RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 BCANQ96GW7 911 aa10.63□□□□□ -0.71
VPS54-204ENST00000416400 TMC2Q8TDI7 906 aa10.62□□□□□ -0.71
VPS54-204ENST00000416400 TMEM121BQ9BXQ6 578 aaPredicted RBP10.61□□□□□ -0.71
VPS54-204ENST00000416400 LARP6Q9BRS8 491 aaKnown RBP10.6□□□□□ -0.71
VPS54-204ENST00000416400 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.57□□□□□ -0.72
VPS54-204ENST00000416400 DDX27Q96GQ7 796 aaKnown RBP10.56□□□□□ -0.72
VPS54-204ENST00000416400 CRISPLD2Q9H0B8 497 aa10.56□□□□□ -0.72
VPS54-204ENST00000416400 NCKAP5LQ9HCH0 1330 aa10.56□□□□□ -0.72
VPS54-204ENST00000416400 GPHNQ9NQX3 736 aaPredicted RBP10.55□□□□□ -0.72
VPS54-204ENST00000416400 MAMSTRQ6ZN01 415 aa10.54□□□□□ -0.72
VPS54-204ENST00000416400 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
VPS54-204ENST00000416400 SCUBE2Q9NQ36 999 aa10.53□□□□□ -0.72
VPS54-204ENST00000416400 PPP1R15BQ5SWA1 713 aa10.51□□□□□ -0.73
VPS54-204ENST00000416400 C2orf72A6NCS6 295 aa10.5□□□□□ -0.73
VPS54-204ENST00000416400 MFSD10Q14728 455 aa10.5□□□□□ -0.73
VPS54-204ENST00000416400 E2F4Q16254 413 aa10.5□□□□□ -0.73
VPS54-204ENST00000416400 FOXK1P85037 733 aa10.47□□□□□ -0.73
VPS54-204ENST00000416400 DSG2Q14126 1118 aa10.46□□□□□ -0.73
VPS54-204ENST00000416400 NBR1Q14596 966 aa10.46□□□□□ -0.73
VPS54-204ENST00000416400 POTEB2H3BUK9 544 aa10.45□□□□□ -0.74
VPS54-204ENST00000416400 PLPP6Q8IY26 295 aa10.45□□□□□ -0.74
VPS54-204ENST00000416400 KIF3CO14782 793 aa10.44□□□□□ -0.74
VPS54-204ENST00000416400 TMEM92Q6UXU6 159 aa10.44□□□□□ -0.74
VPS54-204ENST00000416400 SLAIN1Q8ND83 568 aa10.43□□□□□ -0.74
VPS54-204ENST00000416400 POTEJP0CG39 1038 aa10.41□□□□□ -0.74
VPS54-204ENST00000416400 KCNV2Q8TDN2 545 aa10.41□□□□□ -0.74
VPS54-204ENST00000416400 ARHGEF1Q92888 912 aaKnown RBP10.4□□□□□ -0.74
VPS54-204ENST00000416400 POTEMA6NI47 508 aa10.38□□□□□ -0.75
VPS54-204ENST00000416400 CAMK2BQ13554 666 aa10.38□□□□□ -0.75
VPS54-204ENST00000416400 TBC1D12O60347 775 aa10.36□□□□□ -0.75
VPS54-204ENST00000416400 MAP3K9P80192 1104 aa10.35□□□□□ -0.75
VPS54-204ENST00000416400 UPF1Q92900 1129 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS54-204ENST00000416400 ZNF316A6NFI3 1004 aaPredicted RBP10.33□□□□□ -0.76
VPS54-204ENST00000416400 RIMBP2O15034 1052 aa10.33□□□□□ -0.76
VPS54-204ENST00000416400 SNPHO15079 494 aa10.33□□□□□ -0.76
VPS54-204ENST00000416400 PRKCSHP14314 528 aaPredicted RBP10.33□□□□□ -0.76
VPS54-204ENST00000416400 DOK7Q18PE1 504 aa10.33□□□□□ -0.76
VPS54-204ENST00000416400 TULP1O00294 542 aaPredicted RBP10.32□□□□□ -0.76
VPS54-204ENST00000416400 POTEGQ6S5H5 508 aa10.32□□□□□ -0.76
VPS54-204ENST00000416400 DPYSL4O14531 572 aa10.31□□□□□ -0.76
VPS54-204ENST00000416400 EMILIN3Q9NT22 766 aa10.31□□□□□ -0.76
VPS54-204ENST00000416400 ARIH1Q9Y4X5 557 aaPredicted RBP10.31□□□□□ -0.76
VPS54-204ENST00000416400 ZNF710Q8N1W2 664 aa10.3□□□□□ -0.76
VPS54-204ENST00000416400 SLC34A2O95436 690 aa10.29□□□□□ -0.76
VPS54-204ENST00000416400 TPRNQ4KMQ1 711 aa10.29□□□□□ -0.76
VPS54-204ENST00000416400 OTUD5Q96G74 571 aa10.29□□□□□ -0.76
VPS54-204ENST00000416400 SPDYE16A6NNV3 312 aaPredicted RBP10.28□□□□□ -0.76
VPS54-204ENST00000416400 OXER1Q8TDS5 423 aa10.28□□□□□ -0.76
VPS54-204ENST00000416400 PTCD2Q8WV60 388 aaKnown RBP10.26□□□□□ -0.77
VPS54-204ENST00000416400 SMYD5Q6GMV2 418 aa10.25□□□□□ -0.77
VPS54-204ENST00000416400 ZSWIM6Q9HCJ5 1215 aa10.23□□□□□ -0.77
VPS54-204ENST00000416400 PCDHGA4Q9Y5G9 962 aa10.23□□□□□ -0.77
VPS54-204ENST00000416400 SEMA3EO15041 775 aa10.22□□□□□ -0.77
VPS54-204ENST00000416400 EVI5O60447 810 aa10.22□□□□□ -0.77
VPS54-204ENST00000416400 PDIA6Q15084 440 aa10.22□□□□□ -0.77
VPS54-204ENST00000416400 HOXB3P14651 431 aaPredicted RBP10.2□□□□□ -0.78
VPS54-204ENST00000416400 ARSIQ5FYB1 569 aa10.18□□□□□ -0.78
VPS54-204ENST00000416400 PCDH10Q9P2E7 1040 aa10.18□□□□□ -0.78
VPS54-204ENST00000416400 TESPA1A2RU30 521 aaPredicted RBP10.17□□□□□ -0.78
VPS54-204ENST00000416400 GRXCR2A6NFK2 248 aa10.16□□□□□ -0.78
VPS54-204ENST00000416400 NUDT7P0C024 238 aa10.14□□□□□ -0.79
VPS54-204ENST00000416400 GPR153Q6NV75 609 aa10.13□□□□□ -0.79
VPS54-204ENST00000416400 DDX12PQ92771 950 aa10.13□□□□□ -0.79
VPS54-204ENST00000416400 MLLT3P42568 568 aaPredicted RBP10.12□□□□□ -0.79
VPS54-204ENST00000416400 PTGER2P43116 358 aa10.12□□□□□ -0.79
VPS54-204ENST00000416400 ANO8Q9HCE9 1232 aaPredicted RBP10.12□□□□□ -0.79
VPS54-204ENST00000416400 HOXB1P14653 301 aaPredicted RBP10.11□□□□□ -0.79
VPS54-204ENST00000416400 KHSRPQ92945 711 aaKnown RBP eCLIP10.11□□□□□ -0.797e-14■■■□□ 14.8
VPS54-204ENST00000416400 LMOD2Q6P5Q4 547 aa10.1□□□□□ -0.79
VPS54-204ENST00000416400 FAM163AQ96GL9 167 aaPredicted RBP10.1□□□□□ -0.79
VPS54-204ENST00000416400 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS54-204ENST00000416400 EPAS1Q99814 870 aa10.09□□□□□ -0.79
VPS54-204ENST00000416400 PSDA5PKW4 1024 aaPredicted RBP10.08□□□□□ -0.8
VPS54-204ENST00000416400 PHF14O94880 888 aa10.08□□□□□ -0.8
VPS54-204ENST00000416400 ZNF454Q8N9F8 522 aa10.07□□□□□ -0.8
VPS54-204ENST00000416400 JPH4Q96JJ6 628 aa10.06□□□□□ -0.8
VPS54-204ENST00000416400 TYW1BQ6NUM6 668 aa10.05□□□□□ -0.8
VPS54-204ENST00000416400 FBXW7Q969H0 707 aa10.05□□□□□ -0.8
VPS54-204ENST00000416400 LHX6Q9UPM6 363 aa10.05□□□□□ -0.8
VPS54-204ENST00000416400 KDM4FA0A1W2PPD8 638 aa10.04□□□□□ -0.8
VPS54-204ENST00000416400 ST18O60284 1047 aa10.04□□□□□ -0.8
VPS54-204ENST00000416400 PPP4R3BQ5MIZ7 849 aa10.04□□□□□ -0.8
VPS54-204ENST00000416400 ERBB3P21860 1342 aa10.04□□□□□ -0.8
VPS54-204ENST00000416400 NUTM2FA1L443 756 aa10.03□□□□□ -0.8
VPS54-204ENST00000416400 RBM26Q5T8P6 1007 aaKnown RBP10.03□□□□□ -0.8
VPS54-204ENST00000416400 MAP3K7O43318 606 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 OSBPP22059 807 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 FOSBP53539 338 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 EMP3P54852 163 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 GPIHBP1Q8IV16 184 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 ZDHHC16Q969W1 377 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 RBM33Q96EV2 1170 aaKnown RBP10.02□□□□□ -0.81
VPS54-204ENST00000416400 PCDHGA10Q9Y5H3 936 aa10.02□□□□□ -0.81
VPS54-204ENST00000416400 EN1Q05925 392 aaPredicted RBP9.99□□□□□ -0.81
VPS54-204ENST00000416400 KCNH8Q96L42 1107 aa9.99□□□□□ -0.81
VPS54-204ENST00000416400 MARVELD3Q96A59 401 aa9.98□□□□□ -0.81
VPS54-204ENST00000416400 VARS2Q5ST30 1063 aaKnown RBP9.96□□□□□ -0.82
VPS54-204ENST00000416400 FAM205CA6NFA0 338 aa9.95□□□□□ -0.82
VPS54-204ENST00000416400 FCHSD2O94868 740 aa9.95□□□□□ -0.82
VPS54-204ENST00000416400 PTPREP23469 700 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms