RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 ITGAEP38570 1179 aa23.55■■□□□ 1.36
SHMT2-202ENST00000414700 ZNF777Q9ULD5 760 aaPredicted RBP23.54■■□□□ 1.36
SHMT2-202ENST00000414700 TCOF1Q13428 1488 aaKnown RBP23.53■■□□□ 1.36
SHMT2-202ENST00000414700 CAMSAP2Q08AD1 1489 aa23.5■■□□□ 1.35
SHMT2-202ENST00000414700 ARHGAP5Q13017 1502 aa23.5■■□□□ 1.35
SHMT2-202ENST00000414700 PLCH2O75038 1416 aa23.5■■□□□ 1.35
SHMT2-202ENST00000414700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.49■■□□□ 1.35
SHMT2-202ENST00000414700 SAMD9LQ8IVG5 1584 aa23.47■■□□□ 1.35
SHMT2-202ENST00000414700 DIP2BQ9P265 1576 aa23.46■■□□□ 1.35
SHMT2-202ENST00000414700 PELP1Q8IZL8 1130 aaKnown RBP23.46■■□□□ 1.35
SHMT2-202ENST00000414700 PTPRKQ15262 1439 aa23.44■■□□□ 1.34
SHMT2-202ENST00000414700 CD109Q6YHK3 1445 aa23.42■■□□□ 1.34
SHMT2-202ENST00000414700 FAM69CQ0P6D2 419 aa23.42■■□□□ 1.34
SHMT2-202ENST00000414700 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
SHMT2-202ENST00000414700 GLI2P10070 1586 aa23.41■■□□□ 1.34
SHMT2-202ENST00000414700 ARAP3Q8WWN8 1544 aa23.4■■□□□ 1.34
SHMT2-202ENST00000414700 KIF13AQ9H1H9 1805 aa23.4■■□□□ 1.34
SHMT2-202ENST00000414700 FANCAO15360 1455 aa23.39■■□□□ 1.34
SHMT2-202ENST00000414700 DNMT1P26358 1616 aaKnown RBP23.39■■□□□ 1.34
SHMT2-202ENST00000414700 HNRNPMP52272 730 aaKnown RBP eCLIP23.38■■□□□ 1.33
SHMT2-202ENST00000414700 EFCAB2Q5VUJ9 269 aa23.38■■□□□ 1.33
SHMT2-202ENST00000414700 ABCC5O15440 1437 aa23.37■■□□□ 1.33
SHMT2-202ENST00000414700 SYCP2Q9BX26 1530 aa23.37■■□□□ 1.33
SHMT2-202ENST00000414700 DAPK1P53355 1430 aa23.37■■□□□ 1.33
SHMT2-202ENST00000414700 MBD5Q9P267 1494 aa23.36■■□□□ 1.33
SHMT2-202ENST00000414700 ARHGEF12Q9NZN5 1544 aa23.36■■□□□ 1.33
SHMT2-202ENST00000414700 TSPOAP1O95153 1857 aa23.35■■□□□ 1.33
SHMT2-202ENST00000414700 CHIC2Q9UKJ5 165 aa23.35■■□□□ 1.33
SHMT2-202ENST00000414700 ABCC1P33527 1531 aa23.34■■□□□ 1.33
SHMT2-202ENST00000414700 CROCC2H7BZ55 1655 aa23.32■■□□□ 1.32
SHMT2-202ENST00000414700 ARHGEF5Q12774 1597 aa23.3■■□□□ 1.32
SHMT2-202ENST00000414700 KIAA1107Q9UPP5 1409 aa23.3■■□□□ 1.32
SHMT2-202ENST00000414700 PPRC1Q5VV67 1664 aaKnown RBP23.29■■□□□ 1.32
SHMT2-202ENST00000414700 PLEKHH2Q8IVE3 1493 aa23.29■■□□□ 1.32
SHMT2-202ENST00000414700 AKNAQ7Z591 1439 aa23.28■■□□□ 1.32
SHMT2-202ENST00000414700 ADGRL1O94910 1474 aa23.28■■□□□ 1.32
SHMT2-202ENST00000414700 CCDC141Q6ZP82 1450 aa23.27■■□□□ 1.32
SHMT2-202ENST00000414700 TRAPPC8Q9Y2L5 1435 aa23.27■■□□□ 1.32
SHMT2-202ENST00000414700 CFAP74Q9C0B2 1584 aa23.25■■□□□ 1.31
SHMT2-202ENST00000414700 RRP7BPQ9NSQ0 103 aa23.25■■□□□ 1.31
SHMT2-202ENST00000414700 SCAPERQ9BY12 1400 aa23.25■■□□□ 1.31
SHMT2-202ENST00000414700 C9orf84Q5VXU9 1444 aa23.23■■□□□ 1.31
SHMT2-202ENST00000414700 AFAP1Q8N556 730 aa23.23■■□□□ 1.31
SHMT2-202ENST00000414700 NEO1Q92859 1461 aa23.22■■□□□ 1.31
SHMT2-202ENST00000414700 ADGBQ8N7X0 1667 aa23.21■■□□□ 1.31
SHMT2-202ENST00000414700 HFM1A2PYH4 1435 aa23.21■■□□□ 1.31
SHMT2-202ENST00000414700 TSPY4P0CV99 314 aa23.21■■□□□ 1.31
SHMT2-202ENST00000414700 TSPY10P0CW01 314 aa23.21■■□□□ 1.31
SHMT2-202ENST00000414700 SHANK2Q9UPX8 1470 aa23.21■■□□□ 1.31
SHMT2-202ENST00000414700 NAIPQ13075 1403 aa23.2■■□□□ 1.31
SHMT2-202ENST00000414700 RSPH4AQ5TD94 716 aa23.2■■□□□ 1.3
SHMT2-202ENST00000414700 SETD5Q9C0A6 1442 aa23.19■■□□□ 1.3
SHMT2-202ENST00000414700 RAB3GAP2Q9H2M9 1393 aa23.19■■□□□ 1.3
SHMT2-202ENST00000414700 NCOA1Q15788 1441 aa23.19■■□□□ 1.3
SHMT2-202ENST00000414700 TRHP20396 242 aaPredicted RBP23.18■■□□□ 1.3
SHMT2-202ENST00000414700 ROCK1Q13464 1354 aa23.18■■□□□ 1.3
SHMT2-202ENST00000414700 ADGRL2O95490 1459 aa23.17■■□□□ 1.3
SHMT2-202ENST00000414700 GCC2Q8IWJ2 1684 aa23.16■■□□□ 1.3
SHMT2-202ENST00000414700 MAST1Q9Y2H9 1570 aa23.15■■□□□ 1.3
SHMT2-202ENST00000414700 KDM6BO15054 1643 aa23.15■■□□□ 1.3
SHMT2-202ENST00000414700 TEX14Q8IWB6 1497 aa23.15■■□□□ 1.3
SHMT2-202ENST00000414700 RAPGEF3O95398 923 aa23.13■■□□□ 1.29
SHMT2-202ENST00000414700 ANKRD30AQ9BXX3 1397 aa23.13■■□□□ 1.29
SHMT2-202ENST00000414700 POGZQ7Z3K3 1410 aa23.13■■□□□ 1.29
SHMT2-202ENST00000414700 ZNF518AQ6AHZ1 1483 aa23.13■■□□□ 1.29
SHMT2-202ENST00000414700 SPAG9O60271 1321 aaKnown RBP23.11■■□□□ 1.29
SHMT2-202ENST00000414700 ZFYVE16Q7Z3T8 1539 aa23.11■■□□□ 1.29
SHMT2-202ENST00000414700 RICTORQ6R327 1708 aa23.11■■□□□ 1.29
SHMT2-202ENST00000414700 DENND4BO75064 1496 aaPredicted RBP23.1■■□□□ 1.29
SHMT2-202ENST00000414700 KIF15Q9NS87 1388 aa23.09■■□□□ 1.29
SHMT2-202ENST00000414700 KDM5CP41229 1560 aa23.09■■□□□ 1.29
SHMT2-202ENST00000414700 INO80Q9ULG1 1556 aaPredicted RBP23.09■■□□□ 1.29
SHMT2-202ENST00000414700 PLXNC1O60486 1568 aa23.07■■□□□ 1.28
SHMT2-202ENST00000414700 ATP7AQ04656 1500 aa23.07■■□□□ 1.28
SHMT2-202ENST00000414700 FRMPD1Q5SYB0 1578 aa23.07■■□□□ 1.28
SHMT2-202ENST00000414700 KIDINS220Q9ULH0 1771 aa23.07■■□□□ 1.28
SHMT2-202ENST00000414700 COL17A1Q9UMD9 1497 aaPredicted RBP23.07■■□□□ 1.28
SHMT2-202ENST00000414700 RTEL1-TNFRSF6BF6WH68 1400 aa23.05■■□□□ 1.28
SHMT2-202ENST00000414700 MYT1LQ9UL68 1186 aa23.04■■□□□ 1.28
SHMT2-202ENST00000414700 ANKRD50Q9ULJ7 1429 aa23.03■■□□□ 1.28
SHMT2-202ENST00000414700 HECW2Q9P2P5 1572 aa23.02■■□□□ 1.28
SHMT2-202ENST00000414700 MLH3Q9UHC1 1453 aa23■■□□□ 1.27
SHMT2-202ENST00000414700 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
SHMT2-202ENST00000414700 DHX57Q6P158 1386 aaKnown RBP22.98■■□□□ 1.27
SHMT2-202ENST00000414700 DUOX2Q9NRD8 1548 aa22.97■■□□□ 1.27
SHMT2-202ENST00000414700 ABCA6Q8N139 1617 aa22.97■■□□□ 1.27
SHMT2-202ENST00000414700 YEATS2Q9ULM3 1422 aa22.95■■□□□ 1.26
SHMT2-202ENST00000414700 ZMYM4Q5VZL5 1548 aa22.95■■□□□ 1.26
SHMT2-202ENST00000414700 TRIM52Q96A61 297 aa22.93■■□□□ 1.26
SHMT2-202ENST00000414700 DIP2CQ9Y2E4 1556 aa22.92■■□□□ 1.26
SHMT2-202ENST00000414700 ERBINQ96RT1 1412 aa22.91■■□□□ 1.26
SHMT2-202ENST00000414700 DHX29Q7Z478 1369 aaKnown RBP22.89■■□□□ 1.25
SHMT2-202ENST00000414700 A2MP01023 1474 aa22.88■■□□□ 1.25
SHMT2-202ENST00000414700 MAGI2Q86UL8 1455 aa22.85■■□□□ 1.25
SHMT2-202ENST00000414700 PZPP20742 1482 aa22.84■■□□□ 1.25
SHMT2-202ENST00000414700 UNC13BO14795 1591 aa22.83■■□□□ 1.25
SHMT2-202ENST00000414700 NUP155O75694 1391 aa22.83■■□□□ 1.25
SHMT2-202ENST00000414700 KIF3BO15066 747 aa22.83■■□□□ 1.25
SHMT2-202ENST00000414700 ZEB1P37275 1124 aaPredicted RBP22.82■■□□□ 1.24
SHMT2-202ENST00000414700 MPHOSPH9Q99550 1183 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms