RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 MAP3K4Q9Y6R4 1608 aa22.63■■□□□ 1.21
TM9SF1-202ENST00000396854 PTPN23Q9H3S7 1636 aa22.63■■□□□ 1.21
TM9SF1-202ENST00000396854 PLCH2O75038 1416 aa22.61■■□□□ 1.21
TM9SF1-202ENST00000396854 TCOF1Q13428 1488 aaKnown RBP22.6■■□□□ 1.21
TM9SF1-202ENST00000396854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.57■■□□□ 1.2
TM9SF1-202ENST00000396854 ARHGAP5Q13017 1502 aa22.57■■□□□ 1.2
TM9SF1-202ENST00000396854 CD109Q6YHK3 1445 aa22.55■■□□□ 1.2
TM9SF1-202ENST00000396854 CFDP1Q9UEE9 299 aaPredicted RBP22.55■■□□□ 1.2
TM9SF1-202ENST00000396854 SAMD9LQ8IVG5 1584 aa22.54■■□□□ 1.2
TM9SF1-202ENST00000396854 CAMSAP2Q08AD1 1489 aa22.54■■□□□ 1.2
TM9SF1-202ENST00000396854 CFAP74Q9C0B2 1584 aa22.53■■□□□ 1.2
TM9SF1-202ENST00000396854 FAM69CQ0P6D2 419 aa22.51■■□□□ 1.19
TM9SF1-202ENST00000396854 PPRC1Q5VV67 1664 aaKnown RBP22.51■■□□□ 1.19
TM9SF1-202ENST00000396854 FANCAO15360 1455 aa22.49■■□□□ 1.19
TM9SF1-202ENST00000396854 TSPOAP1O95153 1857 aa22.47■■□□□ 1.19
TM9SF1-202ENST00000396854 EFCAB2Q5VUJ9 269 aa22.47■■□□□ 1.19
TM9SF1-202ENST00000396854 ABCC1P33527 1531 aa22.47■■□□□ 1.19
TM9SF1-202ENST00000396854 PLEKHH2Q8IVE3 1493 aa22.47■■□□□ 1.19
TM9SF1-202ENST00000396854 DNMT1P26358 1616 aaKnown RBP22.47■■□□□ 1.19
TM9SF1-202ENST00000396854 ZEB1P37275 1124 aaPredicted RBP22.46■■□□□ 1.19
TM9SF1-202ENST00000396854 FAM50AQ14320 339 aaKnown RBP22.46■■□□□ 1.19
TM9SF1-202ENST00000396854 ZNF644Q9H582 1327 aaPredicted RBP22.46■■□□□ 1.19
TM9SF1-202ENST00000396854 ARHGEF5Q12774 1597 aa22.45■■□□□ 1.18
TM9SF1-202ENST00000396854 KIAA1107Q9UPP5 1409 aa22.44■■□□□ 1.18
TM9SF1-202ENST00000396854 NEO1Q92859 1461 aa22.44■■□□□ 1.18
TM9SF1-202ENST00000396854 ZNF777Q9ULD5 760 aaPredicted RBP22.44■■□□□ 1.18
TM9SF1-202ENST00000396854 CROCC2H7BZ55 1655 aa22.44■■□□□ 1.18
TM9SF1-202ENST00000396854 SYCP2Q9BX26 1530 aa22.43■■□□□ 1.18
TM9SF1-202ENST00000396854 TEX14Q8IWB6 1497 aa22.41■■□□□ 1.18
TM9SF1-202ENST00000396854 MBD5Q9P267 1494 aa22.41■■□□□ 1.18
TM9SF1-202ENST00000396854 AKNAQ7Z591 1439 aa22.4■■□□□ 1.18
TM9SF1-202ENST00000396854 ARHGEF12Q9NZN5 1544 aa22.39■■□□□ 1.17
TM9SF1-202ENST00000396854 ADGRL1O94910 1474 aa22.39■■□□□ 1.17
TM9SF1-202ENST00000396854 DAPK1P53355 1430 aa22.39■■□□□ 1.17
TM9SF1-202ENST00000396854 ABCC5O15440 1437 aa22.37■■□□□ 1.17
TM9SF1-202ENST00000396854 CCDC141Q6ZP82 1450 aa22.36■■□□□ 1.17
TM9SF1-202ENST00000396854 SHANK2Q9UPX8 1470 aa22.35■■□□□ 1.17
TM9SF1-202ENST00000396854 PTPRKQ15262 1439 aa22.34■■□□□ 1.17
TM9SF1-202ENST00000396854 ADGBQ8N7X0 1667 aa22.34■■□□□ 1.17
TM9SF1-202ENST00000396854 RSPH4AQ5TD94 716 aa22.34■■□□□ 1.17
TM9SF1-202ENST00000396854 HNRNPMP52272 730 aaKnown RBP eCLIP22.33■■□□□ 1.17
TM9SF1-202ENST00000396854 MAST1Q9Y2H9 1570 aa22.32■■□□□ 1.16
TM9SF1-202ENST00000396854 SCAPERQ9BY12 1400 aa22.32■■□□□ 1.16
TM9SF1-202ENST00000396854 TRHP20396 242 aaPredicted RBP22.3■■□□□ 1.16
TM9SF1-202ENST00000396854 ITGAEP38570 1179 aa22.3■■□□□ 1.16
TM9SF1-202ENST00000396854 TRAPPC8Q9Y2L5 1435 aa22.3■■□□□ 1.16
TM9SF1-202ENST00000396854 RICTORQ6R327 1708 aa22.3■■□□□ 1.16
TM9SF1-202ENST00000396854 POGZQ7Z3K3 1410 aa22.28■■□□□ 1.16
TM9SF1-202ENST00000396854 ZNF518AQ6AHZ1 1483 aa22.28■■□□□ 1.16
TM9SF1-202ENST00000396854 KDM5CP41229 1560 aa22.28■■□□□ 1.16
TM9SF1-202ENST00000396854 ADGRL2O95490 1459 aa22.28■■□□□ 1.16
TM9SF1-202ENST00000396854 C9orf84Q5VXU9 1444 aa22.27■■□□□ 1.15
TM9SF1-202ENST00000396854 DENND4BO75064 1496 aaPredicted RBP22.27■■□□□ 1.15
TM9SF1-202ENST00000396854 ROCK1Q13464 1354 aa22.25■■□□□ 1.15
TM9SF1-202ENST00000396854 GCC2Q8IWJ2 1684 aa22.25■■□□□ 1.15
TM9SF1-202ENST00000396854 INO80Q9ULG1 1556 aaPredicted RBP22.25■■□□□ 1.15
TM9SF1-202ENST00000396854 FRMPD1Q5SYB0 1578 aa22.24■■□□□ 1.15
TM9SF1-202ENST00000396854 PLXNC1O60486 1568 aa22.23■■□□□ 1.15
TM9SF1-202ENST00000396854 TSPY4P0CV99 314 aa22.23■■□□□ 1.15
TM9SF1-202ENST00000396854 TSPY10P0CW01 314 aa22.23■■□□□ 1.15
TM9SF1-202ENST00000396854 ZFYVE16Q7Z3T8 1539 aa22.23■■□□□ 1.15
TM9SF1-202ENST00000396854 RTEL1-TNFRSF6BF6WH68 1400 aa22.22■■□□□ 1.15
TM9SF1-202ENST00000396854 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
TM9SF1-202ENST00000396854 AFAP1Q8N556 730 aa22.21■■□□□ 1.15
TM9SF1-202ENST00000396854 HFM1A2PYH4 1435 aa22.21■■□□□ 1.15
TM9SF1-202ENST00000396854 ATP7AQ04656 1500 aa22.2■■□□□ 1.14
TM9SF1-202ENST00000396854 KIDINS220Q9ULH0 1771 aa22.2■■□□□ 1.14
TM9SF1-202ENST00000396854 NCOA1Q15788 1441 aa22.2■■□□□ 1.14
TM9SF1-202ENST00000396854 ZMYM4Q5VZL5 1548 aa22.2■■□□□ 1.14
TM9SF1-202ENST00000396854 CHIC2Q9UKJ5 165 aa22.19■■□□□ 1.14
TM9SF1-202ENST00000396854 ANKRD30AQ9BXX3 1397 aa22.18■■□□□ 1.14
TM9SF1-202ENST00000396854 MLH3Q9UHC1 1453 aa22.18■■□□□ 1.14
TM9SF1-202ENST00000396854 NAIPQ13075 1403 aa22.17■■□□□ 1.14
TM9SF1-202ENST00000396854 SPAG9O60271 1321 aaKnown RBP22.17■■□□□ 1.14
TM9SF1-202ENST00000396854 COL17A1Q9UMD9 1497 aaPredicted RBP22.16■■□□□ 1.14
TM9SF1-202ENST00000396854 RAPGEF3O95398 923 aa22.15■■□□□ 1.14
TM9SF1-202ENST00000396854 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.13
TM9SF1-202ENST00000396854 KDM6BO15054 1643 aa22.13■■□□□ 1.13
TM9SF1-202ENST00000396854 RRP7BPQ9NSQ0 103 aa22.12■■□□□ 1.13
TM9SF1-202ENST00000396854 KIF15Q9NS87 1388 aa22.11■■□□□ 1.13
TM9SF1-202ENST00000396854 MAGI2Q86UL8 1455 aa22.11■■□□□ 1.13
TM9SF1-202ENST00000396854 ABCA6Q8N139 1617 aa22.11■■□□□ 1.13
TM9SF1-202ENST00000396854 DUOX2Q9NRD8 1548 aa22.1■■□□□ 1.13
TM9SF1-202ENST00000396854 DIP2CQ9Y2E4 1556 aa22.08■■□□□ 1.13
TM9SF1-202ENST00000396854 RAB3GAP2Q9H2M9 1393 aa22.08■■□□□ 1.12
TM9SF1-202ENST00000396854 ANKRD50Q9ULJ7 1429 aa22.06■■□□□ 1.12
TM9SF1-202ENST00000396854 ERBINQ96RT1 1412 aa22.05■■□□□ 1.12
TM9SF1-202ENST00000396854 ARHGEF40Q8TER5 1519 aa22.04■■□□□ 1.12
TM9SF1-202ENST00000396854 EIF2AK4Q9P2K8 1649 aaKnown RBP22.03■■□□□ 1.12
TM9SF1-202ENST00000396854 YEATS2Q9ULM3 1422 aa22.02■■□□□ 1.12
TM9SF1-202ENST00000396854 MYT1LQ9UL68 1186 aa22.02■■□□□ 1.12
TM9SF1-202ENST00000396854 REREQ9P2R6 1566 aa22.01■■□□□ 1.11
TM9SF1-202ENST00000396854 A2MP01023 1474 aa22.01■■□□□ 1.11
TM9SF1-202ENST00000396854 BCORL1Q5H9F3 1711 aa22■■□□□ 1.11
TM9SF1-202ENST00000396854 DHX29Q7Z478 1369 aaKnown RBP21.99■■□□□ 1.11
TM9SF1-202ENST00000396854 UNC13BO14795 1591 aa21.98■■□□□ 1.11
TM9SF1-202ENST00000396854 ATP10AO60312 1499 aa21.97■■□□□ 1.11
TM9SF1-202ENST00000396854 ACIN1Q9UKV3 1341 aaKnown RBP21.97■■□□□ 1.11
TM9SF1-202ENST00000396854 DEPDC5O75140 1603 aa21.97■■□□□ 1.11
TM9SF1-202ENST00000396854 RNF17Q9BXT8 1623 aaKnown RBP21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms