RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 HDGFP51858 240 aaKnown RBP15.39■□□□□ 0.05
PCDHA9-201ENST00000378122 CCNB3Q8WWL7 1395 aa15.38■□□□□ 0.05
PCDHA9-201ENST00000378122 FBXO3Q9UK99 471 aa15.38■□□□□ 0.05
PCDHA9-201ENST00000378122 L1TD1Q5T7N2 865 aaKnown RBP15.38■□□□□ 0.05
PCDHA9-201ENST00000378122 EIF4G1Q04637 1599 aaKnown RBP15.38■□□□□ 0.05
PCDHA9-201ENST00000378122 BAZ1BQ9UIG0 1483 aaKnown RBP15.37■□□□□ 0.05
PCDHA9-201ENST00000378122 TSHZ2Q9NRE2 1034 aa15.37■□□□□ 0.05
PCDHA9-201ENST00000378122 OS9Q13438 667 aaPredicted RBP15.37■□□□□ 0.05
PCDHA9-201ENST00000378122 NUTM2FA1L443 756 aa15.36■□□□□ 0.05
PCDHA9-201ENST00000378122 CCER2I3L3R5 266 aa15.36■□□□□ 0.05
PCDHA9-201ENST00000378122 HSCBQ8IWL3 235 aa15.36■□□□□ 0.05
PCDHA9-201ENST00000378122 PPP1R1BQ9UD71 204 aaPredicted RBP15.35■□□□□ 0.05
PCDHA9-201ENST00000378122 HSPA5P11021 654 aaKnown RBP15.34■□□□□ 0.05
PCDHA9-201ENST00000378122 SRPK2P78362 688 aaKnown RBP15.34■□□□□ 0.05
PCDHA9-201ENST00000378122 NUTM2DQ5VT03 806 aaPredicted RBP15.34■□□□□ 0.05
PCDHA9-201ENST00000378122 MSNP26038 577 aaKnown RBP15.34■□□□□ 0.05
PCDHA9-201ENST00000378122 U2SURPO15042 1029 aaKnown RBP15.33■□□□□ 0.04
PCDHA9-201ENST00000378122 NUDCQ9Y266 331 aa15.33■□□□□ 0.04
PCDHA9-201ENST00000378122 SOGA1O94964 1423 aa15.32■□□□□ 0.04
PCDHA9-201ENST00000378122 SETD5Q9C0A6 1442 aa15.31■□□□□ 0.04
PCDHA9-201ENST00000378122 DCAF11Q8TEB1 546 aa15.31■□□□□ 0.04
PCDHA9-201ENST00000378122 KRI1Q8N9T8 703 aaKnown RBP15.3■□□□□ 0.04
PCDHA9-201ENST00000378122 TMF1P82094 1093 aa15.29■□□□□ 0.04
PCDHA9-201ENST00000378122 EVA1CP58658 441 aa15.29■□□□□ 0.04
PCDHA9-201ENST00000378122 FGD1P98174 961 aa15.29■□□□□ 0.04
PCDHA9-201ENST00000378122 GOLGA6L6A8MZA4 724 aa15.28■□□□□ 0.04
PCDHA9-201ENST00000378122 MS4A1P11836 297 aa15.28■□□□□ 0.04
PCDHA9-201ENST00000378122 WWC1Q8IX03 1113 aa15.27■□□□□ 0.04
PCDHA9-201ENST00000378122 EID1Q9Y6B2 187 aa15.26■□□□□ 0.03
PCDHA9-201ENST00000378122 CHMP4BQ9H444 224 aaKnown RBP15.25■□□□□ 0.03
PCDHA9-201ENST00000378122 CHAF1AQ13111 956 aaPredicted RBP15.25■□□□□ 0.03
PCDHA9-201ENST00000378122 ABCC8Q09428 1581 aa15.25■□□□□ 0.03
PCDHA9-201ENST00000378122 FOXD1Q16676 465 aa15.25■□□□□ 0.03
PCDHA9-201ENST00000378122 ARHGAP35Q9NRY4 1499 aa15.25■□□□□ 0.03
PCDHA9-201ENST00000378122 APBB1O00213 710 aa15.24■□□□□ 0.03
PCDHA9-201ENST00000378122 FHAD1B1AJZ9 1412 aa15.23■□□□□ 0.03
PCDHA9-201ENST00000378122 KCNJ4P48050 445 aa15.23■□□□□ 0.03
PCDHA9-201ENST00000378122 ARID3AQ99856 593 aa15.23■□□□□ 0.03
PCDHA9-201ENST00000378122 GZF1Q9H116 711 aaPredicted RBP15.23■□□□□ 0.03
PCDHA9-201ENST00000378122 GTF2E1P29083 439 aaPredicted RBP15.23■□□□□ 0.03
PCDHA9-201ENST00000378122 PIP4K2BP78356 416 aa15.22■□□□□ 0.03
PCDHA9-201ENST00000378122 KTN1Q86UP2 1357 aaKnown RBP15.22■□□□□ 0.03
PCDHA9-201ENST00000378122 KANK1Q14678 1352 aa15.22■□□□□ 0.03
PCDHA9-201ENST00000378122 LTV1Q96GA3 475 aaPredicted RBP15.21■□□□□ 0.03
PCDHA9-201ENST00000378122 DRC7Q8IY82 874 aa15.21■□□□□ 0.03
PCDHA9-201ENST00000378122 PNNQ9H307 717 aaKnown RBP15.21■□□□□ 0.03
PCDHA9-201ENST00000378122 RCAN3Q9UKA8 241 aa15.21■□□□□ 0.03
PCDHA9-201ENST00000378122 KANK4Q5T7N3 995 aaPredicted RBP15.21■□□□□ 0.02
PCDHA9-201ENST00000378122 SYTL4Q96C24 671 aaPredicted RBP15.2■□□□□ 0.02
PCDHA9-201ENST00000378122 MORC1Q86VD1 984 aa15.2■□□□□ 0.02
PCDHA9-201ENST00000378122 NACADO15069 1562 aa15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 IPO9Q96P70 1041 aaKnown RBP15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 SLKQ9H2G2 1235 aaPredicted RBP15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 VPS8Q8N3P4 1428 aa15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 RAB3GAP2Q9H2M9 1393 aa15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 GOLGA6L4A6NEF3 574 aa15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 TIMELESSQ9UNS1 1208 aa15.19■□□□□ 0.02
PCDHA9-201ENST00000378122 SF3B2Q13435 895 aaKnown RBP15.18■□□□□ 0.02
PCDHA9-201ENST00000378122 BAZ1AQ9NRL2 1556 aaPredicted RBP15.18■□□□□ 0.02
PCDHA9-201ENST00000378122 MCCP23508 829 aa15.18■□□□□ 0.02
PCDHA9-201ENST00000378122 CHMP3Q9Y3E7 222 aa15.17■□□□□ 0.02
PCDHA9-201ENST00000378122 TCERG1O14776 1098 aaKnown RBP15.16■□□□□ 0.02
PCDHA9-201ENST00000378122 CUX2O14529 1486 aa15.15■□□□□ 0.02
PCDHA9-201ENST00000378122 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
PCDHA9-201ENST00000378122 NGDNQ8NEJ9 315 aaKnown RBP15.14■□□□□ 0.01
PCDHA9-201ENST00000378122 FBXW7Q969H0 707 aa15.14■□□□□ 0.01
PCDHA9-201ENST00000378122 CARMIL1Q5VZK9 1371 aa15.14■□□□□ 0.01
PCDHA9-201ENST00000378122 ROCK2O75116 1388 aaKnown RBP15.14■□□□□ 0.01
PCDHA9-201ENST00000378122 RTF1Q92541 710 aaKnown RBP15.14■□□□□ 0.01
PCDHA9-201ENST00000378122 GBP4Q96PP9 640 aa15.13■□□□□ 0.01
PCDHA9-201ENST00000378122 NRDCO43847 1150 aa15.13■□□□□ 0.01
PCDHA9-201ENST00000378122 ITPRIPQ8IWB1 547 aa15.13■□□□□ 0.01
PCDHA9-201ENST00000378122 GOLGA6L3A6NEY3 463 aa15.13■□□□□ 0.01
PCDHA9-201ENST00000378122 NUTM2BA6NNL0 878 aaPredicted RBP15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 NUTM2EB1AL46 878 aaPredicted RBP15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 NUTM2AQ8IVF1 878 aaPredicted RBP15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 PTMSP20962 102 aa15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 CWC22Q9HCG8 908 aaKnown RBP15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 PKD2Q13563 968 aa15.12■□□□□ 0.01
PCDHA9-201ENST00000378122 MFAP1P55081 439 aaKnown RBP15.11■□□□□ 0.01
PCDHA9-201ENST00000378122 RAD21O60216 631 aa15.11■□□□□ 0.01
PCDHA9-201ENST00000378122 VPS53Q5VIR6 699 aa15.11■□□□□ 0.01
PCDHA9-201ENST00000378122 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
PCDHA9-201ENST00000378122 FRAT2O75474 233 aaPredicted RBP15.1■□□□□ 0.01
PCDHA9-201ENST00000378122 SAMD1Q6SPF0 538 aaPredicted RBP15.1■□□□□ 0.01
PCDHA9-201ENST00000378122 RALBP1Q15311 655 aa15.09■□□□□ 0.01
PCDHA9-201ENST00000378122 TAF7LQ5H9L4 462 aa15.09■□□□□ 0.01
PCDHA9-201ENST00000378122 CCDC88BA6NC98 1476 aa15.09■□□□□ 0.01
PCDHA9-201ENST00000378122 FAM69CQ0P6D2 419 aa15.09■□□□□ 0.01
PCDHA9-201ENST00000378122 RWDD1Q9H446 243 aaPredicted RBP15.09■□□□□ 0.01
PCDHA9-201ENST00000378122 MPHOSPH9Q99550 1183 aa15.08■□□□□ 0.01
PCDHA9-201ENST00000378122 FOXD4L1Q9NU39 408 aa15.08■□□□□ 0
PCDHA9-201ENST00000378122 CCDC146Q8IYE0 955 aa15.07■□□□□ 0
PCDHA9-201ENST00000378122 CFAP44Q96MT7 982 aa15.06■□□□□ 0
PCDHA9-201ENST00000378122 KIAA2012Q0VF49 1180 aa15.06■□□□□ 0
PCDHA9-201ENST00000378122 IPO8O15397 1037 aaKnown RBP15.06■□□□□ 0
PCDHA9-201ENST00000378122 PMFBP1Q8TBY8 1022 aa15.06■□□□□ 0
PCDHA9-201ENST00000378122 CREBRFQ8IUR6 639 aa15.05■□□□□ -0
PCDHA9-201ENST00000378122 GNL2Q13823 731 aaKnown RBP15.03■□□□□ -0
PCDHA9-201ENST00000378122 U2AF1L5P0DN76 240 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms