RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 RAD21O60216 631 aa8.47□□□□□ -1.05
VPS13A-207ENST00000419472 MFSD10Q14728 455 aa8.47□□□□□ -1.05
VPS13A-207ENST00000419472 AEBP1Q8IUX7 1158 aa8.47□□□□□ -1.05
VPS13A-207ENST00000419472 ARIH1Q9Y4X5 557 aaPredicted RBP8.47□□□□□ -1.05
VPS13A-207ENST00000419472 DDX27Q96GQ7 796 aaKnown RBP8.46□□□□□ -1.05
VPS13A-207ENST00000419472 SPDYE1Q8NFV5 336 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-207ENST00000419472 ZNF428Q96B54 188 aa8.45□□□□□ -1.06
VPS13A-207ENST00000419472 GPR37O15354 613 aa8.45□□□□□ -1.06
VPS13A-207ENST00000419472 CRISPLD2Q9H0B8 497 aa8.44□□□□□ -1.06
VPS13A-207ENST00000419472 ZNF777Q9ULD5 760 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-207ENST00000419472 PARP9Q8IXQ6 854 aa8.44□□□□□ -1.06
VPS13A-207ENST00000419472 CAMK2BQ13554 666 aa8.44□□□□□ -1.06
VPS13A-207ENST00000419472 CABP2Q9NPB3 220 aa8.44□□□□□ -1.06
VPS13A-207ENST00000419472 IGSF3O75054 1194 aa8.43□□□□□ -1.06
VPS13A-207ENST00000419472 PDE4AP27815 886 aa8.43□□□□□ -1.06
VPS13A-207ENST00000419472 DDRGK1Q96HY6 314 aa8.43□□□□□ -1.06
VPS13A-207ENST00000419472 A6NJR5 290 aa8.43□□□□□ -1.06
VPS13A-207ENST00000419472 NLRP6P59044 892 aa8.43□□□□□ -1.06
VPS13A-207ENST00000419472 MTMR7Q9Y216 660 aa8.42□□□□□ -1.06
VPS13A-207ENST00000419472 RGS22Q8NE09 1264 aa8.41□□□□□ -1.06
VPS13A-207ENST00000419472 CCDC102AQ96A19 550 aa8.41□□□□□ -1.06
VPS13A-207ENST00000419472 FOXD4L5Q5VV16 416 aaPredicted RBP8.4□□□□□ -1.06
VPS13A-207ENST00000419472 FOXD4L4Q8WXT5 416 aaPredicted RBP8.4□□□□□ -1.06
VPS13A-207ENST00000419472 TRAIPQ9BWF2 469 aa8.39□□□□□ -1.07
VPS13A-207ENST00000419472 POM121Q96HA1 1249 aa8.39□□□□□ -1.07
VPS13A-207ENST00000419472 MS4A4AQ96JQ5 239 aa8.39□□□□□ -1.07
VPS13A-207ENST00000419472 MCM6Q14566 821 aa8.39□□□□□ -1.07
VPS13A-207ENST00000419472 DPYSL4O14531 572 aa8.38□□□□□ -1.07
VPS13A-207ENST00000419472 RETREG2Q8NC44 543 aa8.36□□□□□ -1.07
VPS13A-207ENST00000419472 SOX12O15370 315 aa8.35□□□□□ -1.07
VPS13A-207ENST00000419472 AMHR2Q16671 573 aa8.35□□□□□ -1.07
VPS13A-207ENST00000419472 FECHP22830 423 aa8.34□□□□□ -1.07
VPS13A-207ENST00000419472 IFNL1Q8IU54 200 aa8.34□□□□□ -1.07
VPS13A-207ENST00000419472 IRF5Q13568 498 aa8.34□□□□□ -1.07
VPS13A-207ENST00000419472 PROSER2Q86WR7 435 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-207ENST00000419472 GZF1Q9H116 711 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-207ENST00000419472 EMILIN3Q9NT22 766 aa8.34□□□□□ -1.07
VPS13A-207ENST00000419472 IRF6O14896 467 aa8.33□□□□□ -1.08
VPS13A-207ENST00000419472 ZNF579Q8NAF0 562 aaKnown RBP8.33□□□□□ -1.08
VPS13A-207ENST00000419472 RBM25P49756 843 aaKnown RBP8.33□□□□□ -1.08
VPS13A-207ENST00000419472 TMCO4Q5TGY1 634 aa8.33□□□□□ -1.08
VPS13A-207ENST00000419472 MINK1Q8N4C8 1332 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-207ENST00000419472 MS4A1P11836 297 aa8.33□□□□□ -1.08
VPS13A-207ENST00000419472 MFAP1P55081 439 aaKnown RBP8.33□□□□□ -1.08
VPS13A-207ENST00000419472 MAP2K5Q13163 448 aa8.33□□□□□ -1.08
VPS13A-207ENST00000419472 FNBP4Q8N3X1 1017 aaPredicted RBP8.33□□□□□ -1.08
VPS13A-207ENST00000419472 CCDC61Q9Y6R9 512 aa8.33□□□□□ -1.08
VPS13A-207ENST00000419472 TTLL12Q14166 644 aaPredicted RBP8.32□□□□□ -1.08
VPS13A-207ENST00000419472 GOPCQ9HD26 462 aa8.32□□□□□ -1.08
VPS13A-207ENST00000419472 CHADLQ6NUI6 762 aa8.31□□□□□ -1.08
VPS13A-207ENST00000419472 CCDC97Q96F63 343 aaPredicted RBP8.31□□□□□ -1.08
VPS13A-207ENST00000419472 REPIN1Q9BWE0 567 aaKnown RBP8.3□□□□□ -1.08
VPS13A-207ENST00000419472 NUTM2FA1L443 756 aa8.29□□□□□ -1.08
VPS13A-207ENST00000419472 PDIA6Q15084 440 aa8.29□□□□□ -1.08
VPS13A-207ENST00000419472 PPP1R15BQ5SWA1 713 aa8.29□□□□□ -1.08
VPS13A-207ENST00000419472 PCMTD1Q96MG8 357 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-207ENST00000419472 SERPINA10Q9UK55 444 aa8.28□□□□□ -1.08
VPS13A-207ENST00000419472 GIGYF2Q6Y7W6 1299 aaKnown RBP8.27□□□□□ -1.08
VPS13A-207ENST00000419472 REM2Q8IYK8 340 aaPredicted RBP8.27□□□□□ -1.08
VPS13A-207ENST00000419472 GRXCR2A6NFK2 248 aa8.26□□□□□ -1.09
VPS13A-207ENST00000419472 AKT1S1Q96B36 256 aa8.25□□□□□ -1.09
VPS13A-207ENST00000419472 PLSCR2Q9NRY7 297 aa8.25□□□□□ -1.09
VPS13A-207ENST00000419472 MAP3K13O43283 966 aa8.24□□□□□ -1.09
VPS13A-207ENST00000419472 GNPATO15228 680 aa8.24□□□□□ -1.09
VPS13A-207ENST00000419472 OXER1Q8TDS5 423 aa8.23□□□□□ -1.09
VPS13A-207ENST00000419472 PROCA1Q8NCQ7 364 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-207ENST00000419472 FBXW7Q969H0 707 aa8.22□□□□□ -1.09
VPS13A-207ENST00000419472 DSG2Q14126 1118 aa8.22□□□□□ -1.09
VPS13A-207ENST00000419472 GPHNQ9NQX3 736 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-207ENST00000419472 SHROOM4Q9ULL8 1493 aa8.21□□□□□ -1.09
VPS13A-207ENST00000419472 PITPNM1O00562 1244 aa8.21□□□□□ -1.1
VPS13A-207ENST00000419472 COG6Q9Y2V7 657 aa8.21□□□□□ -1.1
VPS13A-207ENST00000419472 SPDYE16A6NNV3 312 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-207ENST00000419472 SH3D19Q5HYK7 790 aa8.19□□□□□ -1.1
VPS13A-207ENST00000419472 OSBPP22059 807 aa8.18□□□□□ -1.1
VPS13A-207ENST00000419472 FARP1Q9Y4F1 1045 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-207ENST00000419472 HIC1Q14526 733 aa8.17□□□□□ -1.1
VPS13A-207ENST00000419472 ATP1B4Q9UN42 357 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-207ENST00000419472 ZNF330Q9Y3S2 320 aaPredicted RBP8.17□□□□□ -1.1
VPS13A-207ENST00000419472 SNRKQ9NRH2 765 aa8.16□□□□□ -1.1
VPS13A-207ENST00000419472 POLR3EQ9NVU0 708 aa8.16□□□□□ -1.1
VPS13A-207ENST00000419472 PRIM1P49642 420 aaKnown RBP8.16□□□□□ -1.1
VPS13A-207ENST00000419472 KIF12Q96FN5 646 aa8.16□□□□□ -1.1
VPS13A-207ENST00000419472 CARNS1A5YM72 827 aa8.15□□□□□ -1.1
VPS13A-207ENST00000419472 FBXO31Q5XUX0 539 aaPredicted RBP8.15□□□□□ -1.1
VPS13A-207ENST00000419472 ABCC9O60706 1549 aa8.15□□□□□ -1.11
VPS13A-207ENST00000419472 FCHSD2O94868 740 aa8.13□□□□□ -1.11
VPS13A-207ENST00000419472 SKIV2LQ15477 1246 aaKnown RBP8.13□□□□□ -1.11
VPS13A-207ENST00000419472 E9PSI1 815 aa8.13□□□□□ -1.11
VPS13A-207ENST00000419472 DDX12PQ92771 950 aa8.13□□□□□ -1.11
VPS13A-207ENST00000419472 PHOX2BQ99453 314 aa8.13□□□□□ -1.11
VPS13A-207ENST00000419472 MDM2Q00987 491 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-207ENST00000419472 PTGDRQ13258 359 aa8.1□□□□□ -1.11
VPS13A-207ENST00000419472 SPDYE5A6NIY4 337 aa8.1□□□□□ -1.11
VPS13A-207ENST00000419472 POM121CA8CG34 1229 aa8.1□□□□□ -1.11
VPS13A-207ENST00000419472 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.1□□□□□ -1.11
VPS13A-207ENST00000419472 GDPD2Q9HCC8 539 aa8.1□□□□□ -1.11
VPS13A-207ENST00000419472 RBM42Q9BTD8 480 aaKnown RBP8.1□□□□□ -1.11
VPS13A-207ENST00000419472 BEGAINQ9BUH8 593 aa8.1□□□□□ -1.11
VPS13A-207ENST00000419472 TMUB1Q9BVT8 246 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 202.9 ms