RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 PTPRMP28827 1452 aa28.23■■■□□ 2.11
HMGN1-204ENST00000380749 MAGI2Q86UL8 1455 aa28.21■■■□□ 2.11
HMGN1-204ENST00000380749 POGZQ7Z3K3 1410 aa28.21■■■□□ 2.11
HMGN1-204ENST00000380749 CCDC18Q5T9S5 1454 aa28.21■■■□□ 2.11
HMGN1-204ENST00000380749 RIMS1Q86UR5 1692 aaKnown RBP28.21■■■□□ 2.11
HMGN1-204ENST00000380749 CASKIN1Q8WXD9 1431 aa28.18■■■□□ 2.1
HMGN1-204ENST00000380749 SCAPERQ9BY12 1400 aa28.18■■■□□ 2.1
HMGN1-204ENST00000380749 ARHGAP5Q13017 1502 aa28.17■■■□□ 2.1
HMGN1-204ENST00000380749 SIGLEC1Q9BZZ2 1709 aa28.16■■■□□ 2.1
HMGN1-204ENST00000380749 CDC42BPBQ9Y5S2 1711 aa28.15■■■□□ 2.1
HMGN1-204ENST00000380749 YEATS2Q9ULM3 1422 aa28.14■■■□□ 2.1
HMGN1-204ENST00000380749 PREX2Q70Z35 1606 aa28.13■■■□□ 2.09
HMGN1-204ENST00000380749 EFCAB2Q5VUJ9 269 aa28.13■■■□□ 2.09
HMGN1-204ENST00000380749 FER1L4A9Z1Z3 1794 aa28.13■■■□□ 2.09
HMGN1-204ENST00000380749 FYCO1Q9BQS8 1478 aa28.13■■■□□ 2.09
HMGN1-204ENST00000380749 ZNF518AQ6AHZ1 1483 aa28.09■■■□□ 2.09
HMGN1-204ENST00000380749 KDM5CP41229 1560 aa28.07■■■□□ 2.08
HMGN1-204ENST00000380749 CDC42BPAQ5VT25 1732 aa28.07■■■□□ 2.08
HMGN1-204ENST00000380749 ITSN2Q9NZM3 1697 aa28.04■■■□□ 2.08
HMGN1-204ENST00000380749 C9orf84Q5VXU9 1444 aa28.03■■■□□ 2.08
HMGN1-204ENST00000380749 ATP10AO60312 1499 aa28.02■■■□□ 2.08
HMGN1-204ENST00000380749 ABCC1P33527 1531 aa28.01■■■□□ 2.07
HMGN1-204ENST00000380749 DIP2CQ9Y2E4 1556 aa27.96■■■□□ 2.07
HMGN1-204ENST00000380749 LMTK3Q96Q04 1460 aa27.96■■■□□ 2.07
HMGN1-204ENST00000380749 ARHGEF12Q9NZN5 1544 aa27.95■■■□□ 2.06
HMGN1-204ENST00000380749 ABCA6Q8N139 1617 aa27.95■■■□□ 2.06
HMGN1-204ENST00000380749 REREQ9P2R6 1566 aa27.93■■■□□ 2.06
HMGN1-204ENST00000380749 MLECQ14165 292 aa27.92■■■□□ 2.06
HMGN1-204ENST00000380749 MLH3Q9UHC1 1453 aa27.89■■■□□ 2.06
HMGN1-204ENST00000380749 ILDR1Q86SU0 546 aaPredicted RBP27.89■■■□□ 2.06
HMGN1-204ENST00000380749 AFAP1Q8N556 730 aa27.89■■■□□ 2.06
HMGN1-204ENST00000380749 MYT1LQ9UL68 1186 aa27.88■■■□□ 2.05
HMGN1-204ENST00000380749 KIDINS220Q9ULH0 1771 aa27.87■■■□□ 2.05
HMGN1-204ENST00000380749 SAMD9LQ8IVG5 1584 aa27.86■■■□□ 2.05
HMGN1-204ENST00000380749 PLPPR3Q6T4P5 718 aa27.86■■■□□ 2.05
HMGN1-204ENST00000380749 PREX1Q8TCU6 1659 aa27.85■■■□□ 2.05
HMGN1-204ENST00000380749 TRAPPC8Q9Y2L5 1435 aa27.85■■■□□ 2.05
HMGN1-204ENST00000380749 SYCP2Q9BX26 1530 aa27.82■■■□□ 2.04
HMGN1-204ENST00000380749 GPATCH8Q9UKJ3 1502 aaKnown RBP27.81■■■□□ 2.04
HMGN1-204ENST00000380749 SETD1BQ9UPS6 1966 aaKnown RBP27.81■■■□□ 2.04
HMGN1-204ENST00000380749 AGLP35573 1532 aa27.79■■■□□ 2.04
HMGN1-204ENST00000380749 MTUS2Q5JR59 1369 aa27.79■■■□□ 2.04
HMGN1-204ENST00000380749 EHBP1L1Q8N3D4 1523 aa27.79■■■□□ 2.04
HMGN1-204ENST00000380749 CEP162Q5TB80 1403 aa27.78■■■□□ 2.04
HMGN1-204ENST00000380749 PLEKHH2Q8IVE3 1493 aa27.76■■■□□ 2.03
HMGN1-204ENST00000380749 ZNF777Q9ULD5 760 aaPredicted RBP27.75■■■□□ 2.03
HMGN1-204ENST00000380749 C3P01024 1663 aa27.75■■■□□ 2.03
HMGN1-204ENST00000380749 CCNB3Q8WWL7 1395 aa27.74■■■□□ 2.03
HMGN1-204ENST00000380749 TIAM1Q13009 1591 aa27.72■■■□□ 2.03
HMGN1-204ENST00000380749 INO80Q9ULG1 1556 aaPredicted RBP27.71■■■□□ 2.03
HMGN1-204ENST00000380749 ATP7AQ04656 1500 aa27.71■■■□□ 2.03
HMGN1-204ENST00000380749 HSPA2P54652 639 aa27.71■■■□□ 2.03
HMGN1-204ENST00000380749 SUPT6HQ7KZ85 1726 aaKnown RBP27.7■■■□□ 2.02
HMGN1-204ENST00000380749 KIAA1107Q9UPP5 1409 aa27.69■■■□□ 2.02
HMGN1-204ENST00000380749 CFDP1Q9UEE9 299 aaPredicted RBP27.68■■■□□ 2.02
HMGN1-204ENST00000380749 MROH2AA6NES4 1674 aa27.66■■■□□ 2.02
HMGN1-204ENST00000380749 SPAG9O60271 1321 aaKnown RBP27.66■■■□□ 2.02
HMGN1-204ENST00000380749 ADGBQ8N7X0 1667 aa27.65■■■□□ 2.02
HMGN1-204ENST00000380749 CEBPAP49715 358 aaPredicted RBP27.64■■■□□ 2.02
HMGN1-204ENST00000380749 ESF1Q9H501 851 aaKnown RBP27.64■■■□□ 2.02
HMGN1-204ENST00000380749 PLXNC1O60486 1568 aa27.63■■■□□ 2.01
HMGN1-204ENST00000380749 UHRF1BP1Q6BDS2 1440 aa27.63■■■□□ 2.01
HMGN1-204ENST00000380749 CNTLNQ9NXG0 1405 aa27.63■■■□□ 2.01
HMGN1-204ENST00000380749 HNRNPMP52272 730 aaKnown RBP eCLIP27.62■■■□□ 2.01
HMGN1-204ENST00000380749 FBXO41Q8TF61 875 aa27.59■■■□□ 2.01
HMGN1-204ENST00000380749 STRCQ7RTU9 1775 aa27.57■■■□□ 2
HMGN1-204ENST00000380749 A2MP01023 1474 aa27.56■■■□□ 2
HMGN1-204ENST00000380749 CLTCQ00610 1675 aaKnown RBP27.56■■■□□ 2
HMGN1-204ENST00000380749 NCOA2Q15596 1464 aa27.53■■■□□ 2
HMGN1-204ENST00000380749 MBD5Q9P267 1494 aa27.5■■□□□ 1.99
HMGN1-204ENST00000380749 VPS8Q8N3P4 1428 aa27.5■■□□□ 1.99
HMGN1-204ENST00000380749 CAMSAP2Q08AD1 1489 aa27.48■■□□□ 1.99
HMGN1-204ENST00000380749 ZNF644Q9H582 1327 aaPredicted RBP27.48■■□□□ 1.99
HMGN1-204ENST00000380749 NPATQ14207 1427 aa27.46■■□□□ 1.99
HMGN1-204ENST00000380749 CCDC141Q6ZP82 1450 aa27.46■■□□□ 1.99
HMGN1-204ENST00000380749 RTEL1-TNFRSF6BF6WH68 1400 aa27.45■■□□□ 1.99
HMGN1-204ENST00000380749 ZNF142P52746 1687 aaPredicted RBP27.43■■□□□ 1.98
HMGN1-204ENST00000380749 MYO3AQ8NEV4 1616 aa27.42■■□□□ 1.98
HMGN1-204ENST00000380749 DMRT2Q9Y5R5 561 aa27.42■■□□□ 1.98
HMGN1-204ENST00000380749 ARHGEF5Q12774 1597 aa27.41■■□□□ 1.98
HMGN1-204ENST00000380749 LRRC9Q6ZRR7 1453 aa27.41■■□□□ 1.98
HMGN1-204ENST00000380749 ZMYM3Q14202 1370 aa27.4■■□□□ 1.98
HMGN1-204ENST00000380749 MAP3K1Q13233 1512 aa27.37■■□□□ 1.97
HMGN1-204ENST00000380749 LOC105371045A0A1W2PR82 267 aa27.37■■□□□ 1.97
HMGN1-204ENST00000380749 GGT6Q6P531 493 aa27.36■■□□□ 1.97
HMGN1-204ENST00000380749 NCOA1Q15788 1441 aa27.35■■□□□ 1.97
HMGN1-204ENST00000380749 CERKQ8TCT0 537 aa27.35■■□□□ 1.97
HMGN1-204ENST00000380749 CAMSAP1Q5T5Y3 1602 aa27.34■■□□□ 1.97
HMGN1-204ENST00000380749 PTPRTO14522 1441 aa27.34■■□□□ 1.97
HMGN1-204ENST00000380749 RSPH4AQ5TD94 716 aa27.34■■□□□ 1.97
HMGN1-204ENST00000380749 PPP6R1Q9UPN7 881 aa27.34■■□□□ 1.97
HMGN1-204ENST00000380749 FAM135AQ9P2D6 1515 aa27.34■■□□□ 1.97
HMGN1-204ENST00000380749 DHX29Q7Z478 1369 aaKnown RBP27.33■■□□□ 1.97
HMGN1-204ENST00000380749 CEP170BQ9Y4F5 1589 aaPredicted RBP27.32■■□□□ 1.96
HMGN1-204ENST00000380749 PTPRKQ15262 1439 aa27.31■■□□□ 1.96
HMGN1-204ENST00000380749 KDM5DQ9BY66 1539 aa27.29■■□□□ 1.96
HMGN1-204ENST00000380749 MAST1Q9Y2H9 1570 aa27.28■■□□□ 1.96
HMGN1-204ENST00000380749 MYOM3Q5VTT5 1437 aa27.24■■□□□ 1.95
HMGN1-204ENST00000380749 PLA2R1Q13018 1463 aa27.23■■□□□ 1.95
HMGN1-204ENST00000380749 RNF17Q9BXT8 1623 aaKnown RBP27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms