RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 RIMS1Q86UR5 1692 aaKnown RBP34.58■■■■□ 3.13
PTPN4-202ENST00000420482 EFCAB2Q5VUJ9 269 aa34.58■■■■□ 3.13
PTPN4-202ENST00000420482 ARID4BQ4LE39 1312 aaPredicted RBP34.57■■■■□ 3.13
PTPN4-202ENST00000420482 PCF11O94913 1555 aaKnown RBP34.56■■■■□ 3.12
PTPN4-202ENST00000420482 ZFYVE16Q7Z3T8 1539 aa34.55■■■■□ 3.12
PTPN4-202ENST00000420482 LRRIQ1Q96JM4 1722 aa34.53■■■■□ 3.12
PTPN4-202ENST00000420482 SIGLEC1Q9BZZ2 1709 aa34.53■■■■□ 3.12
PTPN4-202ENST00000420482 SCAPERQ9BY12 1400 aa34.53■■■■□ 3.12
PTPN4-202ENST00000420482 MAGI2Q86UL8 1455 aa34.52■■■■□ 3.12
PTPN4-202ENST00000420482 FYCO1Q9BQS8 1478 aa34.51■■■■□ 3.11
PTPN4-202ENST00000420482 POGZQ7Z3K3 1410 aa34.47■■■■□ 3.11
PTPN4-202ENST00000420482 ARHGAP5Q13017 1502 aa34.47■■■■□ 3.11
PTPN4-202ENST00000420482 YEATS2Q9ULM3 1422 aa34.47■■■■□ 3.11
PTPN4-202ENST00000420482 LMTK3Q96Q04 1460 aa34.44■■■■□ 3.1
PTPN4-202ENST00000420482 FER1L4A9Z1Z3 1794 aa34.41■■■■□ 3.1
PTPN4-202ENST00000420482 ZNF518AQ6AHZ1 1483 aa34.38■■■■□ 3.09
PTPN4-202ENST00000420482 PREX2Q70Z35 1606 aa34.32■■■■□ 3.08
PTPN4-202ENST00000420482 CDC42BPBQ9Y5S2 1711 aa34.31■■■■□ 3.08
PTPN4-202ENST00000420482 ATP10AO60312 1499 aa34.29■■■■□ 3.08
PTPN4-202ENST00000420482 KDM5CP41229 1560 aa34.28■■■■□ 3.08
PTPN4-202ENST00000420482 MYT1LQ9UL68 1186 aa34.28■■■■□ 3.08
PTPN4-202ENST00000420482 ARHGEF12Q9NZN5 1544 aa34.27■■■■□ 3.08
PTPN4-202ENST00000420482 C9orf84Q5VXU9 1444 aa34.27■■■■□ 3.08
PTPN4-202ENST00000420482 AFAP1Q8N556 730 aa34.24■■■■□ 3.07
PTPN4-202ENST00000420482 CDC42BPAQ5VT25 1732 aa34.21■■■■□ 3.07
PTPN4-202ENST00000420482 CEP162Q5TB80 1403 aa34.21■■■■□ 3.07
PTPN4-202ENST00000420482 ABCC1P33527 1531 aa34.2■■■■□ 3.07
PTPN4-202ENST00000420482 FBXO41Q8TF61 875 aa34.2■■■■□ 3.07
PTPN4-202ENST00000420482 MLECQ14165 292 aa34.19■■■■□ 3.06
PTPN4-202ENST00000420482 MTUS2Q5JR59 1369 aa34.18■■■■□ 3.06
PTPN4-202ENST00000420482 DIP2CQ9Y2E4 1556 aa34.16■■■■□ 3.06
PTPN4-202ENST00000420482 REREQ9P2R6 1566 aa34.15■■■■□ 3.06
PTPN4-202ENST00000420482 MLH3Q9UHC1 1453 aa34.15■■■■□ 3.06
PTPN4-202ENST00000420482 PREX1Q8TCU6 1659 aa34.15■■■■□ 3.06
PTPN4-202ENST00000420482 ITSN2Q9NZM3 1697 aa34.15■■■■□ 3.06
PTPN4-202ENST00000420482 ABCA6Q8N139 1617 aa34.12■■■■□ 3.05
PTPN4-202ENST00000420482 PLPPR3Q6T4P5 718 aa34.12■■■■□ 3.05
PTPN4-202ENST00000420482 ZNF777Q9ULD5 760 aaPredicted RBP34.12■■■■□ 3.05
PTPN4-202ENST00000420482 CCNB3Q8WWL7 1395 aa34.11■■■■□ 3.05
PTPN4-202ENST00000420482 GPATCH8Q9UKJ3 1502 aaKnown RBP34.1■■■■□ 3.05
PTPN4-202ENST00000420482 HSPA2P54652 639 aa34.1■■■■□ 3.05
PTPN4-202ENST00000420482 TRAPPC8Q9Y2L5 1435 aa34.1■■■■□ 3.05
PTPN4-202ENST00000420482 CFDP1Q9UEE9 299 aaPredicted RBP34.07■■■■□ 3.04
PTPN4-202ENST00000420482 PLEKHH2Q8IVE3 1493 aa34.06■■■■□ 3.04
PTPN4-202ENST00000420482 EHBP1L1Q8N3D4 1523 aa34.04■■■■□ 3.04
PTPN4-202ENST00000420482 SAMD9LQ8IVG5 1584 aa34.03■■■■□ 3.04
PTPN4-202ENST00000420482 SETD1BQ9UPS6 1966 aaKnown RBP34.01■■■■□ 3.03
PTPN4-202ENST00000420482 KIDINS220Q9ULH0 1771 aa34■■■■□ 3.03
PTPN4-202ENST00000420482 SYCP2Q9BX26 1530 aa34■■■■□ 3.03
PTPN4-202ENST00000420482 KIAA1107Q9UPP5 1409 aa34■■■■□ 3.03
PTPN4-202ENST00000420482 AGLP35573 1532 aa33.99■■■■□ 3.03
PTPN4-202ENST00000420482 SPAG9O60271 1321 aaKnown RBP33.97■■■■□ 3.03
PTPN4-202ENST00000420482 C3P01024 1663 aa33.96■■■■□ 3.03
PTPN4-202ENST00000420482 ESF1Q9H501 851 aaKnown RBP33.96■■■■□ 3.03
PTPN4-202ENST00000420482 HNRNPMP52272 730 aaKnown RBP eCLIP33.95■■■■□ 3.031e-9■■■■■ 28.9
PTPN4-202ENST00000420482 CEBPAP49715 358 aaPredicted RBP33.92■■■■□ 3.02
PTPN4-202ENST00000420482 LOC105371045A0A1W2PR82 267 aa33.91■■■■□ 3.02
PTPN4-202ENST00000420482 STRCQ7RTU9 1775 aa33.9■■■■□ 3.02
PTPN4-202ENST00000420482 TIAM1Q13009 1591 aa33.9■■■■□ 3.02
PTPN4-202ENST00000420482 UHRF1BP1Q6BDS2 1440 aa33.87■■■■□ 3.01
PTPN4-202ENST00000420482 ATP7AQ04656 1500 aa33.86■■■■□ 3.01
PTPN4-202ENST00000420482 SUPT6HQ7KZ85 1726 aaKnown RBP33.86■■■■□ 3.01
PTPN4-202ENST00000420482 VPS8Q8N3P4 1428 aa33.86■■■■□ 3.01
PTPN4-202ENST00000420482 INO80Q9ULG1 1556 aaPredicted RBP33.81■■■■□ 3
PTPN4-202ENST00000420482 MROH2AA6NES4 1674 aa33.8■■■■□ 3
PTPN4-202ENST00000420482 CNTLNQ9NXG0 1405 aa33.8■■■■□ 3
PTPN4-202ENST00000420482 NCOA2Q15596 1464 aa33.8■■■■□ 3
PTPN4-202ENST00000420482 CERKQ8TCT0 537 aa33.77■■■■□ 3
PTPN4-202ENST00000420482 ZNF644Q9H582 1327 aaPredicted RBP33.77■■■■□ 3
PTPN4-202ENST00000420482 A2MP01023 1474 aa33.76■■■□□ 2.99
PTPN4-202ENST00000420482 MBD5Q9P267 1494 aa33.72■■■□□ 2.99
PTPN4-202ENST00000420482 RSPH4AQ5TD94 716 aa33.72■■■□□ 2.99
PTPN4-202ENST00000420482 PLXNC1O60486 1568 aa33.72■■■□□ 2.99
PTPN4-202ENST00000420482 ADGBQ8N7X0 1667 aa33.71■■■□□ 2.99
PTPN4-202ENST00000420482 RTEL1-TNFRSF6BF6WH68 1400 aa33.7■■■□□ 2.99
PTPN4-202ENST00000420482 LRRC9Q6ZRR7 1453 aa33.7■■■□□ 2.99
PTPN4-202ENST00000420482 DMRT2Q9Y5R5 561 aa33.7■■■□□ 2.99
PTPN4-202ENST00000420482 MAP3K1Q13233 1512 aa33.69■■■□□ 2.98
PTPN4-202ENST00000420482 CAMSAP2Q08AD1 1489 aa33.67■■■□□ 2.98
PTPN4-202ENST00000420482 CCDC141Q6ZP82 1450 aa33.66■■■□□ 2.98
PTPN4-202ENST00000420482 PTPRTO14522 1441 aa33.64■■■□□ 2.98
PTPN4-202ENST00000420482 CLTCQ00610 1675 aaKnown RBP33.64■■■□□ 2.98
PTPN4-202ENST00000420482 NPATQ14207 1427 aa33.62■■■□□ 2.97
PTPN4-202ENST00000420482 PPP6R1Q9UPN7 881 aa33.62■■■□□ 2.97
PTPN4-202ENST00000420482 GGT6Q6P531 493 aa33.61■■■□□ 2.97
PTPN4-202ENST00000420482 APLP2Q06481 763 aa33.6■■■□□ 2.97
PTPN4-202ENST00000420482 ZMYM3Q14202 1370 aa33.59■■■□□ 2.97
PTPN4-202ENST00000420482 TSPY4P0CV99 314 aa33.58■■■□□ 2.97
PTPN4-202ENST00000420482 TSPY10P0CW01 314 aa33.58■■■□□ 2.97
PTPN4-202ENST00000420482 NCOA1Q15788 1441 aa33.57■■■□□ 2.96
PTPN4-202ENST00000420482 DHX29Q7Z478 1369 aaKnown RBP33.57■■■□□ 2.96
PTPN4-202ENST00000420482 ZNF142P52746 1687 aaPredicted RBP33.56■■■□□ 2.96
PTPN4-202ENST00000420482 ARHGEF5Q12774 1597 aa33.55■■■□□ 2.96
PTPN4-202ENST00000420482 MYO3AQ8NEV4 1616 aa33.53■■■□□ 2.96
PTPN4-202ENST00000420482 CAMSAP1Q5T5Y3 1602 aa33.52■■■□□ 2.96
PTPN4-202ENST00000420482 KANK4Q5T7N3 995 aaPredicted RBP33.51■■■□□ 2.95
PTPN4-202ENST00000420482 MIA2Q96PC5 1412 aa33.49■■■□□ 2.95
PTPN4-202ENST00000420482 LTBP4Q8N2S1 1624 aa33.49■■■□□ 2.95
PTPN4-202ENST00000420482 MYOM3Q5VTT5 1437 aa33.48■■■□□ 2.95
PTPN4-202ENST00000420482 KIF3BO15066 747 aa33.45■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms