RNA–Protein interactions for RNA: ENST00000395793.7

CXCL12-204, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5 BASIC

Gene CXCL12, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-204ENST00000395793 YEATS2Q9ULM3 1422 aa29.48■■■□□ 2.31
CXCL12-204ENST00000395793 MADDQ8WXG6 1647 aa29.48■■■□□ 2.31
CXCL12-204ENST00000395793 ZFYVE16Q7Z3T8 1539 aa29.47■■■□□ 2.31
CXCL12-204ENST00000395793 CCDC18Q5T9S5 1454 aa29.46■■■□□ 2.31
CXCL12-204ENST00000395793 CLIP1P30622 1438 aa29.45■■■□□ 2.31
CXCL12-204ENST00000395793 PTPRMP28827 1452 aa29.45■■■□□ 2.31
CXCL12-204ENST00000395793 FYCO1Q9BQS8 1478 aa29.43■■■□□ 2.3
CXCL12-204ENST00000395793 CDC42BPBQ9Y5S2 1711 aa29.43■■■□□ 2.3
CXCL12-204ENST00000395793 ARHGAP5Q13017 1502 aa29.41■■■□□ 2.3
CXCL12-204ENST00000395793 MAGI2Q86UL8 1455 aa29.41■■■□□ 2.3
CXCL12-204ENST00000395793 ARID4BQ4LE39 1312 aaPredicted RBP29.41■■■□□ 2.3
CXCL12-204ENST00000395793 EFCAB2Q5VUJ9 269 aa29.4■■■□□ 2.3
CXCL12-204ENST00000395793 PREX2Q70Z35 1606 aa29.39■■■□□ 2.3
CXCL12-204ENST00000395793 RIMS1Q86UR5 1692 aaKnown RBP29.37■■■□□ 2.29
CXCL12-204ENST00000395793 KDM5CP41229 1560 aa29.34■■■□□ 2.29
CXCL12-204ENST00000395793 CDC42BPAQ5VT25 1732 aa29.34■■■□□ 2.29
CXCL12-204ENST00000395793 ZNF518AQ6AHZ1 1483 aa29.3■■■□□ 2.28
CXCL12-204ENST00000395793 ABCC1P33527 1531 aa29.28■■■□□ 2.28
CXCL12-204ENST00000395793 ARHGEF12Q9NZN5 1544 aa29.27■■■□□ 2.28
CXCL12-204ENST00000395793 ATP10AO60312 1499 aa29.27■■■□□ 2.28
CXCL12-204ENST00000395793 ITSN2Q9NZM3 1697 aa29.27■■■□□ 2.28
CXCL12-204ENST00000395793 FER1L4A9Z1Z3 1794 aa29.25■■■□□ 2.27
CXCL12-204ENST00000395793 C9orf84Q5VXU9 1444 aa29.25■■■□□ 2.27
CXCL12-204ENST00000395793 AFAP1Q8N556 730 aa29.24■■■□□ 2.27
CXCL12-204ENST00000395793 DIP2CQ9Y2E4 1556 aa29.22■■■□□ 2.27
CXCL12-204ENST00000395793 TRAPPC8Q9Y2L5 1435 aa29.21■■■□□ 2.27
CXCL12-204ENST00000395793 ABCA6Q8N139 1617 aa29.21■■■□□ 2.27
CXCL12-204ENST00000395793 MLECQ14165 292 aa29.19■■■□□ 2.26
CXCL12-204ENST00000395793 CEP162Q5TB80 1403 aa29.19■■■□□ 2.26
CXCL12-204ENST00000395793 SAMD9LQ8IVG5 1584 aa29.18■■■□□ 2.26
CXCL12-204ENST00000395793 LMTK3Q96Q04 1460 aa29.17■■■□□ 2.26
CXCL12-204ENST00000395793 GPATCH8Q9UKJ3 1502 aaKnown RBP29.17■■■□□ 2.26
CXCL12-204ENST00000395793 MLH3Q9UHC1 1453 aa29.17■■■□□ 2.26
CXCL12-204ENST00000395793 REREQ9P2R6 1566 aa29.14■■■□□ 2.26
CXCL12-204ENST00000395793 KIDINS220Q9ULH0 1771 aa29.14■■■□□ 2.26
CXCL12-204ENST00000395793 SYCP2Q9BX26 1530 aa29.1■■■□□ 2.25
CXCL12-204ENST00000395793 PLPPR3Q6T4P5 718 aa29.09■■■□□ 2.25
CXCL12-204ENST00000395793 MTUS2Q5JR59 1369 aa29.07■■■□□ 2.24
CXCL12-204ENST00000395793 EHBP1L1Q8N3D4 1523 aa29.06■■■□□ 2.24
CXCL12-204ENST00000395793 MYT1LQ9UL68 1186 aa29.06■■■□□ 2.24
CXCL12-204ENST00000395793 TIAM1Q13009 1591 aa29.05■■■□□ 2.24
CXCL12-204ENST00000395793 ZNF777Q9ULD5 760 aaPredicted RBP29.05■■■□□ 2.24
CXCL12-204ENST00000395793 AGLP35573 1532 aa29.03■■■□□ 2.24
CXCL12-204ENST00000395793 ILDR1Q86SU0 546 aaPredicted RBP29.02■■■□□ 2.24
CXCL12-204ENST00000395793 CCNB3Q8WWL7 1395 aa29.01■■■□□ 2.24
CXCL12-204ENST00000395793 HNRNPMP52272 730 aaKnown RBP eCLIP28.98■■■□□ 2.23
CXCL12-204ENST00000395793 INO80Q9ULG1 1556 aaPredicted RBP28.97■■■□□ 2.23
CXCL12-204ENST00000395793 KIAA1107Q9UPP5 1409 aa28.97■■■□□ 2.23
CXCL12-204ENST00000395793 LOC105371045A0A1W2PR82 267 aa28.97■■■□□ 2.23
CXCL12-204ENST00000395793 HSPA2P54652 639 aa28.97■■■□□ 2.23
CXCL12-204ENST00000395793 CFDP1Q9UEE9 299 aaPredicted RBP28.97■■■□□ 2.23
CXCL12-204ENST00000395793 PLEKHH2Q8IVE3 1493 aa28.96■■■□□ 2.23
CXCL12-204ENST00000395793 PREX1Q8TCU6 1659 aa28.96■■■□□ 2.23
CXCL12-204ENST00000395793 CEBPAP49715 358 aaPredicted RBP28.95■■■□□ 2.22
CXCL12-204ENST00000395793 ATP7AQ04656 1500 aa28.94■■■□□ 2.22
CXCL12-204ENST00000395793 C3P01024 1663 aa28.93■■■□□ 2.22
CXCL12-204ENST00000395793 SPAG9O60271 1321 aaKnown RBP28.91■■■□□ 2.22
CXCL12-204ENST00000395793 SUPT6HQ7KZ85 1726 aaKnown RBP28.9■■■□□ 2.22
CXCL12-204ENST00000395793 ZNF644Q9H582 1327 aaPredicted RBP28.9■■■□□ 2.22
CXCL12-204ENST00000395793 PLXNC1O60486 1568 aa28.88■■■□□ 2.21
CXCL12-204ENST00000395793 NCOA2Q15596 1464 aa28.88■■■□□ 2.21
CXCL12-204ENST00000395793 MBD5Q9P267 1494 aa28.87■■■□□ 2.21
CXCL12-204ENST00000395793 VPS8Q8N3P4 1428 aa28.86■■■□□ 2.21
CXCL12-204ENST00000395793 SETD1BQ9UPS6 1966 aaKnown RBP28.82■■■□□ 2.2
CXCL12-204ENST00000395793 ADGBQ8N7X0 1667 aa28.81■■■□□ 2.2
CXCL12-204ENST00000395793 A2MP01023 1474 aa28.81■■■□□ 2.2
CXCL12-204ENST00000395793 MROH2AA6NES4 1674 aa28.8■■■□□ 2.2
CXCL12-204ENST00000395793 CAMSAP2Q08AD1 1489 aa28.78■■■□□ 2.2
CXCL12-204ENST00000395793 UHRF1BP1Q6BDS2 1440 aa28.77■■■□□ 2.2
CXCL12-204ENST00000395793 CNTLNQ9NXG0 1405 aa28.77■■■□□ 2.2
CXCL12-204ENST00000395793 LRRC9Q6ZRR7 1453 aa28.77■■■□□ 2.2
CXCL12-204ENST00000395793 STRCQ7RTU9 1775 aa28.75■■■□□ 2.19
CXCL12-204ENST00000395793 CLTCQ00610 1675 aaKnown RBP28.75■■■□□ 2.19
CXCL12-204ENST00000395793 ESF1Q9H501 851 aaKnown RBP28.73■■■□□ 2.19
CXCL12-204ENST00000395793 RTEL1-TNFRSF6BF6WH68 1400 aa28.72■■■□□ 2.19
CXCL12-204ENST00000395793 CCDC141Q6ZP82 1450 aa28.72■■■□□ 2.19
CXCL12-204ENST00000395793 MAP3K1Q13233 1512 aa28.69■■■□□ 2.18
CXCL12-204ENST00000395793 ARHGEF5Q12774 1597 aa28.67■■■□□ 2.18
CXCL12-204ENST00000395793 KANK4Q5T7N3 995 aaPredicted RBP28.67■■■□□ 2.18
CXCL12-204ENST00000395793 ZMYM3Q14202 1370 aa28.66■■■□□ 2.18
CXCL12-204ENST00000395793 FBXO41Q8TF61 875 aa28.65■■■□□ 2.18
CXCL12-204ENST00000395793 NPATQ14207 1427 aa28.64■■■□□ 2.18
CXCL12-204ENST00000395793 GGT6Q6P531 493 aa28.62■■■□□ 2.17
CXCL12-204ENST00000395793 DHX29Q7Z478 1369 aaKnown RBP28.62■■■□□ 2.17
CXCL12-204ENST00000395793 MYO3AQ8NEV4 1616 aa28.58■■■□□ 2.17
CXCL12-204ENST00000395793 PTPRKQ15262 1439 aa28.57■■■□□ 2.16
CXCL12-204ENST00000395793 ZNF142P52746 1687 aaPredicted RBP28.56■■■□□ 2.16
CXCL12-204ENST00000395793 MYOM3Q5VTT5 1437 aa28.55■■■□□ 2.16
CXCL12-204ENST00000395793 RSPH4AQ5TD94 716 aa28.55■■■□□ 2.16
CXCL12-204ENST00000395793 MAST1Q9Y2H9 1570 aa28.54■■■□□ 2.16
CXCL12-204ENST00000395793 NCOA1Q15788 1441 aa28.52■■■□□ 2.16
CXCL12-204ENST00000395793 CAMSAP1Q5T5Y3 1602 aa28.51■■■□□ 2.15
CXCL12-204ENST00000395793 PPP6R1Q9UPN7 881 aa28.51■■■□□ 2.15
CXCL12-204ENST00000395793 MIA2Q96PC5 1412 aa28.51■■■□□ 2.15
CXCL12-204ENST00000395793 KIF3BO15066 747 aa28.5■■■□□ 2.15
CXCL12-204ENST00000395793 CEP170BQ9Y4F5 1589 aaPredicted RBP28.5■■■□□ 2.15
CXCL12-204ENST00000395793 PTPRTO14522 1441 aa28.49■■■□□ 2.15
CXCL12-204ENST00000395793 KDM5DQ9BY66 1539 aa28.48■■■□□ 2.15
CXCL12-204ENST00000395793 CERKQ8TCT0 537 aa28.48■■■□□ 2.15
CXCL12-204ENST00000395793 DMRT2Q9Y5R5 561 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms