RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 GORABQ5T7V8 394 aa10.81□□□□□ -0.68
SCN9A-203ENST00000409672 NOC3LQ8WTT2 800 aaKnown RBP10.81□□□□□ -0.68
SCN9A-203ENST00000409672 SUPT16HQ9Y5B9 1047 aaKnown RBP10.81□□□□□ -0.68
SCN9A-203ENST00000409672 B4GALNT3Q6L9W6 998 aa10.81□□□□□ -0.68
SCN9A-203ENST00000409672 CNKSR2Q8WXI2 1034 aa10.8□□□□□ -0.68
SCN9A-203ENST00000409672 MIER1Q8N108 512 aa10.8□□□□□ -0.68
SCN9A-203ENST00000409672 ZCCHC6Q5VYS8 1495 aaKnown RBP10.8□□□□□ -0.68
SCN9A-203ENST00000409672 HSP90B1P14625 803 aaKnown RBP10.79□□□□□ -0.68
SCN9A-203ENST00000409672 DCAF11Q8TEB1 546 aa10.79□□□□□ -0.68
SCN9A-203ENST00000409672 NGEFQ8N5V2 710 aa10.79□□□□□ -0.68
SCN9A-203ENST00000409672 PPP1R1BQ9UD71 204 aaPredicted RBP10.79□□□□□ -0.68
SCN9A-203ENST00000409672 EVA1CP58658 441 aa10.78□□□□□ -0.68
SCN9A-203ENST00000409672 NAP1L5Q96NT1 182 aaPredicted RBP10.78□□□□□ -0.68
SCN9A-203ENST00000409672 SYTL4Q96C24 671 aaPredicted RBP10.78□□□□□ -0.68
SCN9A-203ENST00000409672 GOLGA6L6A8MZA4 724 aa10.77□□□□□ -0.69
SCN9A-203ENST00000409672 DDRGK1Q96HY6 314 aa10.76□□□□□ -0.69
SCN9A-203ENST00000409672 TOMM22Q9NS69 142 aa10.76□□□□□ -0.69
SCN9A-203ENST00000409672 PNNQ9H307 717 aaKnown RBP10.76□□□□□ -0.69
SCN9A-203ENST00000409672 NOL8Q76FK4 1167 aaKnown RBP10.75□□□□□ -0.69
SCN9A-203ENST00000409672 CDCA8Q53HL2 280 aa10.75□□□□□ -0.69
SCN9A-203ENST00000409672 KIAA2012Q0VF49 1180 aa10.74□□□□□ -0.69
SCN9A-203ENST00000409672 MORC1Q86VD1 984 aa10.74□□□□□ -0.69
SCN9A-203ENST00000409672 FOXD1Q16676 465 aa10.74□□□□□ -0.69
SCN9A-203ENST00000409672 RASSF8Q8NHQ8 419 aa10.74□□□□□ -0.69
SCN9A-203ENST00000409672 HDGFP51858 240 aaKnown RBP10.74□□□□□ -0.69
SCN9A-203ENST00000409672 SLC4A10Q6U841 1118 aa10.74□□□□□ -0.69
SCN9A-203ENST00000409672 SIN3AQ96ST3 1273 aa10.73□□□□□ -0.69
SCN9A-203ENST00000409672 CWC22Q9HCG8 908 aaKnown RBP10.73□□□□□ -0.69
SCN9A-203ENST00000409672 MARCH6O60337 910 aa10.72□□□□□ -0.69
SCN9A-203ENST00000409672 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.72□□□□□ -0.693e-7■■■□□ 15
SCN9A-203ENST00000409672 NGDNQ8NEJ9 315 aaKnown RBP10.71□□□□□ -0.69
SCN9A-203ENST00000409672 TRIM6-TRIM34B2RNG4 842 aa10.71□□□□□ -0.7
SCN9A-203ENST00000409672 KIAA1211Q6ZU35 1233 aa10.7□□□□□ -0.7
SCN9A-203ENST00000409672 A0A0U1RQG5 324 aaPredicted RBP10.7□□□□□ -0.7
SCN9A-203ENST00000409672 L1TD1Q5T7N2 865 aaKnown RBP10.7□□□□□ -0.7
SCN9A-203ENST00000409672 KANK1Q14678 1352 aa10.7□□□□□ -0.7
SCN9A-203ENST00000409672 PES1O00541 588 aaKnown RBP10.69□□□□□ -0.7
SCN9A-203ENST00000409672 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
SCN9A-203ENST00000409672 DCAF8L1A6NGE4 600 aa10.68□□□□□ -0.7
SCN9A-203ENST00000409672 FOXD4L5Q5VV16 416 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-203ENST00000409672 FOXD4L4Q8WXT5 416 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-203ENST00000409672 MCCP23508 829 aa10.68□□□□□ -0.7
SCN9A-203ENST00000409672 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-203ENST00000409672 HDGFL2Q7Z4V5 671 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-203ENST00000409672 CTDP1Q9Y5B0 961 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-203ENST00000409672 GZF1Q9H116 711 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-203ENST00000409672 AMPHP49418 695 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 TRIM34Q9BYJ4 488 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 ITPRIPQ8IWB1 547 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 NECTIN2Q92692 538 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 HSCBQ8IWL3 235 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 TCEAL9Q9UHQ7 104 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 TMF1P82094 1093 aa10.66□□□□□ -0.7
SCN9A-203ENST00000409672 U2AF1L5P0DN76 240 aaPredicted RBP10.65□□□□□ -0.7
SCN9A-203ENST00000409672 U2AF1Q01081 240 aaKnown RBP eCLIP10.65□□□□□ -0.71e-8■□□□□ 11.3
SCN9A-203ENST00000409672 NRDCO43847 1150 aa10.65□□□□□ -0.7
SCN9A-203ENST00000409672 RSF1Q96T23 1441 aaPredicted RBP10.65□□□□□ -0.7
SCN9A-203ENST00000409672 EID1Q9Y6B2 187 aa10.64□□□□□ -0.71
SCN9A-203ENST00000409672 FOXD4L6Q3SYB3 417 aaPredicted RBP10.64□□□□□ -0.71
SCN9A-203ENST00000409672 FOXD4L3Q6VB84 417 aaPredicted RBP10.64□□□□□ -0.71
SCN9A-203ENST00000409672 CHAF1AQ13111 956 aaPredicted RBP10.63□□□□□ -0.71
SCN9A-203ENST00000409672 CCDC146Q8IYE0 955 aa10.63□□□□□ -0.71
SCN9A-203ENST00000409672 CLIP1P30622 1438 aa10.63□□□□□ -0.71
SCN9A-203ENST00000409672 SLC4A3P48751 1232 aa10.62□□□□□ -0.71
SCN9A-203ENST00000409672 CYB5RLQ6IPT4 315 aa10.62□□□□□ -0.71
SCN9A-203ENST00000409672 ZNF428Q96B54 188 aa10.61□□□□□ -0.71
SCN9A-203ENST00000409672 MTMR7Q9Y216 660 aa10.61□□□□□ -0.71
SCN9A-203ENST00000409672 CEP89Q96ST8 783 aa10.6□□□□□ -0.71
SCN9A-203ENST00000409672 USP35Q9P2H5 1018 aa10.6□□□□□ -0.71
SCN9A-203ENST00000409672 FYB1O15117 783 aa10.59□□□□□ -0.71
SCN9A-203ENST00000409672 SPAG9O60271 1321 aaKnown RBP10.59□□□□□ -0.71
SCN9A-203ENST00000409672 PATL2C9JE40 543 aaKnown RBP10.59□□□□□ -0.71
SCN9A-203ENST00000409672 KDM4AO75164 1064 aa10.59□□□□□ -0.71
SCN9A-203ENST00000409672 ANP32EQ9BTT0 268 aa10.59□□□□□ -0.71
SCN9A-203ENST00000409672 CCNB3Q8WWL7 1395 aa10.59□□□□□ -0.71
SCN9A-203ENST00000409672 DHX16O60231 1041 aaKnown RBP10.58□□□□□ -0.72
SCN9A-203ENST00000409672 MSNP26038 577 aaKnown RBP10.58□□□□□ -0.72
SCN9A-203ENST00000409672 FAM177BA6PVY3 158 aa10.58□□□□□ -0.72
SCN9A-203ENST00000409672 IBSPP21815 317 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-203ENST00000409672 ELL2O00472 640 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-203ENST00000409672 VPS37DQ86XT2 251 aa10.58□□□□□ -0.72
SCN9A-203ENST00000409672 CLUAP1Q96AJ1 413 aa10.58□□□□□ -0.72
SCN9A-203ENST00000409672 STK31Q9BXU1 1019 aa10.58□□□□□ -0.72
SCN9A-203ENST00000409672 KAT6BQ8WYB5 2073 aa10.57□□□□□ -0.72
SCN9A-203ENST00000409672 EIF2S2P20042 333 aaKnown RBP10.57□□□□□ -0.72
SCN9A-203ENST00000409672 GPATCH3Q96I76 525 aa10.57□□□□□ -0.72
SCN9A-203ENST00000409672 KIF3BO15066 747 aa10.57□□□□□ -0.72
SCN9A-203ENST00000409672 CHMP4BQ9H444 224 aaKnown RBP10.57□□□□□ -0.72
SCN9A-203ENST00000409672 PIP4K2BP78356 416 aa10.56□□□□□ -0.72
SCN9A-203ENST00000409672 NUTM2BA6NNL0 878 aaPredicted RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 NUTM2EB1AL46 878 aaPredicted RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 FOSBP53539 338 aa10.55□□□□□ -0.72
SCN9A-203ENST00000409672 MFAP1P55081 439 aaKnown RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 NUTM2AQ8IVF1 878 aaPredicted RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 SLKQ9H2G2 1235 aaPredicted RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 NUTM2GQ5VZR2 741 aa10.55□□□□□ -0.72
SCN9A-203ENST00000409672 RRP7AQ9Y3A4 280 aaKnown RBP10.55□□□□□ -0.72
SCN9A-203ENST00000409672 RILPL2Q969X0 211 aa10.55□□□□□ -0.72
SCN9A-203ENST00000409672 TRAK1Q9UPV9 953 aa10.55□□□□□ -0.72
SCN9A-203ENST00000409672 HNRNPMP52272 730 aaKnown RBP eCLIP10.55□□□□□ -0.724e-9■■■□□ 16.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms