RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 ARHGAP5Q13017 1502 aa32.05■■■□□ 2.72
CPNE1-204ENST00000397443 TCOF1Q13428 1488 aaKnown RBP32.04■■■□□ 2.72
CPNE1-204ENST00000397443 ABCA9Q8IUA7 1624 aa32.03■■■□□ 2.72
CPNE1-204ENST00000397443 CAMSAP2Q08AD1 1489 aa32.02■■■□□ 2.72
CPNE1-204ENST00000397443 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.01■■■□□ 2.717e-10■■□□□ 13.2
CPNE1-204ENST00000397443 PLCH2O75038 1416 aa32■■■□□ 2.71
CPNE1-204ENST00000397443 FAM69CQ0P6D2 419 aa31.95■■■□□ 2.71
CPNE1-204ENST00000397443 CD109Q6YHK3 1445 aa31.94■■■□□ 2.7
CPNE1-204ENST00000397443 EFCAB2Q5VUJ9 269 aa31.93■■■□□ 2.7
CPNE1-204ENST00000397443 SAMD9LQ8IVG5 1584 aa31.92■■■□□ 2.7
CPNE1-204ENST00000397443 HNRNPMP52272 730 aaKnown RBP eCLIP31.9■■■□□ 2.71e-7■■■■□ 25.4
CPNE1-204ENST00000397443 DIP2BQ9P265 1576 aa31.9■■■□□ 2.7
CPNE1-204ENST00000397443 PTPRKQ15262 1439 aa31.89■■■□□ 2.7
CPNE1-204ENST00000397443 CHIC2Q9UKJ5 165 aa31.89■■■□□ 2.7
CPNE1-204ENST00000397443 FANCAO15360 1455 aa31.87■■■□□ 2.69
CPNE1-204ENST00000397443 DAPK1P53355 1430 aa31.85■■■□□ 2.69
CPNE1-204ENST00000397443 ARAP3Q8WWN8 1544 aa31.84■■■□□ 2.69
CPNE1-204ENST00000397443 DNMT1P26358 1616 aaKnown RBP31.84■■■□□ 2.69
CPNE1-204ENST00000397443 SYCP2Q9BX26 1530 aa31.84■■■□□ 2.69
CPNE1-204ENST00000397443 ABCC5O15440 1437 aa31.84■■■□□ 2.69
CPNE1-204ENST00000397443 GLI2P10070 1586 aa31.83■■■□□ 2.69
CPNE1-204ENST00000397443 MAP3K4Q9Y6R4 1608 aa31.81■■■□□ 2.68
CPNE1-204ENST00000397443 MBD5Q9P267 1494 aa31.78■■■□□ 2.68
CPNE1-204ENST00000397443 TSPOAP1O95153 1857 aa31.77■■■□□ 2.68
CPNE1-204ENST00000397443 PLEKHH2Q8IVE3 1493 aa31.77■■■□□ 2.68
CPNE1-204ENST00000397443 ARHGEF12Q9NZN5 1544 aa31.77■■■□□ 2.68
CPNE1-204ENST00000397443 KIF13AQ9H1H9 1805 aa31.76■■■□□ 2.68
CPNE1-204ENST00000397443 ABCC1P33527 1531 aa31.75■■■□□ 2.67
CPNE1-204ENST00000397443 RRP7BPQ9NSQ0 103 aa31.75■■■□□ 2.67
CPNE1-204ENST00000397443 AKNAQ7Z591 1439 aa31.73■■■□□ 2.67
CPNE1-204ENST00000397443 KIAA1107Q9UPP5 1409 aa31.73■■■□□ 2.67
CPNE1-204ENST00000397443 ADGRL1O94910 1474 aa31.73■■■□□ 2.67
CPNE1-204ENST00000397443 ARHGEF5Q12774 1597 aa31.72■■■□□ 2.67
CPNE1-204ENST00000397443 CCDC141Q6ZP82 1450 aa31.72■■■□□ 2.67
CPNE1-204ENST00000397443 TSPY4P0CV99 314 aa31.71■■■□□ 2.67
CPNE1-204ENST00000397443 TSPY10P0CW01 314 aa31.71■■■□□ 2.67
CPNE1-204ENST00000397443 CROCC2H7BZ55 1655 aa31.71■■■□□ 2.67
CPNE1-204ENST00000397443 SCAPERQ9BY12 1400 aa31.69■■■□□ 2.66
CPNE1-204ENST00000397443 TRAPPC8Q9Y2L5 1435 aa31.69■■■□□ 2.66
CPNE1-204ENST00000397443 CFAP74Q9C0B2 1584 aa31.68■■■□□ 2.66
CPNE1-204ENST00000397443 TRHP20396 242 aaPredicted RBP31.67■■■□□ 2.66
CPNE1-204ENST00000397443 C9orf84Q5VXU9 1444 aa31.67■■■□□ 2.66
CPNE1-204ENST00000397443 RSPH4AQ5TD94 716 aa31.67■■■□□ 2.66
CPNE1-204ENST00000397443 AFAP1Q8N556 730 aa31.66■■■□□ 2.66
CPNE1-204ENST00000397443 SETD5Q9C0A6 1442 aa31.65■■■□□ 2.66
CPNE1-204ENST00000397443 NEO1Q92859 1461 aa31.63■■■□□ 2.65
CPNE1-204ENST00000397443 RAB3GAP2Q9H2M9 1393 aa31.62■■■□□ 2.65
CPNE1-204ENST00000397443 HFM1A2PYH4 1435 aa31.62■■■□□ 2.65
CPNE1-204ENST00000397443 PPRC1Q5VV67 1664 aaKnown RBP31.62■■■□□ 2.65
CPNE1-204ENST00000397443 SHANK2Q9UPX8 1470 aa31.62■■■□□ 2.65
CPNE1-204ENST00000397443 NAIPQ13075 1403 aa31.61■■■□□ 2.65
CPNE1-204ENST00000397443 ADGBQ8N7X0 1667 aa31.6■■■□□ 2.65
CPNE1-204ENST00000397443 ROCK1Q13464 1354 aa31.59■■■□□ 2.65
CPNE1-204ENST00000397443 ANKRD30AQ9BXX3 1397 aa31.58■■■□□ 2.65
CPNE1-204ENST00000397443 NCOA1Q15788 1441 aa31.57■■■□□ 2.65
CPNE1-204ENST00000397443 MYT1LQ9UL68 1186 aa31.57■■■□□ 2.64
CPNE1-204ENST00000397443 TEX14Q8IWB6 1497 aa31.56■■■□□ 2.64
CPNE1-204ENST00000397443 SPAG9O60271 1321 aaKnown RBP31.55■■■□□ 2.64
CPNE1-204ENST00000397443 ADGRL2O95490 1459 aa31.55■■■□□ 2.64
CPNE1-204ENST00000397443 RAPGEF3O95398 923 aa31.53■■■□□ 2.64
CPNE1-204ENST00000397443 GCC2Q8IWJ2 1684 aa31.53■■■□□ 2.64
CPNE1-204ENST00000397443 POGZQ7Z3K3 1410 aa31.5■■■□□ 2.63
CPNE1-204ENST00000397443 DENND4BO75064 1496 aaPredicted RBP31.5■■■□□ 2.63
CPNE1-204ENST00000397443 ZNF518AQ6AHZ1 1483 aa31.5■■■□□ 2.63
CPNE1-204ENST00000397443 MAST1Q9Y2H9 1570 aa31.5■■■□□ 2.63
CPNE1-204ENST00000397443 KIF15Q9NS87 1388 aa31.49■■■□□ 2.63
CPNE1-204ENST00000397443 KDM6BO15054 1643 aa31.49■■■□□ 2.63
CPNE1-204ENST00000397443 CCER1Q8TC90 406 aaPredicted RBP31.47■■■□□ 2.63
CPNE1-204ENST00000397443 ZFYVE16Q7Z3T8 1539 aa31.44■■■□□ 2.62
CPNE1-204ENST00000397443 ATP7AQ04656 1500 aa31.43■■■□□ 2.62
CPNE1-204ENST00000397443 RTEL1-TNFRSF6BF6WH68 1400 aa31.4■■■□□ 2.62
CPNE1-204ENST00000397443 ANKRD50Q9ULJ7 1429 aa31.4■■■□□ 2.62
CPNE1-204ENST00000397443 PLXNC1O60486 1568 aa31.4■■■□□ 2.62
CPNE1-204ENST00000397443 INO80Q9ULG1 1556 aaPredicted RBP31.4■■■□□ 2.62
CPNE1-204ENST00000397443 RICTORQ6R327 1708 aa31.4■■■□□ 2.62
CPNE1-204ENST00000397443 KDM5CP41229 1560 aa31.39■■■□□ 2.62
CPNE1-204ENST00000397443 TRIM52Q96A61 297 aa31.38■■■□□ 2.61
CPNE1-204ENST00000397443 HRCP23327 699 aa31.37■■■□□ 2.61
CPNE1-204ENST00000397443 KIDINS220Q9ULH0 1771 aa31.36■■■□□ 2.61
CPNE1-204ENST00000397443 FRMPD1Q5SYB0 1578 aa31.35■■■□□ 2.61
CPNE1-204ENST00000397443 HECW2Q9P2P5 1572 aa31.35■■■□□ 2.61
CPNE1-204ENST00000397443 COL17A1Q9UMD9 1497 aaPredicted RBP31.33■■■□□ 2.61
CPNE1-204ENST00000397443 DHX57Q6P158 1386 aaKnown RBP31.33■■■□□ 2.61
CPNE1-204ENST00000397443 MLH3Q9UHC1 1453 aa31.31■■■□□ 2.6
CPNE1-204ENST00000397443 DUOX2Q9NRD8 1548 aa31.31■■■□□ 2.6
CPNE1-204ENST00000397443 YEATS2Q9ULM3 1422 aa31.24■■■□□ 2.59
CPNE1-204ENST00000397443 ABCA6Q8N139 1617 aa31.24■■■□□ 2.59
CPNE1-204ENST00000397443 ERBINQ96RT1 1412 aa31.23■■■□□ 2.59
CPNE1-204ENST00000397443 ZMYM4Q5VZL5 1548 aa31.21■■■□□ 2.59
CPNE1-204ENST00000397443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.21■■■□□ 2.599e-9■□□□□ 10.7
CPNE1-204ENST00000397443 DHX29Q7Z478 1369 aaKnown RBP31.19■■■□□ 2.58
CPNE1-204ENST00000397443 A2MP01023 1474 aa31.19■■■□□ 2.58
CPNE1-204ENST00000397443 DIP2CQ9Y2E4 1556 aa31.18■■■□□ 2.58
CPNE1-204ENST00000397443 NUP155O75694 1391 aa31.18■■■□□ 2.58
CPNE1-204ENST00000397443 KIF3BO15066 747 aa31.16■■■□□ 2.58
CPNE1-204ENST00000397443 MPHOSPH9Q99550 1183 aa31.14■■■□□ 2.58
CPNE1-204ENST00000397443 SLC4A1APQ9BWU0 796 aaKnown RBP31.14■■■□□ 2.57
CPNE1-204ENST00000397443 MAGI2Q86UL8 1455 aa31.12■■■□□ 2.57
CPNE1-204ENST00000397443 ACIN1Q9UKV3 1341 aaKnown RBP31.12■■■□□ 2.57
CPNE1-204ENST00000397443 PZPP20742 1482 aa31.09■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms