RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-208	ENST00000417285	PCF11	O94913	1555 aa	Known RBP	40.91	■■■■■ 4.14
VEGFA-208	ENST00000417285	FYCO1	Q9BQS8	1478 aa		40.9	■■■■■ 4.14
VEGFA-208	ENST00000417285	LRRIQ1	Q96JM4	1722 aa		40.9	■■■■■ 4.14
VEGFA-208	ENST00000417285	PTPRM	P28827	1452 aa		40.9	■■■■■ 4.14
VEGFA-208	ENST00000417285	ZFYVE16	Q7Z3T8	1539 aa		40.89	■■■■■ 4.14
VEGFA-208	ENST00000417285	YEATS2	Q9ULM3	1422 aa		40.87	■■■■■ 4.13
VEGFA-208	ENST00000417285	ARHGAP5	Q13017	1502 aa		40.87	■■■■■ 4.13
VEGFA-208	ENST00000417285	BCORL1	Q5H9F3	1711 aa		40.87	■■■■■ 4.13
VEGFA-208	ENST00000417285	HECW2	Q9P2P5	1572 aa		40.86	■■■■■ 4.13
VEGFA-208	ENST00000417285	AFAP1	Q8N556	730 aa		40.79	■■■■■ 4.12
VEGFA-208	ENST00000417285	ZNF518A	Q6AHZ1	1483 aa		40.78	■■■■■ 4.12
VEGFA-208	ENST00000417285	ATP10A	O60312	1499 aa		40.77	■■■■■ 4.12
VEGFA-208	ENST00000417285	MADD	Q8WXG6	1647 aa		40.72	■■■■■ 4.11
VEGFA-208	ENST00000417285	MYT1L	Q9UL68	1186 aa		40.7	■■■■■ 4.11
VEGFA-208	ENST00000417285	MLEC	Q14165	292 aa		40.68	■■■■■ 4.1
VEGFA-208	ENST00000417285	C9orf84	Q5VXU9	1444 aa		40.67	■■■■■ 4.1
VEGFA-208	ENST00000417285	CDC42BPB	Q9Y5S2	1711 aa		40.67	■■■■■ 4.1
VEGFA-208	ENST00000417285	PREX2	Q70Z35	1606 aa		40.64	■■■■■ 4.1
VEGFA-208	ENST00000417285	KDM5C	P41229	1560 aa		40.63	■■■■■ 4.09
VEGFA-208	ENST00000417285	MLH3	Q9UHC1	1453 aa		40.59	■■■■■ 4.09
VEGFA-208	ENST00000417285	CEP162	Q5TB80	1403 aa		40.59	■■■■■ 4.09
VEGFA-208	ENST00000417285	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.57	■■■■■ 4.09
VEGFA-208	ENST00000417285	MTUS2	Q5JR59	1369 aa		40.57	■■■■■ 4.08
VEGFA-208	ENST00000417285	TRAPPC8	Q9Y2L5	1435 aa		40.57	■■■■■ 4.08
VEGFA-208	ENST00000417285	SIGLEC1	Q9BZZ2	1709 aa		40.56	■■■■■ 4.08
VEGFA-208	ENST00000417285	ARHGEF12	Q9NZN5	1544 aa		40.56	■■■■■ 4.08
VEGFA-208	ENST00000417285	RIMS1	Q86UR5	1692 aa	Known RBP	40.56	■■■■■ 4.08
VEGFA-208	ENST00000417285	ABCC1	P33527	1531 aa		40.55	■■■■■ 4.08
VEGFA-208	ENST00000417285	GPATCH8	Q9UKJ3	1502 aa	Known RBP	40.55	■■■■■ 4.08
VEGFA-208	ENST00000417285	CFDP1	Q9UEE9	299 aa	Predicted RBP	40.53	■■■■■ 4.08
VEGFA-208	ENST00000417285	CCNB3	Q8WWL7	1395 aa		40.51	■■■■■ 4.08
VEGFA-208	ENST00000417285	CDC42BPA	Q5VT25	1732 aa		40.5	■■■■■ 4.07
VEGFA-208	ENST00000417285	PLPPR3	Q6T4P5	718 aa		40.49	■■■■■ 4.07
VEGFA-208	ENST00000417285	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.44	■■■■■ 4.06	1e-12	■■■■■ 34.3
VEGFA-208	ENST00000417285	RERE	Q9P2R6	1566 aa		40.43	■■■■■ 4.06
VEGFA-208	ENST00000417285	DIP2C	Q9Y2E4	1556 aa		40.43	■■■■■ 4.06
VEGFA-208	ENST00000417285	KIAA1107	Q9UPP5	1409 aa		40.42	■■■■■ 4.06
VEGFA-208	ENST00000417285	LMTK3	Q96Q04	1460 aa		40.42	■■■■■ 4.06
VEGFA-208	ENST00000417285	ITSN2	Q9NZM3	1697 aa		40.42	■■■■■ 4.06
VEGFA-208	ENST00000417285	PLEKHH2	Q8IVE3	1493 aa		40.41	■■■■■ 4.06
VEGFA-208	ENST00000417285	LOC105371045	A0A1W2PR82	267 aa		40.4	■■■■■ 4.06
VEGFA-208	ENST00000417285	SPAG9	O60271	1321 aa	Known RBP	40.39	■■■■■ 4.06
VEGFA-208	ENST00000417285	FER1L4	A9Z1Z3	1794 aa		40.38	■■■■■ 4.06
VEGFA-208	ENST00000417285	SAMD9L	Q8IVG5	1584 aa		40.36	■■■■■ 4.05
VEGFA-208	ENST00000417285	ILDR1	Q86SU0	546 aa	Predicted RBP	40.36	■■■■■ 4.05
VEGFA-208	ENST00000417285	AGL	P35573	1532 aa		40.35	■■■■■ 4.05
VEGFA-208	ENST00000417285	ABCA6	Q8N139	1617 aa		40.34	■■■■■ 4.05
VEGFA-208	ENST00000417285	ESF1	Q9H501	851 aa	Known RBP	40.33	■■■■■ 4.05
VEGFA-208	ENST00000417285	EHBP1L1	Q8N3D4	1523 aa		40.32	■■■■■ 4.04
VEGFA-208	ENST00000417285	SYCP2	Q9BX26	1530 aa		40.32	■■■■■ 4.04
VEGFA-208	ENST00000417285	CEBPA	P49715	358 aa	Predicted RBP	40.3	■■■■■ 4.04
VEGFA-208	ENST00000417285	KIDINS220	Q9ULH0	1771 aa		40.29	■■■■■ 4.04
VEGFA-208	ENST00000417285	HSPA2	P54652	639 aa		40.28	■■■■■ 4.04
VEGFA-208	ENST00000417285	ZNF644	Q9H582	1327 aa	Predicted RBP	40.22	■■■■■ 4.03
VEGFA-208	ENST00000417285	TIAM1	Q13009	1591 aa		40.18	■■■■■ 4.02
VEGFA-208	ENST00000417285	VPS8	Q8N3P4	1428 aa		40.17	■■■■■ 4.02
VEGFA-208	ENST00000417285	ATP7A	Q04656	1500 aa		40.15	■■■■■ 4.02
VEGFA-208	ENST00000417285	CNTLN	Q9NXG0	1405 aa		40.15	■■■■■ 4.02
VEGFA-208	ENST00000417285	RSPH4A	Q5TD94	716 aa		40.13	■■■■■ 4.01
VEGFA-208	ENST00000417285	NCOA2	Q15596	1464 aa		40.12	■■■■■ 4.01
VEGFA-208	ENST00000417285	MBD5	Q9P267	1494 aa		40.12	■■■■■ 4.01
VEGFA-208	ENST00000417285	SETD1B	Q9UPS6	1966 aa	Known RBP	40.1	■■■■■ 4.01
VEGFA-208	ENST00000417285	A2M	P01023	1474 aa		40.08	■■■■■ 4.01
VEGFA-208	ENST00000417285	INO80	Q9ULG1	1556 aa	Predicted RBP	40.06	■■■■■ 4
VEGFA-208	ENST00000417285	SUPT6H	Q7KZ85	1726 aa	Known RBP	40.06	■■■■■ 4
VEGFA-208	ENST00000417285	RTEL1-TNFRSF6B	F6WH68	1400 aa		40.06	■■■■■ 4
VEGFA-208	ENST00000417285	UHRF1BP1	Q6BDS2	1440 aa		40.06	■■■■■ 4
VEGFA-208	ENST00000417285	PREX1	Q8TCU6	1659 aa		40.05	■■■■■ 4
VEGFA-208	ENST00000417285	PPP6R1	Q9UPN7	881 aa		40.04	■■■■■ 4
VEGFA-208	ENST00000417285	LRRC9	Q6ZRR7	1453 aa		40	■■■■□ 3.99
VEGFA-208	ENST00000417285	FBXO41	Q8TF61	875 aa		40	■■■■□ 3.99
VEGFA-208	ENST00000417285	DMRT2	Q9Y5R5	561 aa		39.99	■■■■□ 3.99
VEGFA-208	ENST00000417285	ZMYM3	Q14202	1370 aa		39.98	■■■■□ 3.99
VEGFA-208	ENST00000417285	MAP3K1	Q13233	1512 aa		39.98	■■■■□ 3.99
VEGFA-208	ENST00000417285	GGT6	Q6P531	493 aa		39.98	■■■■□ 3.99
VEGFA-208	ENST00000417285	PLXNC1	O60486	1568 aa		39.97	■■■■□ 3.99
VEGFA-208	ENST00000417285	C3	P01024	1663 aa		39.97	■■■■□ 3.99
VEGFA-208	ENST00000417285	DHX29	Q7Z478	1369 aa	Known RBP	39.94	■■■■□ 3.98
VEGFA-208	ENST00000417285	TSPY4	P0CV99	314 aa		39.93	■■■■□ 3.98
VEGFA-208	ENST00000417285	TSPY10	P0CW01	314 aa		39.93	■■■■□ 3.98
VEGFA-208	ENST00000417285	CAMSAP2	Q08AD1	1489 aa		39.93	■■■■□ 3.98
VEGFA-208	ENST00000417285	CCDC141	Q6ZP82	1450 aa		39.93	■■■■□ 3.98
VEGFA-208	ENST00000417285	KANK4	Q5T7N3	995 aa	Predicted RBP	39.92	■■■■□ 3.98
VEGFA-208	ENST00000417285	NPAT	Q14207	1427 aa		39.91	■■■■□ 3.98
VEGFA-208	ENST00000417285	ADGB	Q8N7X0	1667 aa		39.9	■■■■□ 3.98
VEGFA-208	ENST00000417285	APLP2	Q06481	763 aa		39.87	■■■■□ 3.97
VEGFA-208	ENST00000417285	MROH2A	A6NES4	1674 aa		39.86	■■■■□ 3.97
VEGFA-208	ENST00000417285	KIF3B	O15066	747 aa		39.8	■■■■□ 3.96
VEGFA-208	ENST00000417285	ARHGEF5	Q12774	1597 aa		39.79	■■■■□ 3.96
VEGFA-208	ENST00000417285	MIA2	Q96PC5	1412 aa		39.78	■■■■□ 3.96
VEGFA-208	ENST00000417285	CERK	Q8TCT0	537 aa		39.76	■■■■□ 3.96
VEGFA-208	ENST00000417285	MYOM3	Q5VTT5	1437 aa		39.74	■■■■□ 3.95
VEGFA-208	ENST00000417285	CLTC	Q00610	1675 aa	Known RBP	39.73	■■■■□ 3.95
VEGFA-208	ENST00000417285	PTPRK	Q15262	1439 aa		39.73	■■■■□ 3.95
VEGFA-208	ENST00000417285	STRC	Q7RTU9	1775 aa		39.71	■■■■□ 3.95
VEGFA-208	ENST00000417285	PTPRT	O14522	1441 aa		39.7	■■■■□ 3.95
VEGFA-208	ENST00000417285	WASHC2C	Q9Y4E1	1318 aa		39.66	■■■■□ 3.94
VEGFA-208	ENST00000417285	NCOA1	Q15788	1441 aa		39.64	■■■■□ 3.94
VEGFA-208	ENST00000417285	FAM135A	Q9P2D6	1515 aa		39.6	■■■■□ 3.93
VEGFA-208	ENST00000417285	MAST1	Q9Y2H9	1570 aa		39.58	■■■■□ 3.93

Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms