000428082 GCC2Q8IWJ2 1684 aa22.86■■□□□ 1.25
TVP23C-203ENST00000428082 SPAG9O60271 1321 aaKnown RBP22.86■■□□□ 1.25
TVP23C-203ENST00000428082 KDM5CP41229 1560 aa22.85■■□□□ 1.25
TVP23C-203ENST00000428082 SCAF1Q9H7N4 1312 aaKnown RBP22.85■■□□□ 1.25
TVP23C-203ENST00000428082 ZFYVE16Q7Z3T8 1539 aa22.84■■□□□ 1.25
TVP23C-203ENST00000428082 FRMPD1Q5SYB0 1578 aa22.84■■□□□ 1.25
TVP23C-203ENST00000428082 INO80Q9ULG1 1556 aaPredicted RBP22.84■■□□□ 1.25
TVP23C-203ENST00000428082 RAB3GAP2Q9H2M9 1393 aa22.82■■□□□ 1.24
TVP23C-203ENST00000428082 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
TVP23C-203ENST00000428082 COL17A1Q9UMD9 1497 aaPredicted RBP22.82■■□□□ 1.24
TVP23C-203ENST00000428082 ATP7AQ04656 1500 aa22.82■■□□□ 1.24
TVP23C-203ENST00000428082 PLXNC1O60486 1568 aa22.82■■□□□ 1.24
TVP23C-203ENST00000428082 KIDINS220Q9ULH0 1771 aa22.81■■□□□ 1.24
TVP23C-203ENST00000428082 KDM6BO15054 1643 aa22.8■■□□□ 1.24
TVP23C-203ENST00000428082 KIF15Q9NS87 1388 aa22.8■■□□□ 1.24
TVP23C-203ENST00000428082 MYT1LQ9UL68 1186 aa22.79■■□□□ 1.24
TVP23C-203ENST00000428082 HECW2Q9P2P5 1572 aa22.79■■□□□ 1.24
TVP23C-203ENST00000428082 MLH3Q9UHC1 1453 aa22.78■■□□□ 1.24
TVP23C-203ENST00000428082 ZMYM4Q5VZL5 1548 aa22.74■■□□□ 1.23
TVP23C-203ENST00000428082 ANKRD50Q9ULJ7 1429 aa22.73■■□□□ 1.23
TVP23C-203ENST00000428082 DUOX2Q9NRD8 1548 aa22.72■■□□□ 1.23
TVP23C-203ENST00000428082 ABCA6Q8N139 1617 aa22.72■■□□□ 1.23
TVP23C-203ENST00000428082 NEUROD1Q13562 356 aa22.7■■□□□ 1.23
TVP23C-203ENST00000428082 YEATS2Q9ULM3 1422 aa22.69■■□□□ 1.22
TVP23C-203ENST00000428082 DIP2CQ9Y2E4 1556 aa22.68■■□□□ 1.22
TVP23C-203ENST00000428082 MAGI2Q86UL8 1455 aa22.67■■□□□ 1.22
TVP23C-203ENST00000428082 ERBINQ96RT1 1412 aa22.66■■□□□ 1.22
TVP23C-203ENST00000428082 DHX29Q7Z478 1369 aaKnown RBP22.64■■□□□ 1.22
TVP23C-203ENST00000428082 A2MP01023 1474 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms