RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZFYVE16Q7Z3T8 1539 aa18.96■□□□□ 0.63
USP4-204ENST00000416417 MLECQ14165 292 aa18.95■□□□□ 0.62
USP4-204ENST00000416417 ZMYM4Q5VZL5 1548 aa18.95■□□□□ 0.62
USP4-204ENST00000416417 TROQ12816 1431 aaPredicted RBP18.95■□□□□ 0.62
USP4-204ENST00000416417 EFCAB2Q5VUJ9 269 aa18.95■□□□□ 0.62
USP4-204ENST00000416417 POGZQ7Z3K3 1410 aa18.94■□□□□ 0.62
USP4-204ENST00000416417 RIMS1Q86UR5 1692 aaKnown RBP18.93■□□□□ 0.62
USP4-204ENST00000416417 PCF11O94913 1555 aaKnown RBP18.93■□□□□ 0.62
USP4-204ENST00000416417 MYO5CQ9NQX4 1742 aa18.93■□□□□ 0.62
USP4-204ENST00000416417 ARHGAP5Q13017 1502 aa18.91■□□□□ 0.62
USP4-204ENST00000416417 CLIP1P30622 1438 aa18.9■□□□□ 0.62
USP4-204ENST00000416417 CASKIN1Q8WXD9 1431 aa18.89■□□□□ 0.61
USP4-204ENST00000416417 AFAP1Q8N556 730 aa18.89■□□□□ 0.61
USP4-204ENST00000416417 MAGI2Q86UL8 1455 aa18.88■□□□□ 0.61
USP4-204ENST00000416417 MYT1LQ9UL68 1186 aa18.86■□□□□ 0.61
USP4-204ENST00000416417 ATP10AO60312 1499 aa18.84■□□□□ 0.61
USP4-204ENST00000416417 LMTK3Q96Q04 1460 aa18.84■□□□□ 0.61
USP4-204ENST00000416417 HSPA2P54652 639 aa18.84■□□□□ 0.61
USP4-204ENST00000416417 CDC42BPBQ9Y5S2 1711 aa18.83■□□□□ 0.6
USP4-204ENST00000416417 CCDC18Q5T9S5 1454 aa18.83■□□□□ 0.6
USP4-204ENST00000416417 C9orf84Q5VXU9 1444 aa18.82■□□□□ 0.6
USP4-204ENST00000416417 ZNF518AQ6AHZ1 1483 aa18.81■□□□□ 0.6
USP4-204ENST00000416417 ARHGEF12Q9NZN5 1544 aa18.8■□□□□ 0.6
USP4-204ENST00000416417 TRAPPC8Q9Y2L5 1435 aa18.8■□□□□ 0.6
USP4-204ENST00000416417 FYCO1Q9BQS8 1478 aa18.8■□□□□ 0.6
USP4-204ENST00000416417 FER1L4A9Z1Z3 1794 aa18.79■□□□□ 0.6
USP4-204ENST00000416417 PREX2Q70Z35 1606 aa18.79■□□□□ 0.6
USP4-204ENST00000416417 CEBPAP49715 358 aaPredicted RBP18.79■□□□□ 0.6
USP4-204ENST00000416417 KDM5CP41229 1560 aa18.78■□□□□ 0.6
USP4-204ENST00000416417 ZNF777Q9ULD5 760 aaPredicted RBP18.78■□□□□ 0.6
USP4-204ENST00000416417 ABCC1P33527 1531 aa18.76■□□□□ 0.59
USP4-204ENST00000416417 DIP2CQ9Y2E4 1556 aa18.76■□□□□ 0.59
USP4-204ENST00000416417 CDC42BPAQ5VT25 1732 aa18.74■□□□□ 0.59
USP4-204ENST00000416417 ABCA6Q8N139 1617 aa18.74■□□□□ 0.59
USP4-204ENST00000416417 ITSN2Q9NZM3 1697 aa18.73■□□□□ 0.59
USP4-204ENST00000416417 MLH3Q9UHC1 1453 aa18.71■□□□□ 0.59
USP4-204ENST00000416417 HNRNPMP52272 730 aaKnown RBP eCLIP18.7■□□□□ 0.58
USP4-204ENST00000416417 GPATCH8Q9UKJ3 1502 aaKnown RBP18.7■□□□□ 0.58
USP4-204ENST00000416417 SAMD9LQ8IVG5 1584 aa18.69■□□□□ 0.58
USP4-204ENST00000416417 SYCP2Q9BX26 1530 aa18.68■□□□□ 0.58
USP4-204ENST00000416417 KIDINS220Q9ULH0 1771 aa18.67■□□□□ 0.58
USP4-204ENST00000416417 MTUS2Q5JR59 1369 aa18.66■□□□□ 0.58
USP4-204ENST00000416417 REREQ9P2R6 1566 aa18.65■□□□□ 0.58
USP4-204ENST00000416417 FBXO41Q8TF61 875 aa18.65■□□□□ 0.58
USP4-204ENST00000416417 CFDP1Q9UEE9 299 aaPredicted RBP18.65■□□□□ 0.58
USP4-204ENST00000416417 CCNB3Q8WWL7 1395 aa18.65■□□□□ 0.58
USP4-204ENST00000416417 CEP162Q5TB80 1403 aa18.64■□□□□ 0.57
USP4-204ENST00000416417 SPAG9O60271 1321 aaKnown RBP18.63■□□□□ 0.57
USP4-204ENST00000416417 ZNF644Q9H582 1327 aaPredicted RBP18.62■□□□□ 0.57
USP4-204ENST00000416417 AGLP35573 1532 aa18.61■□□□□ 0.57
USP4-204ENST00000416417 ESF1Q9H501 851 aaKnown RBP18.61■□□□□ 0.57
USP4-204ENST00000416417 PREX1Q8TCU6 1659 aa18.61■□□□□ 0.57
USP4-204ENST00000416417 LOC105371045A0A1W2PR82 267 aa18.59■□□□□ 0.57
USP4-204ENST00000416417 C3P01024 1663 aa18.59■□□□□ 0.57
USP4-204ENST00000416417 UHRF1BP1Q6BDS2 1440 aa18.57■□□□□ 0.56
USP4-204ENST00000416417 TIAM1Q13009 1591 aa18.57■□□□□ 0.56
USP4-204ENST00000416417 ATP7AQ04656 1500 aa18.57■□□□□ 0.56
USP4-204ENST00000416417 SUPT6HQ7KZ85 1726 aaKnown RBP18.56■□□□□ 0.56
USP4-204ENST00000416417 KIAA1107Q9UPP5 1409 aa18.56■□□□□ 0.56
USP4-204ENST00000416417 EHBP1L1Q8N3D4 1523 aa18.55■□□□□ 0.56
USP4-204ENST00000416417 PLEKHH2Q8IVE3 1493 aa18.54■□□□□ 0.56
USP4-204ENST00000416417 INO80Q9ULG1 1556 aaPredicted RBP18.54■□□□□ 0.56
USP4-204ENST00000416417 CERKQ8TCT0 537 aa18.53■□□□□ 0.56
USP4-204ENST00000416417 STRCQ7RTU9 1775 aa18.52■□□□□ 0.56
USP4-204ENST00000416417 A2MP01023 1474 aa18.52■□□□□ 0.55
USP4-204ENST00000416417 GGT6Q6P531 493 aa18.51■□□□□ 0.55
USP4-204ENST00000416417 MBD5Q9P267 1494 aa18.5■□□□□ 0.55
USP4-204ENST00000416417 CNTLNQ9NXG0 1405 aa18.49■□□□□ 0.55
USP4-204ENST00000416417 ZMYM3Q14202 1370 aa18.49■□□□□ 0.55
USP4-204ENST00000416417 PLXNC1O60486 1568 aa18.48■□□□□ 0.55
USP4-204ENST00000416417 NCOA2Q15596 1464 aa18.48■□□□□ 0.55
USP4-204ENST00000416417 CLTCQ00610 1675 aaKnown RBP18.47■□□□□ 0.55
USP4-204ENST00000416417 SETD1BQ9UPS6 1966 aaKnown RBP18.45■□□□□ 0.54
USP4-204ENST00000416417 MROH2AA6NES4 1674 aa18.44■□□□□ 0.54
USP4-204ENST00000416417 CAMSAP2Q08AD1 1489 aa18.44■□□□□ 0.54
USP4-204ENST00000416417 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
USP4-204ENST00000416417 ADGBQ8N7X0 1667 aa18.42■□□□□ 0.54
USP4-204ENST00000416417 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
USP4-204ENST00000416417 NPATQ14207 1427 aa18.41■□□□□ 0.54
USP4-204ENST00000416417 NCOA1Q15788 1441 aa18.4■□□□□ 0.54
USP4-204ENST00000416417 KANK4Q5T7N3 995 aaPredicted RBP18.4■□□□□ 0.54
USP4-204ENST00000416417 CCDC141Q6ZP82 1450 aa18.4■□□□□ 0.54
USP4-204ENST00000416417 NCKAP5LQ9HCH0 1330 aa18.4■□□□□ 0.54
USP4-204ENST00000416417 DHX29Q7Z478 1369 aaKnown RBP18.4■□□□□ 0.54
USP4-204ENST00000416417 RTEL1-TNFRSF6BF6WH68 1400 aa18.39■□□□□ 0.54
USP4-204ENST00000416417 PTPRKQ15262 1439 aa18.39■□□□□ 0.54
USP4-204ENST00000416417 CAMSAP1Q5T5Y3 1602 aa18.39■□□□□ 0.54
USP4-204ENST00000416417 PTPRTO14522 1441 aa18.39■□□□□ 0.53
USP4-204ENST00000416417 LRRC9Q6ZRR7 1453 aa18.39■□□□□ 0.53
USP4-204ENST00000416417 KIF3BO15066 747 aa18.39■□□□□ 0.53
USP4-204ENST00000416417 MYO3AQ8NEV4 1616 aa18.36■□□□□ 0.53
USP4-204ENST00000416417 FBXO31Q5XUX0 539 aaPredicted RBP18.34■□□□□ 0.53
USP4-204ENST00000416417 CEP170BQ9Y4F5 1589 aaPredicted RBP18.32■□□□□ 0.52
USP4-204ENST00000416417 TSPY4P0CV99 314 aa18.32■□□□□ 0.52
USP4-204ENST00000416417 TSPY10P0CW01 314 aa18.32■□□□□ 0.52
USP4-204ENST00000416417 PPP6R1Q9UPN7 881 aa18.32■□□□□ 0.52
USP4-204ENST00000416417 RSPH4AQ5TD94 716 aa18.31■□□□□ 0.52
USP4-204ENST00000416417 LTBP4Q8N2S1 1624 aa18.31■□□□□ 0.52
USP4-204ENST00000416417 ARHGEF5Q12774 1597 aa18.31■□□□□ 0.52
USP4-204ENST00000416417 ZNF142P52746 1687 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms