RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 TSPOAP1O95153 1857 aa31.65■■■□□ 2.66
VSX1-203ENST00000409285 CD109Q6YHK3 1445 aa31.64■■■□□ 2.66
VSX1-203ENST00000409285 MIA2Q96PC5 1412 aa31.63■■■□□ 2.65
VSX1-203ENST00000409285 ARHGAP5Q13017 1502 aa31.6■■■□□ 2.65
VSX1-203ENST00000409285 FGD6Q6ZV73 1430 aa31.59■■■□□ 2.65
VSX1-203ENST00000409285 PTPN23Q9H3S7 1636 aa31.57■■■□□ 2.64
VSX1-203ENST00000409285 SAMD9LQ8IVG5 1584 aa31.55■■■□□ 2.64
VSX1-203ENST00000409285 RRBP1Q9P2E9 1410 aaKnown RBP31.54■■■□□ 2.64
VSX1-203ENST00000409285 FANCAO15360 1455 aa31.54■■■□□ 2.64
VSX1-203ENST00000409285 TEX14Q8IWB6 1497 aa31.54■■■□□ 2.64
VSX1-203ENST00000409285 TCOF1Q13428 1488 aaKnown RBP31.52■■■□□ 2.64
VSX1-203ENST00000409285 NEO1Q92859 1461 aa31.52■■■□□ 2.64
VSX1-203ENST00000409285 CFDP1Q9UEE9 299 aaPredicted RBP31.49■■■□□ 2.63
VSX1-203ENST00000409285 ABCC1P33527 1531 aa31.48■■■□□ 2.63
VSX1-203ENST00000409285 CAMSAP2Q08AD1 1489 aa31.48■■■□□ 2.63
VSX1-203ENST00000409285 PLEKHH2Q8IVE3 1493 aa31.46■■■□□ 2.63
VSX1-203ENST00000409285 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.45■■■□□ 2.63
VSX1-203ENST00000409285 EFCAB2Q5VUJ9 269 aa31.45■■■□□ 2.62
VSX1-203ENST00000409285 KIAA1107Q9UPP5 1409 aa31.41■■■□□ 2.62
VSX1-203ENST00000409285 ARHGEF5Q12774 1597 aa31.41■■■□□ 2.62
VSX1-203ENST00000409285 AKNAQ7Z591 1439 aa31.4■■■□□ 2.62
VSX1-203ENST00000409285 CROCC2H7BZ55 1655 aa31.39■■■□□ 2.62
VSX1-203ENST00000409285 SYCP2Q9BX26 1530 aa31.39■■■□□ 2.62
VSX1-203ENST00000409285 DNMT1P26358 1616 aaKnown RBP31.38■■■□□ 2.61
VSX1-203ENST00000409285 ADGRL1O94910 1474 aa31.37■■■□□ 2.61
VSX1-203ENST00000409285 RICTORQ6R327 1708 aa31.35■■■□□ 2.61
VSX1-203ENST00000409285 MBD5Q9P267 1494 aa31.34■■■□□ 2.61
VSX1-203ENST00000409285 ARHGEF12Q9NZN5 1544 aa31.33■■■□□ 2.61
VSX1-203ENST00000409285 ZNF644Q9H582 1327 aaPredicted RBP31.33■■■□□ 2.61
VSX1-203ENST00000409285 ZNF777Q9ULD5 760 aaPredicted RBP31.31■■■□□ 2.6
VSX1-203ENST00000409285 CCDC141Q6ZP82 1450 aa31.27■■■□□ 2.6
VSX1-203ENST00000409285 KDM5CP41229 1560 aa31.27■■■□□ 2.6
VSX1-203ENST00000409285 SCAPERQ9BY12 1400 aa31.26■■■□□ 2.59
VSX1-203ENST00000409285 FRMPD1Q5SYB0 1578 aa31.26■■■□□ 2.59
VSX1-203ENST00000409285 ZNF518AQ6AHZ1 1483 aa31.26■■■□□ 2.59
VSX1-203ENST00000409285 POGZQ7Z3K3 1410 aa31.25■■■□□ 2.59
VSX1-203ENST00000409285 KDM6BO15054 1643 aa31.25■■■□□ 2.59
VSX1-203ENST00000409285 SHANK2Q9UPX8 1470 aa31.24■■■□□ 2.59
VSX1-203ENST00000409285 MAST1Q9Y2H9 1570 aa31.24■■■□□ 2.59
VSX1-203ENST00000409285 ADGBQ8N7X0 1667 aa31.23■■■□□ 2.59
VSX1-203ENST00000409285 DENND4BO75064 1496 aaPredicted RBP31.23■■■□□ 2.59
VSX1-203ENST00000409285 FAM50AQ14320 339 aaKnown RBP31.23■■■□□ 2.59
VSX1-203ENST00000409285 DAPK1P53355 1430 aa31.23■■■□□ 2.59
VSX1-203ENST00000409285 RSPH4AQ5TD94 716 aa31.22■■■□□ 2.59
VSX1-203ENST00000409285 ZMYM4Q5VZL5 1548 aa31.21■■■□□ 2.59
VSX1-203ENST00000409285 ABCC5O15440 1437 aa31.2■■■□□ 2.59
VSX1-203ENST00000409285 TRAPPC8Q9Y2L5 1435 aa31.2■■■□□ 2.59
VSX1-203ENST00000409285 INO80Q9ULG1 1556 aaPredicted RBP31.2■■■□□ 2.58
VSX1-203ENST00000409285 HNRNPMP52272 730 aaKnown RBP eCLIP31.17■■■□□ 2.58
VSX1-203ENST00000409285 TRIM26Q12899 539 aaPredicted RBP31.16■■■□□ 2.58
VSX1-203ENST00000409285 HECW2Q9P2P5 1572 aa31.16■■■□□ 2.58
VSX1-203ENST00000409285 COL17A1Q9UMD9 1497 aaPredicted RBP31.15■■■□□ 2.58
VSX1-203ENST00000409285 ZFYVE16Q7Z3T8 1539 aa31.14■■■□□ 2.58
VSX1-203ENST00000409285 KIDINS220Q9ULH0 1771 aa31.14■■■□□ 2.58
VSX1-203ENST00000409285 PLXNC1O60486 1568 aa31.13■■■□□ 2.57
VSX1-203ENST00000409285 C9orf84Q5VXU9 1444 aa31.11■■■□□ 2.57
VSX1-203ENST00000409285 ADGRL2O95490 1459 aa31.11■■■□□ 2.57
VSX1-203ENST00000409285 MLH3Q9UHC1 1453 aa31.11■■■□□ 2.57
VSX1-203ENST00000409285 ATP7AQ04656 1500 aa31.11■■■□□ 2.57
VSX1-203ENST00000409285 PTPRKQ15262 1439 aa31.1■■■□□ 2.57
VSX1-203ENST00000409285 RTEL1-TNFRSF6BF6WH68 1400 aa31.09■■■□□ 2.57
VSX1-203ENST00000409285 MAGI2Q86UL8 1455 aa31.07■■■□□ 2.56
VSX1-203ENST00000409285 AFAP1Q8N556 730 aa31.06■■■□□ 2.56
VSX1-203ENST00000409285 ROCK1Q13464 1354 aa31.04■■■□□ 2.56
VSX1-203ENST00000409285 GCC2Q8IWJ2 1684 aa31.04■■■□□ 2.56
VSX1-203ENST00000409285 RAPGEF3O95398 923 aa31.03■■■□□ 2.56
VSX1-203ENST00000409285 TSPY4P0CV99 314 aa31.03■■■□□ 2.56
VSX1-203ENST00000409285 TSPY10P0CW01 314 aa31.03■■■□□ 2.56
VSX1-203ENST00000409285 ABCA6Q8N139 1617 aa31.02■■■□□ 2.56
VSX1-203ENST00000409285 SPAG9O60271 1321 aaKnown RBP31.01■■■□□ 2.55
VSX1-203ENST00000409285 ARHGEF40Q8TER5 1519 aa31■■■□□ 2.55
VSX1-203ENST00000409285 DIP2CQ9Y2E4 1556 aa30.99■■■□□ 2.55
VSX1-203ENST00000409285 NCOA1Q15788 1441 aa30.98■■■□□ 2.55
VSX1-203ENST00000409285 ANKRD30AQ9BXX3 1397 aa30.96■■■□□ 2.55
VSX1-203ENST00000409285 ITGAEP38570 1179 aa30.96■■■□□ 2.55
VSX1-203ENST00000409285 REREQ9P2R6 1566 aa30.94■■■□□ 2.54
VSX1-203ENST00000409285 HFM1A2PYH4 1435 aa30.93■■■□□ 2.54
VSX1-203ENST00000409285 DUOX2Q9NRD8 1548 aa30.91■■■□□ 2.54
VSX1-203ENST00000409285 BCORL1Q5H9F3 1711 aa30.89■■■□□ 2.54
VSX1-203ENST00000409285 EIF2AK4Q9P2K8 1649 aaKnown RBP30.89■■■□□ 2.53
VSX1-203ENST00000409285 CHIC2Q9UKJ5 165 aa30.89■■■□□ 2.53
VSX1-203ENST00000409285 YEATS2Q9ULM3 1422 aa30.88■■■□□ 2.53
VSX1-203ENST00000409285 KIF15Q9NS87 1388 aa30.88■■■□□ 2.53
VSX1-203ENST00000409285 NAIPQ13075 1403 aa30.87■■■□□ 2.53
VSX1-203ENST00000409285 ATP10AO60312 1499 aa30.83■■■□□ 2.53
VSX1-203ENST00000409285 ERBINQ96RT1 1412 aa30.83■■■□□ 2.53
VSX1-203ENST00000409285 A2MP01023 1474 aa30.82■■■□□ 2.52
VSX1-203ENST00000409285 SIGLEC1Q9BZZ2 1709 aa30.79■■■□□ 2.52
VSX1-203ENST00000409285 MYT1LQ9UL68 1186 aa30.78■■■□□ 2.52
VSX1-203ENST00000409285 DHX29Q7Z478 1369 aaKnown RBP30.78■■■□□ 2.52
VSX1-203ENST00000409285 ANKRD50Q9ULJ7 1429 aa30.77■■■□□ 2.52
VSX1-203ENST00000409285 PCGF6Q9BYE7 350 aa30.77■■■□□ 2.52
VSX1-203ENST00000409285 RRP7BPQ9NSQ0 103 aa30.77■■■□□ 2.52
VSX1-203ENST00000409285 AGLP35573 1532 aa30.77■■■□□ 2.52
VSX1-203ENST00000409285 DEPDC5O75140 1603 aa30.76■■■□□ 2.52
VSX1-203ENST00000409285 SETD5Q9C0A6 1442 aa30.76■■■□□ 2.51
VSX1-203ENST00000409285 RNF17Q9BXT8 1623 aaKnown RBP30.75■■■□□ 2.51
VSX1-203ENST00000409285 UNC13BO14795 1591 aa30.73■■■□□ 2.51
VSX1-203ENST00000409285 RAB3GAP2Q9H2M9 1393 aa30.66■■■□□ 2.5
VSX1-203ENST00000409285 PRDM15P57071 1507 aaPredicted RBP30.66■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms