RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 KCNH8Q96L42 1107 aa12.03□□□□□ -0.48
USP54-203ENST00000418501 TONSLQ96HA7 1378 aa12.03□□□□□ -0.48
USP54-203ENST00000418501 PELP1Q8IZL8 1130 aaKnown RBP12.02□□□□□ -0.49
USP54-203ENST00000418501 DAPK1P53355 1430 aa12.01□□□□□ -0.49
USP54-203ENST00000418501 MYT1LQ9UL68 1186 aa12.01□□□□□ -0.49
USP54-203ENST00000418501 ADCY10Q96PN6 1610 aa12.01□□□□□ -0.49
USP54-203ENST00000418501 GPATCH8Q9UKJ3 1502 aaKnown RBP12□□□□□ -0.49
USP54-203ENST00000418501 CAMSAP2Q08AD1 1489 aa11.99□□□□□ -0.49
USP54-203ENST00000418501 NEUROD1Q13562 356 aa11.99□□□□□ -0.49
USP54-203ENST00000418501 MAGI3Q5TCQ9 1506 aa11.99□□□□□ -0.49
USP54-203ENST00000418501 ARHGAP5Q13017 1502 aa11.97□□□□□ -0.49
USP54-203ENST00000418501 NAIPQ13075 1403 aa11.97□□□□□ -0.49
USP54-203ENST00000418501 SLC4A1APQ9BWU0 796 aaKnown RBP11.96□□□□□ -0.49
USP54-203ENST00000418501 SHANK2Q9UPX8 1470 aa11.96□□□□□ -0.5
USP54-203ENST00000418501 KDM5BQ9UGL1 1544 aa11.95□□□□□ -0.5
USP54-203ENST00000418501 ABCC5O15440 1437 aa11.95□□□□□ -0.5
USP54-203ENST00000418501 DNMT1P26358 1616 aaKnown RBP11.95□□□□□ -0.5
USP54-203ENST00000418501 CCDC141Q6ZP82 1450 aa11.94□□□□□ -0.5
USP54-203ENST00000418501 KIAA1107Q9UPP5 1409 aa11.94□□□□□ -0.5
USP54-203ENST00000418501 LRRIQ1Q96JM4 1722 aa11.93□□□□□ -0.5
USP54-203ENST00000418501 C9orf84Q5VXU9 1444 aa11.93□□□□□ -0.5
USP54-203ENST00000418501 ABCC10Q5T3U5 1492 aa11.93□□□□□ -0.5
USP54-203ENST00000418501 DIEXFQ68CQ4 756 aaKnown RBP11.93□□□□□ -0.5
USP54-203ENST00000418501 MPHOSPH9Q99550 1183 aa11.92□□□□□ -0.5
USP54-203ENST00000418501 PLCH2O75038 1416 aa11.91□□□□□ -0.5
USP54-203ENST00000418501 WDR7Q9Y4E6 1490 aa11.91□□□□□ -0.5
USP54-203ENST00000418501 ADGRL2O95490 1459 aa11.91□□□□□ -0.5
USP54-203ENST00000418501 ANKRD50Q9ULJ7 1429 aa11.91□□□□□ -0.5
USP54-203ENST00000418501 HNRNPMP52272 730 aaKnown RBP eCLIP11.9□□□□□ -0.5
USP54-203ENST00000418501 ZNF644Q9H582 1327 aaPredicted RBP11.9□□□□□ -0.5
USP54-203ENST00000418501 ARHGEF5Q12774 1597 aa11.9□□□□□ -0.51
USP54-203ENST00000418501 SPAG9O60271 1321 aaKnown RBP11.89□□□□□ -0.51
USP54-203ENST00000418501 KANK1Q14678 1352 aa11.89□□□□□ -0.51
USP54-203ENST00000418501 KIF15Q9NS87 1388 aa11.89□□□□□ -0.51
USP54-203ENST00000418501 NCOA1Q15788 1441 aa11.89□□□□□ -0.51
USP54-203ENST00000418501 GCC2Q8IWJ2 1684 aa11.88□□□□□ -0.51
USP54-203ENST00000418501 ARAP3Q8WWN8 1544 aa11.88□□□□□ -0.51
USP54-203ENST00000418501 PTPRKQ15262 1439 aa11.87□□□□□ -0.51
USP54-203ENST00000418501 NUP155O75694 1391 aa11.86□□□□□ -0.51
USP54-203ENST00000418501 ZCCHC11Q5TAX3 1644 aaKnown RBP11.86□□□□□ -0.51
USP54-203ENST00000418501 ADGBQ8N7X0 1667 aa11.86□□□□□ -0.51
USP54-203ENST00000418501 PREX2Q70Z35 1606 aa11.85□□□□□ -0.51
USP54-203ENST00000418501 ASXL2Q76L83 1435 aa11.84□□□□□ -0.51
USP54-203ENST00000418501 MYO5CQ9NQX4 1742 aa11.84□□□□□ -0.51
USP54-203ENST00000418501 CENPBP07199 599 aaPredicted RBP11.84□□□□□ -0.51
USP54-203ENST00000418501 ERCC6L2Q5T890 1561 aa11.84□□□□□ -0.51
USP54-203ENST00000418501 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.83□□□□□ -0.52
USP54-203ENST00000418501 PPP1R15AO75807 674 aaPredicted RBP11.83□□□□□ -0.52
USP54-203ENST00000418501 SIN3AQ96ST3 1273 aa11.83□□□□□ -0.52
USP54-203ENST00000418501 RTEL1-TNFRSF6BF6WH68 1400 aa11.82□□□□□ -0.52
USP54-203ENST00000418501 PKD2Q13563 968 aa11.81□□□□□ -0.52
USP54-203ENST00000418501 CFAP74Q9C0B2 1584 aa11.81□□□□□ -0.52
USP54-203ENST00000418501 CDC42BPAQ5VT25 1732 aa11.8□□□□□ -0.52
USP54-203ENST00000418501 FANCAO15360 1455 aa11.8□□□□□ -0.52
USP54-203ENST00000418501 DUOX2Q9NRD8 1548 aa11.8□□□□□ -0.52
USP54-203ENST00000418501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP54-203ENST00000418501 CD109Q6YHK3 1445 aa11.79□□□□□ -0.52
USP54-203ENST00000418501 ERBINQ96RT1 1412 aa11.79□□□□□ -0.52
USP54-203ENST00000418501 MAPKBP1O60336 1514 aa11.79□□□□□ -0.52
USP54-203ENST00000418501 CYB5RLQ6IPT4 315 aa11.79□□□□□ -0.52
USP54-203ENST00000418501 MAST1Q9Y2H9 1570 aa11.79□□□□□ -0.52
USP54-203ENST00000418501 SYCP2Q9BX26 1530 aa11.78□□□□□ -0.52
USP54-203ENST00000418501 ADGRL1O94910 1474 aa11.78□□□□□ -0.52
USP54-203ENST00000418501 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
USP54-203ENST00000418501 EIF4G2P78344 907 aaKnown RBP eCLIP11.77□□□□□ -0.52
USP54-203ENST00000418501 SCAPERQ9BY12 1400 aa11.77□□□□□ -0.52
USP54-203ENST00000418501 MBD5Q9P267 1494 aa11.77□□□□□ -0.52
USP54-203ENST00000418501 CROCC2H7BZ55 1655 aa11.77□□□□□ -0.53
USP54-203ENST00000418501 TTC37Q6PGP7 1564 aa11.76□□□□□ -0.53
USP54-203ENST00000418501 SAMD9LQ8IVG5 1584 aa11.76□□□□□ -0.53
USP54-203ENST00000418501 ZNF518AQ6AHZ1 1483 aa11.74□□□□□ -0.53
USP54-203ENST00000418501 NEO1Q92859 1461 aa11.74□□□□□ -0.53
USP54-203ENST00000418501 ANKRD30BQ9BXX2 1392 aa11.74□□□□□ -0.53
USP54-203ENST00000418501 ABCA9Q8IUA7 1624 aa11.73□□□□□ -0.53
USP54-203ENST00000418501 ABCC1P33527 1531 aa11.73□□□□□ -0.53
USP54-203ENST00000418501 CCDC144AA2RUR9 1427 aa11.73□□□□□ -0.53
USP54-203ENST00000418501 PLXNC1O60486 1568 aa11.73□□□□□ -0.53
USP54-203ENST00000418501 TEX14Q8IWB6 1497 aa11.72□□□□□ -0.53
USP54-203ENST00000418501 SLC24A1O60721 1099 aa11.71□□□□□ -0.53
USP54-203ENST00000418501 RPRD2Q5VT52 1461 aaKnown RBP11.71□□□□□ -0.54
USP54-203ENST00000418501 KDM5DQ9BY66 1539 aa11.71□□□□□ -0.54
USP54-203ENST00000418501 CDC42BPBQ9Y5S2 1711 aa11.71□□□□□ -0.54
USP54-203ENST00000418501 DENND4BO75064 1496 aaPredicted RBP11.71□□□□□ -0.54
USP54-203ENST00000418501 KIF3BO15066 747 aa11.7□□□□□ -0.54
USP54-203ENST00000418501 ANP32CO43423 234 aa11.7□□□□□ -0.54
USP54-203ENST00000418501 L3MBTL2Q969R5 705 aa11.7□□□□□ -0.54
USP54-203ENST00000418501 AFAP1Q8N556 730 aa11.7□□□□□ -0.54
USP54-203ENST00000418501 FAM69CQ0P6D2 419 aa11.7□□□□□ -0.54
USP54-203ENST00000418501 DHX29Q7Z478 1369 aaKnown RBP11.69□□□□□ -0.54
USP54-203ENST00000418501 ZNF326Q5BKZ1 582 aaKnown RBP11.69□□□□□ -0.54
USP54-203ENST00000418501 ESF1Q9H501 851 aaKnown RBP11.69□□□□□ -0.54
USP54-203ENST00000418501 TRAPPC8Q9Y2L5 1435 aa11.68□□□□□ -0.54
USP54-203ENST00000418501 PZPP20742 1482 aa11.67□□□□□ -0.54
USP54-203ENST00000418501 ATP7AQ04656 1500 aa11.67□□□□□ -0.54
USP54-203ENST00000418501 FOXD1Q16676 465 aa11.67□□□□□ -0.54
USP54-203ENST00000418501 FAM135AQ9P2D6 1515 aa11.65□□□□□ -0.54
USP54-203ENST00000418501 POGZQ7Z3K3 1410 aa11.64□□□□□ -0.55
USP54-203ENST00000418501 PPP6R1Q9UPN7 881 aa11.64□□□□□ -0.55
USP54-203ENST00000418501 ARHGEF12Q9NZN5 1544 aa11.63□□□□□ -0.55
USP54-203ENST00000418501 ARID4BQ4LE39 1312 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms