RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 PPP1R37O75864 691 aa7.94□□□□□ -1.14
SF3B1-205ENST00000424674 DCAF8L2P0C7V8 631 aa7.94□□□□□ -1.14
SF3B1-205ENST00000424674 EMP3P54852 163 aa7.94□□□□□ -1.14
SF3B1-205ENST00000424674 NKX1-1Q15270 411 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-205ENST00000424674 CDAN1Q8IWY9 1227 aa7.92□□□□□ -1.14
SF3B1-205ENST00000424674 PLSCR2Q9NRY7 297 aa7.92□□□□□ -1.14
SF3B1-205ENST00000424674 HOXB1P14653 301 aaPredicted RBP7.91□□□□□ -1.14
SF3B1-205ENST00000424674 RYDENQ9NUL5 291 aaKnown RBP7.91□□□□□ -1.14
SF3B1-205ENST00000424674 C2orf72A6NCS6 295 aa7.9□□□□□ -1.14
SF3B1-205ENST00000424674 KIF3CO14782 793 aa7.9□□□□□ -1.14
SF3B1-205ENST00000424674 TMC2Q8TDI7 906 aa7.89□□□□□ -1.15
SF3B1-205ENST00000424674 ZSWIM6Q9HCJ5 1215 aa7.89□□□□□ -1.15
SF3B1-205ENST00000424674 RTN4Q9NQC3 1192 aaKnown RBP7.88□□□□□ -1.15
SF3B1-205ENST00000424674 FAM205CA6NFA0 338 aa7.87□□□□□ -1.15
SF3B1-205ENST00000424674 AMER1Q5JTC6 1135 aaPredicted RBP7.87□□□□□ -1.15
SF3B1-205ENST00000424674 HS3ST6Q96QI5 342 aa7.87□□□□□ -1.15
SF3B1-205ENST00000424674 GPR153Q6NV75 609 aa7.84□□□□□ -1.15
SF3B1-205ENST00000424674 ERBB3P21860 1342 aa7.83□□□□□ -1.16
SF3B1-205ENST00000424674 POTEB3A0JP26 581 aa7.83□□□□□ -1.16
SF3B1-205ENST00000424674 POTEBQ6S5H4 581 aa7.83□□□□□ -1.16
SF3B1-205ENST00000424674 GTPBP6O43824 516 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-205ENST00000424674 ARSIQ5FYB1 569 aa7.81□□□□□ -1.16
SF3B1-205ENST00000424674 SLC34A2O95436 690 aa7.8□□□□□ -1.16
SF3B1-205ENST00000424674 FOXK1P85037 733 aa7.8□□□□□ -1.16
SF3B1-205ENST00000424674 GPHNQ9NQX3 736 aaPredicted RBP7.8□□□□□ -1.16
SF3B1-205ENST00000424674 VARS2Q5ST30 1063 aaKnown RBP7.79□□□□□ -1.16
SF3B1-205ENST00000424674 KHSRPQ92945 711 aaKnown RBP eCLIP7.78□□□□□ -1.16
SF3B1-205ENST00000424674 PCDHGA4Q9Y5G9 962 aa7.78□□□□□ -1.16
SF3B1-205ENST00000424674 DSG2Q14126 1118 aa7.77□□□□□ -1.17
SF3B1-205ENST00000424674 PLPP6Q8IY26 295 aa7.77□□□□□ -1.17
SF3B1-205ENST00000424674 KRTAP3-3Q9BYR6 98 aa7.77□□□□□ -1.17
SF3B1-205ENST00000424674 KRTAP3-2Q9BYR7 98 aa7.77□□□□□ -1.17
SF3B1-205ENST00000424674 NUDT7P0C024 238 aa7.76□□□□□ -1.17
SF3B1-205ENST00000424674 CRISPLD2Q9H0B8 497 aa7.76□□□□□ -1.17
SF3B1-205ENST00000424674 ZNF316A6NFI3 1004 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-205ENST00000424674 ZNF687Q8N1G0 1237 aa7.73□□□□□ -1.17
SF3B1-205ENST00000424674 PTCD2Q8WV60 388 aaKnown RBP7.73□□□□□ -1.17
SF3B1-205ENST00000424674 BBXQ8WY36 941 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-205ENST00000424674 NCKAP5LQ9HCH0 1330 aa7.73□□□□□ -1.17
SF3B1-205ENST00000424674 PPP1R15BQ5SWA1 713 aa7.72□□□□□ -1.17
SF3B1-205ENST00000424674 SPNS2Q8IVW8 549 aa7.72□□□□□ -1.17
SF3B1-205ENST00000424674 PDE4AP27815 886 aa7.71□□□□□ -1.18
SF3B1-205ENST00000424674 LHX6Q9UPM6 363 aa7.71□□□□□ -1.18
SF3B1-205ENST00000424674 TBC1D12O60347 775 aa7.68□□□□□ -1.18
SF3B1-205ENST00000424674 MMRN1Q13201 1228 aa7.68□□□□□ -1.18
SF3B1-205ENST00000424674 DDX27Q96GQ7 796 aaKnown RBP7.68□□□□□ -1.18
SF3B1-205ENST00000424674 LARP6Q9BRS8 491 aaKnown RBP7.68□□□□□ -1.18
SF3B1-205ENST00000424674 KDM4FA0A1W2PPD8 638 aa7.67□□□□□ -1.18
SF3B1-205ENST00000424674 UPF1Q92900 1129 aaKnown RBP eCLIP7.67□□□□□ -1.18
SF3B1-205ENST00000424674 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.67□□□□□ -1.18
SF3B1-205ENST00000424674 PSDA5PKW4 1024 aaPredicted RBP7.66□□□□□ -1.18
SF3B1-205ENST00000424674 MFSD10Q14728 455 aa7.66□□□□□ -1.18
SF3B1-205ENST00000424674 CADPS2Q86UW7 1296 aa7.66□□□□□ -1.18
SF3B1-205ENST00000424674 OXER1Q8TDS5 423 aa7.66□□□□□ -1.18
SF3B1-205ENST00000424674 PBX2P40425 430 aa7.65□□□□□ -1.18
SF3B1-205ENST00000424674 SPRYD3Q8NCJ5 442 aa7.64□□□□□ -1.19
SF3B1-205ENST00000424674 LSM11P83369 360 aaKnown RBP eCLIP7.62□□□□□ -1.191e-7■□□□□ 9.1
SF3B1-205ENST00000424674 PPP4R3BQ5MIZ7 849 aa7.61□□□□□ -1.19
SF3B1-205ENST00000424674 POTEEQ6S8J3 1075 aa7.6□□□□□ -1.19
SF3B1-205ENST00000424674 AXIN2Q9Y2T1 843 aa7.6□□□□□ -1.19
SF3B1-205ENST00000424674 PTGER2P43116 358 aa7.59□□□□□ -1.19
SF3B1-205ENST00000424674 ANKRD13DQ6ZTN6 518 aa7.59□□□□□ -1.19
SF3B1-205ENST00000424674 PAXIP1Q6ZW49 1069 aaPredicted RBP7.59□□□□□ -1.19
SF3B1-205ENST00000424674 CFAP44Q96MT7 982 aa7.59□□□□□ -1.19
SF3B1-205ENST00000424674 EMILIN3Q9NT22 766 aa7.58□□□□□ -1.2
SF3B1-205ENST00000424674 ARHGAP33O14559 1287 aa7.57□□□□□ -1.2
SF3B1-205ENST00000424674 EVI5O60447 810 aa7.57□□□□□ -1.2
SF3B1-205ENST00000424674 MAP3K9P80192 1104 aa7.57□□□□□ -1.2
SF3B1-205ENST00000424674 MYT1LQ9UL68 1186 aa7.57□□□□□ -1.2
SF3B1-205ENST00000424674 ZNF454Q8N9F8 522 aa7.56□□□□□ -1.2
SF3B1-205ENST00000424674 RNF166Q96A37 237 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-205ENST00000424674 CAMK2BQ13554 666 aa7.55□□□□□ -1.2
SF3B1-205ENST00000424674 ANO8Q9HCE9 1232 aaPredicted RBP7.55□□□□□ -1.2
SF3B1-205ENST00000424674 JPH4Q96JJ6 628 aa7.54□□□□□ -1.2
SF3B1-205ENST00000424674 KCNH8Q96L42 1107 aa7.54□□□□□ -1.2
SF3B1-205ENST00000424674 PSEN2P49810 448 aa7.53□□□□□ -1.2
SF3B1-205ENST00000424674 FOSBP53539 338 aa7.53□□□□□ -1.2
SF3B1-205ENST00000424674 KCNK17Q96T54 332 aa7.53□□□□□ -1.2
SF3B1-205ENST00000424674 DMRTA1Q5VZB9 504 aa7.52□□□□□ -1.21
SF3B1-205ENST00000424674 ADGRD1Q6QNK2 874 aa7.52□□□□□ -1.21
SF3B1-205ENST00000424674 TK2O00142 265 aa7.51□□□□□ -1.21
SF3B1-205ENST00000424674 BCL2L12Q9HB09 334 aa7.51□□□□□ -1.21
SF3B1-205ENST00000424674 DPYSL4O14531 572 aa7.5□□□□□ -1.21
SF3B1-205ENST00000424674 ZDHHC16Q969W1 377 aa7.5□□□□□ -1.21
SF3B1-205ENST00000424674 PTPREP23469 700 aa7.48□□□□□ -1.21
SF3B1-205ENST00000424674 ADAM33Q9BZ11 813 aa7.47□□□□□ -1.21
SF3B1-205ENST00000424674 WDR70Q9NW82 654 aa7.47□□□□□ -1.21
SF3B1-205ENST00000424674 PCDHGA10Q9Y5H3 936 aa7.47□□□□□ -1.21
SF3B1-205ENST00000424674 HRO43593 1189 aa7.46□□□□□ -1.22
SF3B1-205ENST00000424674 PHF14O94880 888 aa7.45□□□□□ -1.22
SF3B1-205ENST00000424674 E2F4Q16254 413 aa7.45□□□□□ -1.22
SF3B1-205ENST00000424674 TYW1BQ6NUM6 668 aa7.45□□□□□ -1.22
SF3B1-205ENST00000424674 FBXW7Q969H0 707 aa7.45□□□□□ -1.22
SF3B1-205ENST00000424674 PDIA6Q15084 440 aa7.44□□□□□ -1.22
SF3B1-205ENST00000424674 SLC4A5Q9BY07 1137 aa7.44□□□□□ -1.22
SF3B1-205ENST00000424674 VPS9D1Q9Y2B5 631 aa7.44□□□□□ -1.22
SF3B1-205ENST00000424674 ZBED2Q9BTP6 218 aa7.43□□□□□ -1.22
SF3B1-205ENST00000424674 SPDYE16A6NNV3 312 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-205ENST00000424674 PPP1R3GB7ZBB8 358 aa7.42□□□□□ -1.22
SF3B1-205ENST00000424674 STAC3Q96MF2 364 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms