RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 C2orf72A6NCS6 295 aa10.11□□□□□ -0.79
TRAV40-201ENST00000390467 GTPBP6O43824 516 aaPredicted RBP10.11□□□□□ -0.79
TRAV40-201ENST00000390467 MARVELD3Q96A59 401 aa10.1□□□□□ -0.79
TRAV40-201ENST00000390467 DOK7Q18PE1 504 aa10.06□□□□□ -0.8
TRAV40-201ENST00000390467 RYDENQ9NUL5 291 aaKnown RBP10.05□□□□□ -0.8
TRAV40-201ENST00000390467 ZNF710Q8N1W2 664 aa10.03□□□□□ -0.8
TRAV40-201ENST00000390467 TMC2Q8TDI7 906 aa10.03□□□□□ -0.8
TRAV40-201ENST00000390467 EMP3P54852 163 aa10.02□□□□□ -0.81
TRAV40-201ENST00000390467 HOXB1P14653 301 aaPredicted RBP10.01□□□□□ -0.81
TRAV40-201ENST00000390467 BBXQ8WY36 941 aaPredicted RBP10□□□□□ -0.81
TRAV40-201ENST00000390467 POTEB3A0JP26 581 aa9.99□□□□□ -0.81
TRAV40-201ENST00000390467 POTEBQ6S5H4 581 aa9.99□□□□□ -0.81
TRAV40-201ENST00000390467 RIMBP2O15034 1052 aa9.98□□□□□ -0.81
TRAV40-201ENST00000390467 GPR153Q6NV75 609 aa9.98□□□□□ -0.81
TRAV40-201ENST00000390467 GPHNQ9NQX3 736 aaPredicted RBP9.98□□□□□ -0.81
TRAV40-201ENST00000390467 DSG2Q14126 1118 aa9.97□□□□□ -0.81
TRAV40-201ENST00000390467 CDAN1Q8IWY9 1227 aa9.97□□□□□ -0.81
TRAV40-201ENST00000390467 KHSRPQ92945 711 aaKnown RBP eCLIP9.97□□□□□ -0.81
TRAV40-201ENST00000390467 CRISPLD2Q9H0B8 497 aa9.97□□□□□ -0.81
TRAV40-201ENST00000390467 FAM205CA6NFA0 338 aa9.96□□□□□ -0.82
TRAV40-201ENST00000390467 ARSIQ5FYB1 569 aa9.96□□□□□ -0.82
TRAV40-201ENST00000390467 ZSWIM6Q9HCJ5 1215 aa9.96□□□□□ -0.82
TRAV40-201ENST00000390467 NCKAP5LQ9HCH0 1330 aa9.96□□□□□ -0.82
TRAV40-201ENST00000390467 FOXK1P85037 733 aa9.95□□□□□ -0.82
TRAV40-201ENST00000390467 HS3ST6Q96QI5 342 aa9.95□□□□□ -0.82
TRAV40-201ENST00000390467 CADPS2Q86UW7 1296 aa9.94□□□□□ -0.82
TRAV40-201ENST00000390467 PLPP6Q8IY26 295 aa9.93□□□□□ -0.82
TRAV40-201ENST00000390467 PCDH10Q9P2E7 1040 aa9.93□□□□□ -0.82
TRAV40-201ENST00000390467 SLC34A2O95436 690 aa9.92□□□□□ -0.82
TRAV40-201ENST00000390467 PCDHGA4Q9Y5G9 962 aa9.9□□□□□ -0.82
TRAV40-201ENST00000390467 ERBB3P21860 1342 aa9.89□□□□□ -0.83
TRAV40-201ENST00000390467 NUDT7P0C024 238 aa9.88□□□□□ -0.83
TRAV40-201ENST00000390467 VARS2Q5ST30 1063 aaKnown RBP9.88□□□□□ -0.83
TRAV40-201ENST00000390467 PPP1R15BQ5SWA1 713 aa9.88□□□□□ -0.83
TRAV40-201ENST00000390467 SPRYD3Q8NCJ5 442 aa9.87□□□□□ -0.83
TRAV40-201ENST00000390467 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.87□□□□□ -0.83
TRAV40-201ENST00000390467 KRTAP3-3Q9BYR6 98 aa9.86□□□□□ -0.83
TRAV40-201ENST00000390467 KRTAP3-2Q9BYR7 98 aa9.86□□□□□ -0.83
TRAV40-201ENST00000390467 PLSCR2Q9NRY7 297 aa9.86□□□□□ -0.83
TRAV40-201ENST00000390467 PDE4AP27815 886 aa9.85□□□□□ -0.83
TRAV40-201ENST00000390467 PAXIP1Q6ZW49 1069 aaPredicted RBP9.85□□□□□ -0.83
TRAV40-201ENST00000390467 PTCD2Q8WV60 388 aaKnown RBP9.85□□□□□ -0.83
TRAV40-201ENST00000390467 LARP6Q9BRS8 491 aaKnown RBP9.85□□□□□ -0.83
TRAV40-201ENST00000390467 MFSD10Q14728 455 aa9.84□□□□□ -0.83
TRAV40-201ENST00000390467 CFAP44Q96MT7 982 aa9.84□□□□□ -0.83
TRAV40-201ENST00000390467 KDM4FA0A1W2PPD8 638 aa9.83□□□□□ -0.84
TRAV40-201ENST00000390467 ZNF316A6NFI3 1004 aaPredicted RBP9.83□□□□□ -0.84
TRAV40-201ENST00000390467 UPF1Q92900 1129 aaKnown RBP eCLIP9.82□□□□□ -0.84
TRAV40-201ENST00000390467 DDX27Q96GQ7 796 aaKnown RBP9.82□□□□□ -0.84
TRAV40-201ENST00000390467 OXER1Q8TDS5 423 aa9.81□□□□□ -0.84
TRAV40-201ENST00000390467 LHX6Q9UPM6 363 aa9.81□□□□□ -0.84
TRAV40-201ENST00000390467 ZNF687Q8N1G0 1237 aa9.77□□□□□ -0.85
TRAV40-201ENST00000390467 EMILIN3Q9NT22 766 aa9.76□□□□□ -0.85
TRAV40-201ENST00000390467 SPNS2Q8IVW8 549 aa9.74□□□□□ -0.85
TRAV40-201ENST00000390467 TBC1D12O60347 775 aa9.73□□□□□ -0.85
TRAV40-201ENST00000390467 POTEEQ6S8J3 1075 aa9.72□□□□□ -0.85
TRAV40-201ENST00000390467 CAMK2BQ13554 666 aa9.7□□□□□ -0.86
TRAV40-201ENST00000390467 AXIN2Q9Y2T1 843 aa9.69□□□□□ -0.86
TRAV40-201ENST00000390467 EVI5O60447 810 aa9.68□□□□□ -0.86
TRAV40-201ENST00000390467 TSHZ2Q9NRE2 1034 aa9.68□□□□□ -0.86
TRAV40-201ENST00000390467 PSDA5PKW4 1024 aaPredicted RBP9.66□□□□□ -0.86
TRAV40-201ENST00000390467 MAP3K9P80192 1104 aa9.66□□□□□ -0.86
TRAV40-201ENST00000390467 MMRN1Q13201 1228 aa9.66□□□□□ -0.86
TRAV40-201ENST00000390467 ANO8Q9HCE9 1232 aaPredicted RBP9.65□□□□□ -0.86
TRAV40-201ENST00000390467 DPYSL4O14531 572 aa9.64□□□□□ -0.87
TRAV40-201ENST00000390467 PBX2P40425 430 aa9.64□□□□□ -0.87
TRAV40-201ENST00000390467 LSM11P83369 360 aaKnown RBP eCLIP9.64□□□□□ -0.87
TRAV40-201ENST00000390467 PPP4R3BQ5MIZ7 849 aa9.64□□□□□ -0.87
TRAV40-201ENST00000390467 FOSBP53539 338 aa9.63□□□□□ -0.87
TRAV40-201ENST00000390467 ZNF454Q8N9F8 522 aa9.63□□□□□ -0.87
TRAV40-201ENST00000390467 PSEN2P49810 448 aa9.62□□□□□ -0.87
TRAV40-201ENST00000390467 ANKRD13DQ6ZTN6 518 aa9.61□□□□□ -0.87
TRAV40-201ENST00000390467 JPH4Q96JJ6 628 aa9.61□□□□□ -0.87
TRAV40-201ENST00000390467 DMRTA1Q5VZB9 504 aa9.6□□□□□ -0.87
TRAV40-201ENST00000390467 ARHGAP33O14559 1287 aa9.59□□□□□ -0.87
TRAV40-201ENST00000390467 PLCB2Q00722 1185 aa9.58□□□□□ -0.88
TRAV40-201ENST00000390467 E2F4Q16254 413 aa9.58□□□□□ -0.88
TRAV40-201ENST00000390467 KCNK17Q96T54 332 aa9.58□□□□□ -0.88
TRAV40-201ENST00000390467 ADAM33Q9BZ11 813 aa9.57□□□□□ -0.88
TRAV40-201ENST00000390467 WDR70Q9NW82 654 aa9.57□□□□□ -0.88
TRAV40-201ENST00000390467 BCL2L12Q9HB09 334 aa9.56□□□□□ -0.88
TRAV40-201ENST00000390467 PCDHGA10Q9Y5H3 936 aa9.56□□□□□ -0.88
TRAV40-201ENST00000390467 PDIA6Q15084 440 aa9.55□□□□□ -0.88
TRAV40-201ENST00000390467 ZDHHC16Q969W1 377 aa9.54□□□□□ -0.88
TRAV40-201ENST00000390467 ADGRD1Q6QNK2 874 aa9.53□□□□□ -0.88
TRAV40-201ENST00000390467 MYT1LQ9UL68 1186 aa9.53□□□□□ -0.88
TRAV40-201ENST00000390467 ARIH1Q9Y4X5 557 aaPredicted RBP9.52□□□□□ -0.89
TRAV40-201ENST00000390467 DDX12PQ92771 950 aa9.51□□□□□ -0.89
TRAV40-201ENST00000390467 PHF14O94880 888 aa9.5□□□□□ -0.89
TRAV40-201ENST00000390467 PTGER2P43116 358 aa9.5□□□□□ -0.89
TRAV40-201ENST00000390467 RNF166Q96A37 237 aaPredicted RBP9.5□□□□□ -0.89
TRAV40-201ENST00000390467 TK2O00142 265 aa9.49□□□□□ -0.89
TRAV40-201ENST00000390467 PTPREP23469 700 aa9.49□□□□□ -0.89
TRAV40-201ENST00000390467 TYW1BQ6NUM6 668 aa9.49□□□□□ -0.89
TRAV40-201ENST00000390467 KCNV2Q8TDN2 545 aa9.49□□□□□ -0.89
TRAV40-201ENST00000390467 SPDYE16A6NNV3 312 aaPredicted RBP9.48□□□□□ -0.89
TRAV40-201ENST00000390467 HRO43593 1189 aa9.48□□□□□ -0.89
TRAV40-201ENST00000390467 COL9A1P20849 921 aa9.47□□□□□ -0.89
TRAV40-201ENST00000390467 FBXW7Q969H0 707 aa9.47□□□□□ -0.89
TRAV40-201ENST00000390467 KCNH8Q96L42 1107 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms