RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ADRA2BP18089 450 aa10.1□□□□□ -0.79
VPS41-204ENST00000413141 CAMSAP2Q08AD1 1489 aa10.1□□□□□ -0.79
VPS41-204ENST00000413141 MAPKBP1O60336 1514 aa10.09□□□□□ -0.79
VPS41-204ENST00000413141 DNMT1P26358 1616 aaKnown RBP10.08□□□□□ -0.8
VPS41-204ENST00000413141 ABCA9Q8IUA7 1624 aa10.08□□□□□ -0.8
VPS41-204ENST00000413141 CDC42BPBQ9Y5S2 1711 aa10.08□□□□□ -0.8
VPS41-204ENST00000413141 FAM50AQ14320 339 aaKnown RBP10.08□□□□□ -0.8
VPS41-204ENST00000413141 CROCC2H7BZ55 1655 aa10.06□□□□□ -0.8
VPS41-204ENST00000413141 SAMD9LQ8IVG5 1584 aa10.06□□□□□ -0.8
VPS41-204ENST00000413141 ARHGAP5Q13017 1502 aa10.06□□□□□ -0.8
VPS41-204ENST00000413141 ARAP3Q8WWN8 1544 aa10.06□□□□□ -0.8
VPS41-204ENST00000413141 CYB5RLQ6IPT4 315 aa10.05□□□□□ -0.8
VPS41-204ENST00000413141 NPM1P06748 294 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS41-204ENST00000413141 CFDP1Q9UEE9 299 aaPredicted RBP10.04□□□□□ -0.8
VPS41-204ENST00000413141 DAPK1P53355 1430 aa10.04□□□□□ -0.8
VPS41-204ENST00000413141 PTPRKQ15262 1439 aa10.04□□□□□ -0.8
VPS41-204ENST00000413141 PLCH2O75038 1416 aa10.03□□□□□ -0.8
VPS41-204ENST00000413141 ITGAEP38570 1179 aa10.03□□□□□ -0.8
VPS41-204ENST00000413141 ARHGEF5Q12774 1597 aa10.03□□□□□ -0.8
VPS41-204ENST00000413141 GCC2Q8IWJ2 1684 aa10.02□□□□□ -0.8
VPS41-204ENST00000413141 AKNAQ7Z591 1439 aa10.02□□□□□ -0.81
VPS41-204ENST00000413141 KCNH8Q96L42 1107 aa10.02□□□□□ -0.81
VPS41-204ENST00000413141 ADGBQ8N7X0 1667 aa10.02□□□□□ -0.81
VPS41-204ENST00000413141 ZNF644Q9H582 1327 aaPredicted RBP10.02□□□□□ -0.81
VPS41-204ENST00000413141 ABCC1P33527 1531 aa10.02□□□□□ -0.81
VPS41-204ENST00000413141 SYCP2Q9BX26 1530 aa10.02□□□□□ -0.81
VPS41-204ENST00000413141 ABCC5O15440 1437 aa10.01□□□□□ -0.81
VPS41-204ENST00000413141 SHANK2Q9UPX8 1470 aa10.01□□□□□ -0.81
VPS41-204ENST00000413141 DIP2BQ9P265 1576 aa10.01□□□□□ -0.81
VPS41-204ENST00000413141 HFM1A2PYH4 1435 aa10□□□□□ -0.81
VPS41-204ENST00000413141 PLEKHH2Q8IVE3 1493 aa10□□□□□ -0.81
VPS41-204ENST00000413141 GLI2P10070 1586 aa10□□□□□ -0.81
VPS41-204ENST00000413141 CFAP74Q9C0B2 1584 aa10□□□□□ -0.81
VPS41-204ENST00000413141 MAP3K4Q9Y6R4 1608 aa10□□□□□ -0.81
VPS41-204ENST00000413141 CCDC141Q6ZP82 1450 aa9.99□□□□□ -0.81
VPS41-204ENST00000413141 MBD5Q9P267 1494 aa9.99□□□□□ -0.81
VPS41-204ENST00000413141 ZNF777Q9ULD5 760 aaPredicted RBP9.99□□□□□ -0.81
VPS41-204ENST00000413141 SETD5Q9C0A6 1442 aa9.99□□□□□ -0.81
VPS41-204ENST00000413141 FANCAO15360 1455 aa9.98□□□□□ -0.81
VPS41-204ENST00000413141 ADGRL2O95490 1459 aa9.98□□□□□ -0.81
VPS41-204ENST00000413141 ROCK1Q13464 1354 aa9.98□□□□□ -0.81
VPS41-204ENST00000413141 KIAA1107Q9UPP5 1409 aa9.98□□□□□ -0.81
VPS41-204ENST00000413141 MAST1Q9Y2H9 1570 aa9.97□□□□□ -0.81
VPS41-204ENST00000413141 RAB3GAP2Q9H2M9 1393 aa9.97□□□□□ -0.81
VPS41-204ENST00000413141 NAIPQ13075 1403 aa9.97□□□□□ -0.81
VPS41-204ENST00000413141 ARHGEF12Q9NZN5 1544 aa9.97□□□□□ -0.81
VPS41-204ENST00000413141 C9orf84Q5VXU9 1444 aa9.96□□□□□ -0.82
VPS41-204ENST00000413141 CD109Q6YHK3 1445 aa9.96□□□□□ -0.82
VPS41-204ENST00000413141 EFCAB2Q5VUJ9 269 aa9.95□□□□□ -0.82
VPS41-204ENST00000413141 PLXNC1O60486 1568 aa9.95□□□□□ -0.82
VPS41-204ENST00000413141 KDM6BO15054 1643 aa9.94□□□□□ -0.82
VPS41-204ENST00000413141 ADGRL1O94910 1474 aa9.94□□□□□ -0.82
VPS41-204ENST00000413141 NCOA1Q15788 1441 aa9.93□□□□□ -0.82
VPS41-204ENST00000413141 CHIC2Q9UKJ5 165 aa9.93□□□□□ -0.82
VPS41-204ENST00000413141 KIF13AQ9H1H9 1805 aa9.93□□□□□ -0.82
VPS41-204ENST00000413141 PPRC1Q5VV67 1664 aaKnown RBP9.93□□□□□ -0.82
VPS41-204ENST00000413141 INO80Q9ULG1 1556 aaPredicted RBP9.92□□□□□ -0.82
VPS41-204ENST00000413141 ZFYVE16Q7Z3T8 1539 aa9.92□□□□□ -0.82
VPS41-204ENST00000413141 NEO1Q92859 1461 aa9.92□□□□□ -0.82
VPS41-204ENST00000413141 HNRNPMP52272 730 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS41-204ENST00000413141 TRAPPC8Q9Y2L5 1435 aa9.91□□□□□ -0.82
VPS41-204ENST00000413141 DHX57Q6P158 1386 aaKnown RBP9.91□□□□□ -0.82
VPS41-204ENST00000413141 ANKRD30AQ9BXX3 1397 aa9.91□□□□□ -0.82
VPS41-204ENST00000413141 RSPH4AQ5TD94 716 aa9.91□□□□□ -0.82
VPS41-204ENST00000413141 RRP7BPQ9NSQ0 103 aa9.91□□□□□ -0.82
VPS41-204ENST00000413141 KDM5CP41229 1560 aa9.9□□□□□ -0.82
VPS41-204ENST00000413141 HRCP23327 699 aa9.9□□□□□ -0.82
VPS41-204ENST00000413141 CCER1Q8TC90 406 aaPredicted RBP9.9□□□□□ -0.82
VPS41-204ENST00000413141 POGZQ7Z3K3 1410 aa9.9□□□□□ -0.83
VPS41-204ENST00000413141 SCAPERQ9BY12 1400 aa9.9□□□□□ -0.83
VPS41-204ENST00000413141 ATP7AQ04656 1500 aa9.89□□□□□ -0.83
VPS41-204ENST00000413141 ZNF518AQ6AHZ1 1483 aa9.89□□□□□ -0.83
VPS41-204ENST00000413141 KIF15Q9NS87 1388 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 TEX14Q8IWB6 1497 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 TSPY4P0CV99 314 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 TSPY10P0CW01 314 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 FAM69CQ0P6D2 419 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 DNAJC5Q9H3Z4 198 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 RTEL1-TNFRSF6BF6WH68 1400 aa9.88□□□□□ -0.83
VPS41-204ENST00000413141 ANKRD50Q9ULJ7 1429 aa9.87□□□□□ -0.83
VPS41-204ENST00000413141 FRMPD1Q5SYB0 1578 aa9.87□□□□□ -0.83
VPS41-204ENST00000413141 HECW2Q9P2P5 1572 aa9.87□□□□□ -0.83
VPS41-204ENST00000413141 RICTORQ6R327 1708 aa9.87□□□□□ -0.83
VPS41-204ENST00000413141 DUOX2Q9NRD8 1548 aa9.87□□□□□ -0.83
VPS41-204ENST00000413141 TSPOAP1O95153 1857 aa9.86□□□□□ -0.83
VPS41-204ENST00000413141 KIDINS220Q9ULH0 1771 aa9.86□□□□□ -0.83
VPS41-204ENST00000413141 UNC13BO14795 1591 aa9.85□□□□□ -0.83
VPS41-204ENST00000413141 ERBINQ96RT1 1412 aa9.85□□□□□ -0.83
VPS41-204ENST00000413141 KDM5DQ9BY66 1539 aa9.85□□□□□ -0.83
VPS41-204ENST00000413141 DENND4BO75064 1496 aaPredicted RBP9.85□□□□□ -0.83
VPS41-204ENST00000413141 SPAG9O60271 1321 aaKnown RBP9.84□□□□□ -0.83
VPS41-204ENST00000413141 CLSPNQ9HAW4 1339 aa9.84□□□□□ -0.83
VPS41-204ENST00000413141 AFAP1Q8N556 730 aa9.84□□□□□ -0.83
VPS41-204ENST00000413141 MLH3Q9UHC1 1453 aa9.84□□□□□ -0.83
VPS41-204ENST00000413141 ZMYM4Q5VZL5 1548 aa9.83□□□□□ -0.84
VPS41-204ENST00000413141 ABCA6Q8N139 1617 aa9.83□□□□□ -0.84
VPS41-204ENST00000413141 EIF2AK4Q9P2K8 1649 aaKnown RBP9.83□□□□□ -0.84
VPS41-204ENST00000413141 ZEB1P37275 1124 aaPredicted RBP9.83□□□□□ -0.84
VPS41-204ENST00000413141 MAGI2Q86UL8 1455 aa9.83□□□□□ -0.84
VPS41-204ENST00000413141 ACIN1Q9UKV3 1341 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms