RNA–Protein interactions for RNA: ENST00000422324.1

PPP1R9A-204, Transcript of protein phosphatase 1 regulatory subunit 9A, human

TSL 2

Gene PPP1R9A, Length 512 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP1R9A-204	ENST00000422324	SCAPER	Q9BY12	1400 aa		43.12	■■■■■ 4.49
PPP1R9A-204	ENST00000422324	ZMYM4	Q5VZL5	1548 aa		43.12	■■■■■ 4.49
PPP1R9A-204	ENST00000422324	CDC42BPB	Q9Y5S2	1711 aa		43.11	■■■■■ 4.49
PPP1R9A-204	ENST00000422324	POGZ	Q7Z3K3	1410 aa		43.09	■■■■■ 4.49
PPP1R9A-204	ENST00000422324	ARHGEF40	Q8TER5	1519 aa		43.07	■■■■■ 4.48
PPP1R9A-204	ENST00000422324	CDC42BPA	Q5VT25	1732 aa		43.04	■■■■■ 4.48
PPP1R9A-204	ENST00000422324	VPS8	Q8N3P4	1428 aa		43.03	■■■■■ 4.48
PPP1R9A-204	ENST00000422324	MTUS2	Q5JR59	1369 aa		43.03	■■■■■ 4.48
PPP1R9A-204	ENST00000422324	MAGI2	Q86UL8	1455 aa		42.99	■■■■■ 4.47
PPP1R9A-204	ENST00000422324	EHBP1L1	Q8N3D4	1523 aa		42.98	■■■■■ 4.47
PPP1R9A-204	ENST00000422324	ZFYVE16	Q7Z3T8	1539 aa		42.96	■■■■■ 4.47
PPP1R9A-204	ENST00000422324	ABCC1	P33527	1531 aa		42.93	■■■■■ 4.46
PPP1R9A-204	ENST00000422324	GPATCH8	Q9UKJ3	1502 aa	Known RBP	42.93	■■■■■ 4.46
PPP1R9A-204	ENST00000422324	ZNF518A	Q6AHZ1	1483 aa		42.93	■■■■■ 4.46
PPP1R9A-204	ENST00000422324	YEATS2	Q9ULM3	1422 aa		42.9	■■■■■ 4.46
PPP1R9A-204	ENST00000422324	KDM5C	P41229	1560 aa		42.89	■■■■■ 4.46
PPP1R9A-204	ENST00000422324	TIAM1	Q13009	1591 aa		42.88	■■■■■ 4.45
PPP1R9A-204	ENST00000422324	ARHGEF12	Q9NZN5	1544 aa		42.85	■■■■■ 4.45
PPP1R9A-204	ENST00000422324	ITSN2	Q9NZM3	1697 aa		42.85	■■■■■ 4.45
PPP1R9A-204	ENST00000422324	CCNB3	Q8WWL7	1395 aa		42.84	■■■■■ 4.45
PPP1R9A-204	ENST00000422324	SAMD9L	Q8IVG5	1584 aa		42.82	■■■■■ 4.45
PPP1R9A-204	ENST00000422324	AFAP1	Q8N556	730 aa		42.8	■■■■■ 4.44
PPP1R9A-204	ENST00000422324	BCORL1	Q5H9F3	1711 aa		42.79	■■■■■ 4.44
PPP1R9A-204	ENST00000422324	ADAMTSL3	P82987	1691 aa		42.79	■■■■■ 4.44
PPP1R9A-204	ENST00000422324	TRAPPC8	Q9Y2L5	1435 aa		42.77	■■■■■ 4.44
PPP1R9A-204	ENST00000422324	HECW2	Q9P2P5	1572 aa		42.77	■■■■■ 4.44
PPP1R9A-204	ENST00000422324	ARID4B	Q4LE39	1312 aa	Predicted RBP	42.75	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	SIGLEC1	Q9BZZ2	1709 aa		42.74	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	CFDP1	Q9UEE9	299 aa	Predicted RBP	42.73	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	ZNF777	Q9ULD5	760 aa	Predicted RBP	42.73	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	SUPT6H	Q7KZ85	1726 aa	Known RBP	42.73	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	MAP3K1	Q13233	1512 aa		42.72	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	SYCP2	Q9BX26	1530 aa		42.71	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	ATP10A	O60312	1499 aa		42.71	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	MLH3	Q9UHC1	1453 aa		42.71	■■■■■ 4.43
PPP1R9A-204	ENST00000422324	NCOA2	Q15596	1464 aa		42.69	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	C9orf84	Q5VXU9	1444 aa		42.69	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	LRRC9	Q6ZRR7	1453 aa		42.68	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	PLEKHH2	Q8IVE3	1493 aa		42.68	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	KIAA1107	Q9UPP5	1409 aa		42.67	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	DIP2C	Q9Y2E4	1556 aa		42.65	■■■■■ 4.42
PPP1R9A-204	ENST00000422324	MADD	Q8WXG6	1647 aa		42.63	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	ABCA6	Q8N139	1617 aa		42.62	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	RERE	Q9P2R6	1566 aa		42.58	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	MYT1L	Q9UL68	1186 aa		42.58	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	KIDINS220	Q9ULH0	1771 aa		42.57	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	PTPRM	P28827	1452 aa		42.57	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	HNRNPM	P52272	730 aa	Known RBP eCLIP	42.57	■■■■■ 4.41
PPP1R9A-204	ENST00000422324	KANK4	Q5T7N3	995 aa	Predicted RBP	42.52	■■■■■ 4.4
PPP1R9A-204	ENST00000422324	ZNF644	Q9H582	1327 aa	Predicted RBP	42.51	■■■■■ 4.4
PPP1R9A-204	ENST00000422324	RIMS1	Q86UR5	1692 aa	Known RBP	42.48	■■■■■ 4.39
PPP1R9A-204	ENST00000422324	MBD5	Q9P267	1494 aa		42.47	■■■■■ 4.39
PPP1R9A-204	ENST00000422324	SPAG9	O60271	1321 aa	Known RBP	42.46	■■■■■ 4.39
PPP1R9A-204	ENST00000422324	INO80	Q9ULG1	1556 aa	Predicted RBP	42.46	■■■■■ 4.39
PPP1R9A-204	ENST00000422324	ATP7A	Q04656	1500 aa		42.44	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	CAMSAP2	Q08AD1	1489 aa		42.43	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	MLEC	Q14165	292 aa		42.43	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	AGL	P35573	1532 aa		42.41	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	FER1L4	A9Z1Z3	1794 aa		42.4	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	APLP2	Q06481	763 aa		42.39	■■■■■ 4.38
PPP1R9A-204	ENST00000422324	CCDC141	Q6ZP82	1450 aa		42.31	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	MYOM3	Q5VTT5	1437 aa		42.31	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	PLXNC1	O60486	1568 aa		42.27	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	ARHGEF5	Q12774	1597 aa		42.27	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	RTEL1-TNFRSF6B	F6WH68	1400 aa		42.27	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	MIA2	Q96PC5	1412 aa		42.27	■■■■■ 4.36
PPP1R9A-204	ENST00000422324	RSPH4A	Q5TD94	716 aa		42.24	■■■■■ 4.35
PPP1R9A-204	ENST00000422324	A2M	P01023	1474 aa		42.23	■■■■■ 4.35
PPP1R9A-204	ENST00000422324	ADGB	Q8N7X0	1667 aa		42.22	■■■■■ 4.35
PPP1R9A-204	ENST00000422324	PLPPR3	Q6T4P5	718 aa		42.11	■■■■■ 4.33
PPP1R9A-204	ENST00000422324	LMTK3	Q96Q04	1460 aa		42.07	■■■■■ 4.33
PPP1R9A-204	ENST00000422324	MAST1	Q9Y2H9	1570 aa		42.06	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	PTPN23	Q9H3S7	1636 aa		42.06	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	TSPY4	P0CV99	314 aa		42.05	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	TSPY10	P0CW01	314 aa		42.05	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	CNTLN	Q9NXG0	1405 aa		42.04	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	DHX29	Q7Z478	1369 aa	Known RBP	42.04	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	CEBPA	P49715	358 aa	Predicted RBP	42.02	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	ESF1	Q9H501	851 aa	Known RBP	42.02	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	FGD6	Q6ZV73	1430 aa		42.02	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	C3	P01024	1663 aa		42.01	■■■■■ 4.32
PPP1R9A-204	ENST00000422324	TCOF1	Q13428	1488 aa	Known RBP	41.98	■■■■■ 4.31
PPP1R9A-204	ENST00000422324	MROH2A	A6NES4	1674 aa		41.96	■■■■■ 4.31
PPP1R9A-204	ENST00000422324	PREX1	Q8TCU6	1659 aa		41.92	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	CROCC2	H7BZ55	1655 aa		41.91	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	GGT6	Q6P531	493 aa		41.91	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	CLTC	Q00610	1675 aa	Known RBP	41.9	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	SHANK2	Q9UPX8	1470 aa		41.89	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	ABCC5	O15440	1437 aa		41.88	■■■■■ 4.3
PPP1R9A-204	ENST00000422324	DNMT1	P26358	1616 aa	Known RBP	41.87	■■■■■ 4.29
PPP1R9A-204	ENST00000422324	PPP6R1	Q9UPN7	881 aa		41.87	■■■■■ 4.29
PPP1R9A-204	ENST00000422324	KIF3B	O15066	747 aa		41.84	■■■■■ 4.29
PPP1R9A-204	ENST00000422324	DAPK1	P53355	1430 aa		41.84	■■■■■ 4.29
PPP1R9A-204	ENST00000422324	ZMYM3	Q14202	1370 aa		41.83	■■■■■ 4.29
PPP1R9A-204	ENST00000422324	FAM135A	Q9P2D6	1515 aa		41.78	■■■■■ 4.28
PPP1R9A-204	ENST00000422324	UHRF1BP1	Q6BDS2	1440 aa		41.78	■■■■■ 4.28
PPP1R9A-204	ENST00000422324	HSPA2	P54652	639 aa		41.77	■■■■■ 4.28
PPP1R9A-204	ENST00000422324	EIF2AK4	Q9P2K8	1649 aa	Known RBP	41.77	■■■■■ 4.28
PPP1R9A-204	ENST00000422324	SETD1B	Q9UPS6	1966 aa	Known RBP	41.76	■■■■■ 4.28
PPP1R9A-204	ENST00000422324	NPAT	Q14207	1427 aa		41.76	■■■■■ 4.28

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms