RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 ADAMTSL3P82987 1691 aa29.82■■■□□ 2.36
PSPC1-202ENST00000427943 PREX2Q70Z35 1606 aa29.81■■■□□ 2.36
PSPC1-202ENST00000427943 SCAPERQ9BY12 1400 aa29.8■■■□□ 2.36
PSPC1-202ENST00000427943 ZFYVE16Q7Z3T8 1539 aa29.8■■■□□ 2.36
PSPC1-202ENST00000427943 POGZQ7Z3K3 1410 aa29.79■■■□□ 2.36
PSPC1-202ENST00000427943 CDC42BPAQ5VT25 1732 aa29.77■■■□□ 2.36
PSPC1-202ENST00000427943 SIGLEC1Q9BZZ2 1709 aa29.77■■■□□ 2.36
PSPC1-202ENST00000427943 EFCAB2Q5VUJ9 269 aa29.76■■■□□ 2.35
PSPC1-202ENST00000427943 YEATS2Q9ULM3 1422 aa29.76■■■□□ 2.35
PSPC1-202ENST00000427943 MADDQ8WXG6 1647 aa29.74■■■□□ 2.35
PSPC1-202ENST00000427943 CEP162Q5TB80 1403 aa29.73■■■□□ 2.35
PSPC1-202ENST00000427943 ARID4BQ4LE39 1312 aaPredicted RBP29.72■■■□□ 2.35
PSPC1-202ENST00000427943 MAGI2Q86UL8 1455 aa29.71■■■□□ 2.35
PSPC1-202ENST00000427943 HECW2Q9P2P5 1572 aa29.71■■■□□ 2.35
PSPC1-202ENST00000427943 RIMS1Q86UR5 1692 aaKnown RBP29.67■■■□□ 2.34
PSPC1-202ENST00000427943 ITSN2Q9NZM3 1697 aa29.67■■■□□ 2.34
PSPC1-202ENST00000427943 KDM5CP41229 1560 aa29.66■■■□□ 2.34
PSPC1-202ENST00000427943 ZNF518AQ6AHZ1 1483 aa29.66■■■□□ 2.34
PSPC1-202ENST00000427943 ABCC1P33527 1531 aa29.66■■■□□ 2.34
PSPC1-202ENST00000427943 PTPRMP28827 1452 aa29.65■■■□□ 2.34
PSPC1-202ENST00000427943 FER1L4A9Z1Z3 1794 aa29.58■■■□□ 2.33
PSPC1-202ENST00000427943 ARHGEF12Q9NZN5 1544 aa29.58■■■□□ 2.33
PSPC1-202ENST00000427943 SAMD9LQ8IVG5 1584 aa29.57■■■□□ 2.32
PSPC1-202ENST00000427943 ATP10AO60312 1499 aa29.56■■■□□ 2.32
PSPC1-202ENST00000427943 C9orf84Q5VXU9 1444 aa29.56■■■□□ 2.32
PSPC1-202ENST00000427943 AFAP1Q8N556 730 aa29.56■■■□□ 2.32
PSPC1-202ENST00000427943 DIP2CQ9Y2E4 1556 aa29.56■■■□□ 2.32
PSPC1-202ENST00000427943 MTUS2Q5JR59 1369 aa29.55■■■□□ 2.32
PSPC1-202ENST00000427943 LOC105371045A0A1W2PR82 267 aa29.55■■■□□ 2.32
PSPC1-202ENST00000427943 ABCA6Q8N139 1617 aa29.55■■■□□ 2.32
PSPC1-202ENST00000427943 GPATCH8Q9UKJ3 1502 aaKnown RBP29.55■■■□□ 2.32
PSPC1-202ENST00000427943 EHBP1L1Q8N3D4 1523 aa29.54■■■□□ 2.32
PSPC1-202ENST00000427943 TRAPPC8Q9Y2L5 1435 aa29.54■■■□□ 2.32
PSPC1-202ENST00000427943 SYCP2Q9BX26 1530 aa29.5■■■□□ 2.31
PSPC1-202ENST00000427943 MYT1LQ9UL68 1186 aa29.5■■■□□ 2.31
PSPC1-202ENST00000427943 KIDINS220Q9ULH0 1771 aa29.49■■■□□ 2.31
PSPC1-202ENST00000427943 MLECQ14165 292 aa29.49■■■□□ 2.31
PSPC1-202ENST00000427943 ZNF777Q9ULD5 760 aaPredicted RBP29.49■■■□□ 2.31
PSPC1-202ENST00000427943 TIAM1Q13009 1591 aa29.48■■■□□ 2.31
PSPC1-202ENST00000427943 MLH3Q9UHC1 1453 aa29.48■■■□□ 2.31
PSPC1-202ENST00000427943 CCNB3Q8WWL7 1395 aa29.47■■■□□ 2.31
PSPC1-202ENST00000427943 REREQ9P2R6 1566 aa29.44■■■□□ 2.3
PSPC1-202ENST00000427943 PLPPR3Q6T4P5 718 aa29.41■■■□□ 2.3
PSPC1-202ENST00000427943 SUPT6HQ7KZ85 1726 aaKnown RBP29.41■■■□□ 2.3
PSPC1-202ENST00000427943 VPS8Q8N3P4 1428 aa29.39■■■□□ 2.3
PSPC1-202ENST00000427943 CFDP1Q9UEE9 299 aaPredicted RBP29.39■■■□□ 2.3
PSPC1-202ENST00000427943 PLEKHH2Q8IVE3 1493 aa29.36■■■□□ 2.29
PSPC1-202ENST00000427943 HNRNPMP52272 730 aaKnown RBP eCLIP29.35■■■□□ 2.29
PSPC1-202ENST00000427943 INO80Q9ULG1 1556 aaPredicted RBP29.35■■■□□ 2.29
PSPC1-202ENST00000427943 LMTK3Q96Q04 1460 aa29.34■■■□□ 2.29
PSPC1-202ENST00000427943 KIAA1107Q9UPP5 1409 aa29.33■■■□□ 2.29
PSPC1-202ENST00000427943 ATP7AQ04656 1500 aa29.33■■■□□ 2.29
PSPC1-202ENST00000427943 AGLP35573 1532 aa29.32■■■□□ 2.28
PSPC1-202ENST00000427943 NCOA2Q15596 1464 aa29.31■■■□□ 2.28
PSPC1-202ENST00000427943 SPAG9O60271 1321 aaKnown RBP29.29■■■□□ 2.28
PSPC1-202ENST00000427943 ZNF644Q9H582 1327 aaPredicted RBP29.27■■■□□ 2.28
PSPC1-202ENST00000427943 C3P01024 1663 aa29.25■■■□□ 2.27
PSPC1-202ENST00000427943 LRRC9Q6ZRR7 1453 aa29.24■■■□□ 2.27
PSPC1-202ENST00000427943 PREX1Q8TCU6 1659 aa29.24■■■□□ 2.27
PSPC1-202ENST00000427943 ADGBQ8N7X0 1667 aa29.22■■■□□ 2.27
PSPC1-202ENST00000427943 CAMSAP2Q08AD1 1489 aa29.22■■■□□ 2.27
PSPC1-202ENST00000427943 MBD5Q9P267 1494 aa29.22■■■□□ 2.27
PSPC1-202ENST00000427943 PLXNC1O60486 1568 aa29.22■■■□□ 2.27
PSPC1-202ENST00000427943 CEBPAP49715 358 aaPredicted RBP29.2■■■□□ 2.26
PSPC1-202ENST00000427943 MAP3K1Q13233 1512 aa29.18■■■□□ 2.26
PSPC1-202ENST00000427943 A2MP01023 1474 aa29.17■■■□□ 2.26
PSPC1-202ENST00000427943 HSPA2P54652 639 aa29.16■■■□□ 2.26
PSPC1-202ENST00000427943 MROH2AA6NES4 1674 aa29.13■■■□□ 2.25
PSPC1-202ENST00000427943 CCDC141Q6ZP82 1450 aa29.13■■■□□ 2.25
PSPC1-202ENST00000427943 KANK4Q5T7N3 995 aaPredicted RBP29.12■■■□□ 2.25
PSPC1-202ENST00000427943 CLTCQ00610 1675 aaKnown RBP29.12■■■□□ 2.25
PSPC1-202ENST00000427943 ESF1Q9H501 851 aaKnown RBP29.11■■■□□ 2.25
PSPC1-202ENST00000427943 SETD1BQ9UPS6 1966 aaKnown RBP29.1■■■□□ 2.25
PSPC1-202ENST00000427943 ARHGEF5Q12774 1597 aa29.09■■■□□ 2.25
PSPC1-202ENST00000427943 RTEL1-TNFRSF6BF6WH68 1400 aa29.08■■■□□ 2.25
PSPC1-202ENST00000427943 CNTLNQ9NXG0 1405 aa29.08■■■□□ 2.25
PSPC1-202ENST00000427943 UHRF1BP1Q6BDS2 1440 aa29.03■■■□□ 2.24
PSPC1-202ENST00000427943 MYOM3Q5VTT5 1437 aa29.02■■■□□ 2.24
PSPC1-202ENST00000427943 ILDR1Q86SU0 546 aaPredicted RBP28.99■■■□□ 2.23
PSPC1-202ENST00000427943 GGT6Q6P531 493 aa28.98■■■□□ 2.23
PSPC1-202ENST00000427943 STRCQ7RTU9 1775 aa28.97■■■□□ 2.23
PSPC1-202ENST00000427943 RSPH4AQ5TD94 716 aa28.96■■■□□ 2.23
PSPC1-202ENST00000427943 DHX29Q7Z478 1369 aaKnown RBP28.96■■■□□ 2.23
PSPC1-202ENST00000427943 MIA2Q96PC5 1412 aa28.95■■■□□ 2.23
PSPC1-202ENST00000427943 APLP2Q06481 763 aa28.95■■■□□ 2.22
PSPC1-202ENST00000427943 MAST1Q9Y2H9 1570 aa28.95■■■□□ 2.22
PSPC1-202ENST00000427943 ZMYM3Q14202 1370 aa28.94■■■□□ 2.22
PSPC1-202ENST00000427943 CROCC2H7BZ55 1655 aa28.91■■■□□ 2.22
PSPC1-202ENST00000427943 MYO3AQ8NEV4 1616 aa28.91■■■□□ 2.22
PSPC1-202ENST00000427943 PTPN23Q9H3S7 1636 aa28.91■■■□□ 2.22
PSPC1-202ENST00000427943 NPATQ14207 1427 aa28.9■■■□□ 2.22
PSPC1-202ENST00000427943 TSPY4P0CV99 314 aa28.89■■■□□ 2.22
PSPC1-202ENST00000427943 TSPY10P0CW01 314 aa28.89■■■□□ 2.22
PSPC1-202ENST00000427943 ZNF142P52746 1687 aaPredicted RBP28.86■■■□□ 2.21
PSPC1-202ENST00000427943 KIF3BO15066 747 aa28.86■■■□□ 2.21
PSPC1-202ENST00000427943 PTPRKQ15262 1439 aa28.85■■■□□ 2.21
PSPC1-202ENST00000427943 KDM5DQ9BY66 1539 aa28.84■■■□□ 2.21
PSPC1-202ENST00000427943 PPP6R1Q9UPN7 881 aa28.82■■■□□ 2.2
PSPC1-202ENST00000427943 RNF17Q9BXT8 1623 aaKnown RBP28.82■■■□□ 2.2
PSPC1-202ENST00000427943 EIF2AK4Q9P2K8 1649 aaKnown RBP28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 814 ms