RNA–Protein interactions for RNA: ENST00000415357.1

LINC01090-201, Transcript of long intergenic non-protein coding RNA 1090, humanhuman

TSL 3 BASIC

Gene LINC01090, Length 881 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01090-201ENST00000415357 CD109Q6YHK3 1445 aa15.69■□□□□ 0.1
LINC01090-201ENST00000415357 TEX14Q8IWB6 1497 aa15.69■□□□□ 0.1
LINC01090-201ENST00000415357 CDK13Q14004 1512 aaKnown RBP15.68■□□□□ 0.1
LINC01090-201ENST00000415357 COL17A1Q9UMD9 1497 aaPredicted RBP15.67■□□□□ 0.1
LINC01090-201ENST00000415357 FMN1Q68DA7 1419 aa15.67■□□□□ 0.1
LINC01090-201ENST00000415357 MAGI3Q5TCQ9 1506 aa15.66■□□□□ 0.1
LINC01090-201ENST00000415357 ABCA9Q8IUA7 1624 aa15.65■□□□□ 0.1
LINC01090-201ENST00000415357 ATP1B4Q9UN42 357 aaPredicted RBP15.64■□□□□ 0.09
LINC01090-201ENST00000415357 HECW1Q76N89 1606 aa15.64■□□□□ 0.09
LINC01090-201ENST00000415357 CLIP1P30622 1438 aa15.6■□□□□ 0.09
LINC01090-201ENST00000415357 PLEKHD1A6NEE1 506 aa15.6■□□□□ 0.09
LINC01090-201ENST00000415357 PCF11O94913 1555 aaKnown RBP15.6■□□□□ 0.09
LINC01090-201ENST00000415357 LRRIQ1Q96JM4 1722 aa15.59■□□□□ 0.09
LINC01090-201ENST00000415357 TTC37Q6PGP7 1564 aa15.58■□□□□ 0.08
LINC01090-201ENST00000415357 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.57■□□□□ 0.08
LINC01090-201ENST00000415357 CASKIN1Q8WXD9 1431 aa15.54■□□□□ 0.08
LINC01090-201ENST00000415357 KIF14Q15058 1648 aa15.52■□□□□ 0.08
LINC01090-201ENST00000415357 ARAP3Q8WWN8 1544 aa15.52■□□□□ 0.07
LINC01090-201ENST00000415357 NEO1Q92859 1461 aa15.52■□□□□ 0.07
LINC01090-201ENST00000415357 FYCO1Q9BQS8 1478 aa15.51■□□□□ 0.07
LINC01090-201ENST00000415357 CEP162Q5TB80 1403 aa15.51■□□□□ 0.07
LINC01090-201ENST00000415357 LOC105371045A0A1W2PR82 267 aa15.5■□□□□ 0.07
LINC01090-201ENST00000415357 TROQ12816 1431 aaPredicted RBP15.5■□□□□ 0.07
LINC01090-201ENST00000415357 CCDC18Q5T9S5 1454 aa15.49■□□□□ 0.07
LINC01090-201ENST00000415357 ZBTB12Q9Y330 459 aaPredicted RBP15.49■□□□□ 0.07
LINC01090-201ENST00000415357 FANCAO15360 1455 aa15.48■□□□□ 0.07
LINC01090-201ENST00000415357 CDK11AQ9UQ88 783 aaPredicted RBP15.48■□□□□ 0.07
LINC01090-201ENST00000415357 FRMPD1Q5SYB0 1578 aa15.48■□□□□ 0.07
LINC01090-201ENST00000415357 KDM4FA0A1W2PPD8 638 aa15.47■□□□□ 0.07
LINC01090-201ENST00000415357 RAPGEF3O95398 923 aa15.47■□□□□ 0.07
LINC01090-201ENST00000415357 PHLDB1Q86UU1 1377 aa15.47■□□□□ 0.07
LINC01090-201ENST00000415357 CFAP74Q9C0B2 1584 aa15.46■□□□□ 0.07
LINC01090-201ENST00000415357 AKNAQ7Z591 1439 aa15.46■□□□□ 0.07
LINC01090-201ENST00000415357 MYO5CQ9NQX4 1742 aa15.45■□□□□ 0.06
LINC01090-201ENST00000415357 PLCH2O75038 1416 aa15.44■□□□□ 0.06
LINC01090-201ENST00000415357 ADGRL1O94910 1474 aa15.44■□□□□ 0.06
LINC01090-201ENST00000415357 DENND4BO75064 1496 aaPredicted RBP15.42■□□□□ 0.06
LINC01090-201ENST00000415357 MKRN4PQ13434 485 aaPredicted RBP15.42■□□□□ 0.06
LINC01090-201ENST00000415357 RICTORQ6R327 1708 aa15.42■□□□□ 0.06
LINC01090-201ENST00000415357 ARHGAP5Q13017 1502 aa15.39■□□□□ 0.05
LINC01090-201ENST00000415357 SCAPERQ9BY12 1400 aa15.38■□□□□ 0.05
LINC01090-201ENST00000415357 PREX2Q70Z35 1606 aa15.37■□□□□ 0.05
LINC01090-201ENST00000415357 EFCAB2Q5VUJ9 269 aa15.37■□□□□ 0.05
LINC01090-201ENST00000415357 ARHGEF40Q8TER5 1519 aa15.37■□□□□ 0.05
LINC01090-201ENST00000415357 CDC42BPBQ9Y5S2 1711 aa15.37■□□□□ 0.05
LINC01090-201ENST00000415357 POGZQ7Z3K3 1410 aa15.36■□□□□ 0.05
LINC01090-201ENST00000415357 ZMYM4Q5VZL5 1548 aa15.35■□□□□ 0.05
LINC01090-201ENST00000415357 CDC42BPAQ5VT25 1732 aa15.34■□□□□ 0.05
LINC01090-201ENST00000415357 YEATS2Q9ULM3 1422 aa15.34■□□□□ 0.05
LINC01090-201ENST00000415357 MTUS2Q5JR59 1369 aa15.33■□□□□ 0.04
LINC01090-201ENST00000415357 VPS8Q8N3P4 1428 aa15.32■□□□□ 0.04
LINC01090-201ENST00000415357 ZFYVE16Q7Z3T8 1539 aa15.32■□□□□ 0.04
LINC01090-201ENST00000415357 ABCC1P33527 1531 aa15.31■□□□□ 0.04
LINC01090-201ENST00000415357 EHBP1L1Q8N3D4 1523 aa15.31■□□□□ 0.04
LINC01090-201ENST00000415357 GPATCH8Q9UKJ3 1502 aaKnown RBP15.3■□□□□ 0.04
LINC01090-201ENST00000415357 SIGLEC1Q9BZZ2 1709 aa15.29■□□□□ 0.04
LINC01090-201ENST00000415357 ARHGEF12Q9NZN5 1544 aa15.29■□□□□ 0.04
LINC01090-201ENST00000415357 TIAM1Q13009 1591 aa15.28■□□□□ 0.04
LINC01090-201ENST00000415357 ZNF518AQ6AHZ1 1483 aa15.28■□□□□ 0.04
LINC01090-201ENST00000415357 AFAP1Q8N556 730 aa15.28■□□□□ 0.04
LINC01090-201ENST00000415357 ITSN2Q9NZM3 1697 aa15.28■□□□□ 0.04
LINC01090-201ENST00000415357 SAMD9LQ8IVG5 1584 aa15.28■□□□□ 0.04
LINC01090-201ENST00000415357 MAGI2Q86UL8 1455 aa15.27■□□□□ 0.04
LINC01090-201ENST00000415357 ARID4BQ4LE39 1312 aaPredicted RBP15.27■□□□□ 0.04
LINC01090-201ENST00000415357 ZNF777Q9ULD5 760 aaPredicted RBP15.27■□□□□ 0.04
LINC01090-201ENST00000415357 KDM5CP41229 1560 aa15.27■□□□□ 0.03
LINC01090-201ENST00000415357 TRAPPC8Q9Y2L5 1435 aa15.26■□□□□ 0.03
LINC01090-201ENST00000415357 BCORL1Q5H9F3 1711 aa15.26■□□□□ 0.03
LINC01090-201ENST00000415357 CCNB3Q8WWL7 1395 aa15.26■□□□□ 0.03
LINC01090-201ENST00000415357 ADAMTSL3P82987 1691 aa15.26■□□□□ 0.03
LINC01090-201ENST00000415357 HECW2Q9P2P5 1572 aa15.24■□□□□ 0.03
LINC01090-201ENST00000415357 SYCP2Q9BX26 1530 aa15.24■□□□□ 0.03
LINC01090-201ENST00000415357 MADDQ8WXG6 1647 aa15.24■□□□□ 0.03
LINC01090-201ENST00000415357 NCOA2Q15596 1464 aa15.22■□□□□ 0.03
LINC01090-201ENST00000415357 CFDP1Q9UEE9 299 aaPredicted RBP15.22■□□□□ 0.03
LINC01090-201ENST00000415357 MYT1LQ9UL68 1186 aa15.22■□□□□ 0.03
LINC01090-201ENST00000415357 DIP2CQ9Y2E4 1556 aa15.22■□□□□ 0.03
LINC01090-201ENST00000415357 SUPT6HQ7KZ85 1726 aaKnown RBP15.22■□□□□ 0.03
LINC01090-201ENST00000415357 ABCA6Q8N139 1617 aa15.21■□□□□ 0.03
LINC01090-201ENST00000415357 ATP10AO60312 1499 aa15.21■□□□□ 0.03
LINC01090-201ENST00000415357 C9orf84Q5VXU9 1444 aa15.21■□□□□ 0.03
LINC01090-201ENST00000415357 LRRC9Q6ZRR7 1453 aa15.2■□□□□ 0.02
LINC01090-201ENST00000415357 HNRNPMP52272 730 aaKnown RBP eCLIP15.2■□□□□ 0.02
LINC01090-201ENST00000415357 MLH3Q9UHC1 1453 aa15.2■□□□□ 0.02
LINC01090-201ENST00000415357 MLECQ14165 292 aa15.19■□□□□ 0.02
LINC01090-201ENST00000415357 PTPRMP28827 1452 aa15.19■□□□□ 0.02
LINC01090-201ENST00000415357 RIMS1Q86UR5 1692 aaKnown RBP15.19■□□□□ 0.02
LINC01090-201ENST00000415357 KIDINS220Q9ULH0 1771 aa15.19■□□□□ 0.02
LINC01090-201ENST00000415357 ZNF644Q9H582 1327 aaPredicted RBP15.18■□□□□ 0.02
LINC01090-201ENST00000415357 KANK4Q5T7N3 995 aaPredicted RBP15.18■□□□□ 0.02
LINC01090-201ENST00000415357 PLEKHH2Q8IVE3 1493 aa15.17■□□□□ 0.02
LINC01090-201ENST00000415357 KIAA1107Q9UPP5 1409 aa15.17■□□□□ 0.02
LINC01090-201ENST00000415357 MAP3K1Q13233 1512 aa15.16■□□□□ 0.02
LINC01090-201ENST00000415357 REREQ9P2R6 1566 aa15.14■□□□□ 0.01
LINC01090-201ENST00000415357 SPAG9O60271 1321 aaKnown RBP15.14■□□□□ 0.01
LINC01090-201ENST00000415357 FER1L4A9Z1Z3 1794 aa15.13■□□□□ 0.01
LINC01090-201ENST00000415357 FKBP8Q14318 412 aa15.13■□□□□ 0.01
LINC01090-201ENST00000415357 INO80Q9ULG1 1556 aaPredicted RBP15.13■□□□□ 0.01
LINC01090-201ENST00000415357 CAMSAP2Q08AD1 1489 aa15.13■□□□□ 0.01
LINC01090-201ENST00000415357 MBD5Q9P267 1494 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms