RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TCOF1Q13428 1488 aaKnown RBP25.86■■□□□ 1.73
CCDC28B-202ENST00000421922 ITGAEP38570 1179 aa25.84■■□□□ 1.73
CCDC28B-202ENST00000421922 ABCA9Q8IUA7 1624 aa25.83■■□□□ 1.73
CCDC28B-202ENST00000421922 CDC42BPBQ9Y5S2 1711 aa25.82■■□□□ 1.72
CCDC28B-202ENST00000421922 ARHGAP5Q13017 1502 aa25.82■■□□□ 1.72
CCDC28B-202ENST00000421922 CAMSAP2Q08AD1 1489 aa25.81■■□□□ 1.72
CCDC28B-202ENST00000421922 ZNF777Q9ULD5 760 aaPredicted RBP25.8■■□□□ 1.72
CCDC28B-202ENST00000421922 PLCH2O75038 1416 aa25.75■■□□□ 1.71
CCDC28B-202ENST00000421922 ARAP3Q8WWN8 1544 aa25.74■■□□□ 1.71
CCDC28B-202ENST00000421922 DNMT1P26358 1616 aaKnown RBP25.72■■□□□ 1.71
CCDC28B-202ENST00000421922 SAMD9LQ8IVG5 1584 aa25.71■■□□□ 1.71
CCDC28B-202ENST00000421922 PLEKHH2Q8IVE3 1493 aa25.7■■□□□ 1.7
CCDC28B-202ENST00000421922 ZNF644Q9H582 1327 aaPredicted RBP25.7■■□□□ 1.7
CCDC28B-202ENST00000421922 EFCAB2Q5VUJ9 269 aa25.7■■□□□ 1.7
CCDC28B-202ENST00000421922 CFAP74Q9C0B2 1584 aa25.68■■□□□ 1.7
CCDC28B-202ENST00000421922 DAPK1P53355 1430 aa25.67■■□□□ 1.7
CCDC28B-202ENST00000421922 CROCC2H7BZ55 1655 aa25.66■■□□□ 1.7
CCDC28B-202ENST00000421922 GLI2P10070 1586 aa25.66■■□□□ 1.7
CCDC28B-202ENST00000421922 CD109Q6YHK3 1445 aa25.66■■□□□ 1.7
CCDC28B-202ENST00000421922 DIP2BQ9P265 1576 aa25.66■■□□□ 1.7
CCDC28B-202ENST00000421922 FANCAO15360 1455 aa25.64■■□□□ 1.69
CCDC28B-202ENST00000421922 ARHGEF5Q12774 1597 aa25.63■■□□□ 1.69
CCDC28B-202ENST00000421922 SYCP2Q9BX26 1530 aa25.63■■□□□ 1.69
CCDC28B-202ENST00000421922 FAM69CQ0P6D2 419 aa25.62■■□□□ 1.69
CCDC28B-202ENST00000421922 ADGBQ8N7X0 1667 aa25.62■■□□□ 1.69
CCDC28B-202ENST00000421922 MAP3K4Q9Y6R4 1608 aa25.61■■□□□ 1.69
CCDC28B-202ENST00000421922 ABCC5O15440 1437 aa25.6■■□□□ 1.69
CCDC28B-202ENST00000421922 ABCC1P33527 1531 aa25.6■■□□□ 1.69
CCDC28B-202ENST00000421922 CCDC141Q6ZP82 1450 aa25.59■■□□□ 1.69
CCDC28B-202ENST00000421922 KIAA1107Q9UPP5 1409 aa25.59■■□□□ 1.69
CCDC28B-202ENST00000421922 PTPRKQ15262 1439 aa25.58■■□□□ 1.69
CCDC28B-202ENST00000421922 RSPH4AQ5TD94 716 aa25.57■■□□□ 1.68
CCDC28B-202ENST00000421922 SHANK2Q9UPX8 1470 aa25.57■■□□□ 1.68
CCDC28B-202ENST00000421922 HNRNPMP52272 730 aaKnown RBP eCLIP25.56■■□□□ 1.68
CCDC28B-202ENST00000421922 CHIC2Q9UKJ5 165 aa25.56■■□□□ 1.68
CCDC28B-202ENST00000421922 SETD5Q9C0A6 1442 aa25.55■■□□□ 1.68
CCDC28B-202ENST00000421922 TSPY4P0CV99 314 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 TSPY10P0CW01 314 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 GCC2Q8IWJ2 1684 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 ADGRL1O94910 1474 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 MBD5Q9P267 1494 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 AKNAQ7Z591 1439 aa25.54■■□□□ 1.68
CCDC28B-202ENST00000421922 ROCK1Q13464 1354 aa25.52■■□□□ 1.68
CCDC28B-202ENST00000421922 HFM1A2PYH4 1435 aa25.51■■□□□ 1.67
CCDC28B-202ENST00000421922 C9orf84Q5VXU9 1444 aa25.51■■□□□ 1.67
CCDC28B-202ENST00000421922 TSPOAP1O95153 1857 aa25.51■■□□□ 1.67
CCDC28B-202ENST00000421922 KDM4FA0A1W2PPD8 638 aa25.5■■□□□ 1.67
CCDC28B-202ENST00000421922 NEO1Q92859 1461 aa25.5■■□□□ 1.67
CCDC28B-202ENST00000421922 ANKRD30AQ9BXX3 1397 aa25.49■■□□□ 1.67
CCDC28B-202ENST00000421922 RAB3GAP2Q9H2M9 1393 aa25.48■■□□□ 1.67
CCDC28B-202ENST00000421922 ADGRL2O95490 1459 aa25.48■■□□□ 1.67
CCDC28B-202ENST00000421922 TEX14Q8IWB6 1497 aa25.48■■□□□ 1.67
CCDC28B-202ENST00000421922 RRP7BPQ9NSQ0 103 aa25.47■■□□□ 1.67
CCDC28B-202ENST00000421922 ARHGEF12Q9NZN5 1544 aa25.47■■□□□ 1.67
CCDC28B-202ENST00000421922 MAST1Q9Y2H9 1570 aa25.47■■□□□ 1.67
CCDC28B-202ENST00000421922 KDM6BO15054 1643 aa25.46■■□□□ 1.67
CCDC28B-202ENST00000421922 NAIPQ13075 1403 aa25.46■■□□□ 1.67
CCDC28B-202ENST00000421922 SCAPERQ9BY12 1400 aa25.46■■□□□ 1.67
CCDC28B-202ENST00000421922 TRAPPC8Q9Y2L5 1435 aa25.42■■□□□ 1.66
CCDC28B-202ENST00000421922 CCER1Q8TC90 406 aaPredicted RBP25.41■■□□□ 1.66
CCDC28B-202ENST00000421922 NCOA1Q15788 1441 aa25.41■■□□□ 1.66
CCDC28B-202ENST00000421922 PPRC1Q5VV67 1664 aaKnown RBP25.4■■□□□ 1.66
CCDC28B-202ENST00000421922 ZNF518AQ6AHZ1 1483 aa25.39■■□□□ 1.66
CCDC28B-202ENST00000421922 PLXNC1O60486 1568 aa25.39■■□□□ 1.65
CCDC28B-202ENST00000421922 SPAG9O60271 1321 aaKnown RBP25.38■■□□□ 1.65
CCDC28B-202ENST00000421922 MYT1LQ9UL68 1186 aa25.37■■□□□ 1.65
CCDC28B-202ENST00000421922 HRCP23327 699 aa25.37■■□□□ 1.65
CCDC28B-202ENST00000421922 POGZQ7Z3K3 1410 aa25.36■■□□□ 1.65
CCDC28B-202ENST00000421922 KIF15Q9NS87 1388 aa25.35■■□□□ 1.65
CCDC28B-202ENST00000421922 DENND4BO75064 1496 aaPredicted RBP25.35■■□□□ 1.65
CCDC28B-202ENST00000421922 AFAP1Q8N556 730 aa25.34■■□□□ 1.65
CCDC28B-202ENST00000421922 ACIN1Q9UKV3 1341 aaKnown RBP25.34■■□□□ 1.65
CCDC28B-202ENST00000421922 ATP7AQ04656 1500 aa25.34■■□□□ 1.65
CCDC28B-202ENST00000421922 ZFYVE16Q7Z3T8 1539 aa25.34■■□□□ 1.65
CCDC28B-202ENST00000421922 INO80Q9ULG1 1556 aaPredicted RBP25.34■■□□□ 1.65
CCDC28B-202ENST00000421922 RTEL1-TNFRSF6BF6WH68 1400 aa25.33■■□□□ 1.65
CCDC28B-202ENST00000421922 KDM5CP41229 1560 aa25.3■■□□□ 1.64
CCDC28B-202ENST00000421922 ANKRD50Q9ULJ7 1429 aa25.3■■□□□ 1.64
CCDC28B-202ENST00000421922 HECW2Q9P2P5 1572 aa25.29■■□□□ 1.64
CCDC28B-202ENST00000421922 RICTORQ6R327 1708 aa25.29■■□□□ 1.64
CCDC28B-202ENST00000421922 DUOX2Q9NRD8 1548 aa25.28■■□□□ 1.64
CCDC28B-202ENST00000421922 ILDR1Q86SU0 546 aaPredicted RBP25.26■■□□□ 1.63
CCDC28B-202ENST00000421922 TRIM52Q96A61 297 aa25.25■■□□□ 1.63
CCDC28B-202ENST00000421922 DHX57Q6P158 1386 aaKnown RBP25.25■■□□□ 1.63
CCDC28B-202ENST00000421922 KIDINS220Q9ULH0 1771 aa25.24■■□□□ 1.63
CCDC28B-202ENST00000421922 MLH3Q9UHC1 1453 aa25.22■■□□□ 1.63
CCDC28B-202ENST00000421922 ERBINQ96RT1 1412 aa25.22■■□□□ 1.63
CCDC28B-202ENST00000421922 RAPGEF3O95398 923 aa25.2■■□□□ 1.63
CCDC28B-202ENST00000421922 FRMPD1Q5SYB0 1578 aa25.19■■□□□ 1.62
CCDC28B-202ENST00000421922 ZEB1P37275 1124 aaPredicted RBP25.18■■□□□ 1.62
CCDC28B-202ENST00000421922 ZMYM4Q5VZL5 1548 aa25.17■■□□□ 1.62
CCDC28B-202ENST00000421922 CLSPNQ9HAW4 1339 aa25.15■■□□□ 1.62
CCDC28B-202ENST00000421922 ABCA6Q8N139 1617 aa25.15■■□□□ 1.62
CCDC28B-202ENST00000421922 EIF2AK4Q9P2K8 1649 aaKnown RBP25.13■■□□□ 1.61
CCDC28B-202ENST00000421922 UNC13BO14795 1591 aa25.12■■□□□ 1.61
CCDC28B-202ENST00000421922 A2MP01023 1474 aa25.11■■□□□ 1.61
CCDC28B-202ENST00000421922 MAGI2Q86UL8 1455 aa25.11■■□□□ 1.61
CCDC28B-202ENST00000421922 DIP2CQ9Y2E4 1556 aa25.1■■□□□ 1.61
CCDC28B-202ENST00000421922 DHX29Q7Z478 1369 aaKnown RBP25.1■■□□□ 1.61
CCDC28B-202ENST00000421922 COL17A1Q9UMD9 1497 aaPredicted RBP25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms