RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CSPP1Q1MSJ5 1256 aa12.11□□□□□ -0.47
SNX1-202ENST00000380285 DRC7Q8IY82 874 aa12.11□□□□□ -0.47
SNX1-202ENST00000380285 OS9Q13438 667 aaPredicted RBP12.1□□□□□ -0.47
SNX1-202ENST00000380285 TSHZ2Q9NRE2 1034 aa12.1□□□□□ -0.47
SNX1-202ENST00000380285 CC2D1BQ5T0F9 858 aaKnown RBP12.1□□□□□ -0.47
SNX1-202ENST00000380285 PHF14O94880 888 aa12.09□□□□□ -0.47
SNX1-202ENST00000380285 NEUROD2Q15784 382 aa12.09□□□□□ -0.47
SNX1-202ENST00000380285 EIF3AQ14152 1382 aaKnown RBP12.08□□□□□ -0.48
SNX1-202ENST00000380285 FMN1Q68DA7 1419 aa12.08□□□□□ -0.48
SNX1-202ENST00000380285 HSPA5P11021 654 aaKnown RBP12.08□□□□□ -0.48
SNX1-202ENST00000380285 POGKQ9P215 609 aa12.08□□□□□ -0.48
SNX1-202ENST00000380285 DDX11L8A8MPP1 907 aa12.07□□□□□ -0.48
SNX1-202ENST00000380285 KIAA1211Q6ZU35 1233 aa12.06□□□□□ -0.48
SNX1-202ENST00000380285 TPM4P67936 248 aa12.06□□□□□ -0.48
SNX1-202ENST00000380285 CARMIL1Q5VZK9 1371 aa12.06□□□□□ -0.48
SNX1-202ENST00000380285 DCAF11Q8TEB1 546 aa12.05□□□□□ -0.48
SNX1-202ENST00000380285 C14orf37Q86TY3 774 aa12.05□□□□□ -0.48
SNX1-202ENST00000380285 CCDC34Q96HJ3 373 aa12.05□□□□□ -0.48
SNX1-202ENST00000380285 U2SURPO15042 1029 aaKnown RBP12.05□□□□□ -0.48
SNX1-202ENST00000380285 MORC1Q86VD1 984 aa12.05□□□□□ -0.48
SNX1-202ENST00000380285 RAB3GAP2Q9H2M9 1393 aa12.04□□□□□ -0.48
SNX1-202ENST00000380285 HDAC5Q9UQL6 1122 aa12.04□□□□□ -0.48
SNX1-202ENST00000380285 HDGFP51858 240 aaKnown RBP12.04□□□□□ -0.48
SNX1-202ENST00000380285 FANCIQ9NVI1 1328 aa12.04□□□□□ -0.48
SNX1-202ENST00000380285 SKOR2Q2VWA4 1001 aaPredicted RBP12.03□□□□□ -0.48
SNX1-202ENST00000380285 KCNH8Q96L42 1107 aa12.01□□□□□ -0.49
SNX1-202ENST00000380285 CUX2O14529 1486 aa12□□□□□ -0.49
SNX1-202ENST00000380285 NLRP13Q86W25 1043 aa12□□□□□ -0.49
SNX1-202ENST00000380285 TPRNQ4KMQ1 711 aa12□□□□□ -0.49
SNX1-202ENST00000380285 SMARCA2P51531 1590 aa12□□□□□ -0.49
SNX1-202ENST00000380285 GOLGA6L1Q8N7Z2 621 aa12□□□□□ -0.49
SNX1-202ENST00000380285 KIF15Q9NS87 1388 aa11.99□□□□□ -0.49
SNX1-202ENST00000380285 HSP90AA2PQ14568 343 aaPredicted RBP11.99□□□□□ -0.49
SNX1-202ENST00000380285 CENPQQ7L2Z9 268 aaPredicted RBP11.99□□□□□ -0.49
SNX1-202ENST00000380285 SOGA1O94964 1423 aa11.99□□□□□ -0.49
SNX1-202ENST00000380285 TNNT3P45378 269 aaPredicted RBP11.99□□□□□ -0.49
SNX1-202ENST00000380285 HMMRO75330 724 aa11.99□□□□□ -0.49
SNX1-202ENST00000380285 GOLGA2Q08379 1002 aa11.98□□□□□ -0.49
SNX1-202ENST00000380285 CHMP4CQ96CF2 233 aa11.98□□□□□ -0.49
SNX1-202ENST00000380285 GPATCH3Q96I76 525 aa11.98□□□□□ -0.49
SNX1-202ENST00000380285 RTF1Q92541 710 aaKnown RBP11.98□□□□□ -0.49
SNX1-202ENST00000380285 GNL2Q13823 731 aaKnown RBP11.98□□□□□ -0.49
SNX1-202ENST00000380285 ANKRD30AQ9BXX3 1397 aa11.98□□□□□ -0.49
SNX1-202ENST00000380285 ZBTB7CA1YPR0 619 aa11.97□□□□□ -0.49
SNX1-202ENST00000380285 ST18O60284 1047 aa11.97□□□□□ -0.49
SNX1-202ENST00000380285 NAP1L2Q9ULW6 460 aaPredicted RBP11.97□□□□□ -0.49
SNX1-202ENST00000380285 NGEFQ8N5V2 710 aa11.97□□□□□ -0.49
SNX1-202ENST00000380285 EIF4G1Q04637 1599 aaKnown RBP11.97□□□□□ -0.49
SNX1-202ENST00000380285 HDGFL2Q7Z4V5 671 aaPredicted RBP11.97□□□□□ -0.49
SNX1-202ENST00000380285 ZBED9Q6R2W3 1325 aa11.97□□□□□ -0.49
SNX1-202ENST00000380285 SLKQ9H2G2 1235 aaPredicted RBP11.96□□□□□ -0.49
SNX1-202ENST00000380285 GSE1Q14687 1217 aa11.96□□□□□ -0.49
SNX1-202ENST00000380285 KIF3AQ9Y496 699 aa11.96□□□□□ -0.49
SNX1-202ENST00000380285 ITPRIPQ8IWB1 547 aa11.95□□□□□ -0.5
SNX1-202ENST00000380285 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
SNX1-202ENST00000380285 SPRYD3Q8NCJ5 442 aa11.95□□□□□ -0.5
SNX1-202ENST00000380285 MPHOSPH9Q99550 1183 aa11.95□□□□□ -0.5
SNX1-202ENST00000380285 LMOD3Q0VAK6 560 aa11.94□□□□□ -0.5
SNX1-202ENST00000380285 ATP6V1DQ9Y5K8 247 aa11.94□□□□□ -0.5
SNX1-202ENST00000380285 GZF1Q9H116 711 aaPredicted RBP11.94□□□□□ -0.5
SNX1-202ENST00000380285 TOP2AP11388 1531 aaKnown RBP11.94□□□□□ -0.5
SNX1-202ENST00000380285 CENPJQ9HC77 1338 aaPredicted RBP11.94□□□□□ -0.5
SNX1-202ENST00000380285 CARMIL2Q6F5E8 1435 aa11.94□□□□□ -0.5
SNX1-202ENST00000380285 MYBBP1AQ9BQG0 1328 aaKnown RBP11.93□□□□□ -0.5
SNX1-202ENST00000380285 PKD2Q13563 968 aa11.93□□□□□ -0.5
SNX1-202ENST00000380285 SRPK2P78362 688 aaKnown RBP11.93□□□□□ -0.5
SNX1-202ENST00000380285 CCDC18Q5T9S5 1454 aa11.93□□□□□ -0.5
SNX1-202ENST00000380285 RSPH4AQ5TD94 716 aa11.92□□□□□ -0.5
SNX1-202ENST00000380285 SENP3-EIF4A1A0A087X0R7 540 aa11.92□□□□□ -0.5
SNX1-202ENST00000380285 AAMPQ13685 434 aa11.92□□□□□ -0.5
SNX1-202ENST00000380285 CCDC88BA6NC98 1476 aa11.92□□□□□ -0.5
SNX1-202ENST00000380285 PLPPR3Q6T4P5 718 aa11.92□□□□□ -0.5
SNX1-202ENST00000380285 SPAG9O60271 1321 aaKnown RBP11.91□□□□□ -0.5
SNX1-202ENST00000380285 ABCC8Q09428 1581 aa11.91□□□□□ -0.5
SNX1-202ENST00000380285 A0A0G2JS52 829 aa11.91□□□□□ -0.5
SNX1-202ENST00000380285 MFAP1P55081 439 aaKnown RBP11.9□□□□□ -0.5
SNX1-202ENST00000380285 KIF16BQ96L93 1317 aa11.9□□□□□ -0.5
SNX1-202ENST00000380285 CGNL1Q0VF96 1302 aa11.9□□□□□ -0.5
SNX1-202ENST00000380285 TULP1O00294 542 aaPredicted RBP11.9□□□□□ -0.5
SNX1-202ENST00000380285 SMC4Q9NTJ3 1288 aa11.89□□□□□ -0.51
SNX1-202ENST00000380285 U2AF1L5P0DN76 240 aaPredicted RBP11.89□□□□□ -0.51
SNX1-202ENST00000380285 U2AF1Q01081 240 aaKnown RBP eCLIP11.89□□□□□ -0.51
SNX1-202ENST00000380285 NOC3LQ8WTT2 800 aaKnown RBP11.89□□□□□ -0.51
SNX1-202ENST00000380285 PDE4AP27815 886 aa11.89□□□□□ -0.51
SNX1-202ENST00000380285 SETQ01105 290 aaPredicted RBP11.89□□□□□ -0.51
SNX1-202ENST00000380285 STK31Q9BXU1 1019 aa11.89□□□□□ -0.51
SNX1-202ENST00000380285 NUP155O75694 1391 aa11.88□□□□□ -0.51
SNX1-202ENST00000380285 GPS2Q13227 327 aa11.88□□□□□ -0.51
SNX1-202ENST00000380285 MTERF4Q7Z6M4 381 aaKnown RBP11.88□□□□□ -0.51
SNX1-202ENST00000380285 TERF2IPQ9NYB0 399 aa11.87□□□□□ -0.51
SNX1-202ENST00000380285 UACAQ9BZF9 1416 aa11.87□□□□□ -0.51
SNX1-202ENST00000380285 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.87□□□□□ -0.51
SNX1-202ENST00000380285 CECR2Q9BXF3 1484 aa11.86□□□□□ -0.51
SNX1-202ENST00000380285 E9PSI1 815 aa11.86□□□□□ -0.51
SNX1-202ENST00000380285 DHX57Q6P158 1386 aaKnown RBP11.86□□□□□ -0.51
SNX1-202ENST00000380285 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.86□□□□□ -0.51
SNX1-202ENST00000380285 RRP1P56182 461 aaKnown RBP11.86□□□□□ -0.51
SNX1-202ENST00000380285 TPM3P06753 285 aa11.85□□□□□ -0.51
SNX1-202ENST00000380285 MAP7D2Q96T17 732 aa11.85□□□□□ -0.51
SNX1-202ENST00000380285 KANK4Q5T7N3 995 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms