RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 KIF14Q15058 1648 aa11.33□□□□□ -0.6
VPS36-201ENST00000378060 NEFMP07197 916 aa11.33□□□□□ -0.6
VPS36-201ENST00000378060 FAM9BQ8IZU0 186 aa11.33□□□□□ -0.6
VPS36-201ENST00000378060 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
VPS36-201ENST00000378060 CCDC18Q5T9S5 1454 aa11.32□□□□□ -0.6
VPS36-201ENST00000378060 NPM2Q86SE8 214 aaKnown RBP11.31□□□□□ -0.6
VPS36-201ENST00000378060 CCDC136Q96JN2 1154 aa11.31□□□□□ -0.6
VPS36-201ENST00000378060 ZNF777Q9ULD5 760 aaPredicted RBP11.31□□□□□ -0.6
VPS36-201ENST00000378060 KDM5BQ9UGL1 1544 aa11.3□□□□□ -0.6
VPS36-201ENST00000378060 UHRF1BP1LA0JNW5 1464 aa11.3□□□□□ -0.6
VPS36-201ENST00000378060 TMC1Q8TDI8 760 aa11.29□□□□□ -0.6
VPS36-201ENST00000378060 MRS2Q9HD23 443 aa11.28□□□□□ -0.6
VPS36-201ENST00000378060 PHLDB1Q86UU1 1377 aa11.28□□□□□ -0.6
VPS36-201ENST00000378060 ASXL2Q76L83 1435 aa11.28□□□□□ -0.6
VPS36-201ENST00000378060 PLEKHD1A6NEE1 506 aa11.27□□□□□ -0.6
VPS36-201ENST00000378060 NPM1P06748 294 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS36-201ENST00000378060 NCOA2Q15596 1464 aa11.26□□□□□ -0.61
VPS36-201ENST00000378060 EHBP1L1Q8N3D4 1523 aa11.26□□□□□ -0.61
VPS36-201ENST00000378060 EIF4G2P78344 907 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS36-201ENST00000378060 UPF2Q9HAU5 1272 aaKnown RBP11.26□□□□□ -0.61
VPS36-201ENST00000378060 TTC37Q6PGP7 1564 aa11.26□□□□□ -0.61
VPS36-201ENST00000378060 MAP3K1Q13233 1512 aa11.25□□□□□ -0.61
VPS36-201ENST00000378060 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.25□□□□□ -0.61
VPS36-201ENST00000378060 TROQ12816 1431 aaPredicted RBP11.25□□□□□ -0.61
VPS36-201ENST00000378060 SUPT6HQ7KZ85 1726 aaKnown RBP11.25□□□□□ -0.61
VPS36-201ENST00000378060 WDR7Q9Y4E6 1490 aa11.24□□□□□ -0.61
VPS36-201ENST00000378060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS36-201ENST00000378060 ZNF644Q9H582 1327 aaPredicted RBP11.22□□□□□ -0.61
VPS36-201ENST00000378060 CHIC2Q9UKJ5 165 aa11.22□□□□□ -0.61
VPS36-201ENST00000378060 ANP32BQ92688 251 aaKnown RBP11.2□□□□□ -0.62
VPS36-201ENST00000378060 CDC42BPAQ5VT25 1732 aa11.2□□□□□ -0.62
VPS36-201ENST00000378060 TSPOAP1O95153 1857 aa11.2□□□□□ -0.62
VPS36-201ENST00000378060 ABCC10Q5T3U5 1492 aa11.19□□□□□ -0.62
VPS36-201ENST00000378060 TSPY4P0CV99 314 aa11.19□□□□□ -0.62
VPS36-201ENST00000378060 TSPY10P0CW01 314 aa11.19□□□□□ -0.62
VPS36-201ENST00000378060 CCNB3Q8WWL7 1395 aa11.18□□□□□ -0.62
VPS36-201ENST00000378060 ANP32EQ9BTT0 268 aa11.18□□□□□ -0.62
VPS36-201ENST00000378060 FAM69CQ0P6D2 419 aa11.18□□□□□ -0.62
VPS36-201ENST00000378060 CDC42BPBQ9Y5S2 1711 aa11.18□□□□□ -0.62
VPS36-201ENST00000378060 MAPKBP1O60336 1514 aa11.17□□□□□ -0.62
VPS36-201ENST00000378060 GPATCH8Q9UKJ3 1502 aaKnown RBP11.17□□□□□ -0.62
VPS36-201ENST00000378060 MYOM3Q5VTT5 1437 aa11.17□□□□□ -0.62
VPS36-201ENST00000378060 TIMELESSQ9UNS1 1208 aa11.16□□□□□ -0.62
VPS36-201ENST00000378060 KIF13AQ9H1H9 1805 aa11.16□□□□□ -0.62
VPS36-201ENST00000378060 EIF5BO60841 1220 aaKnown RBP11.16□□□□□ -0.62
VPS36-201ENST00000378060 HSP90AA1P07900 732 aaKnown RBP11.16□□□□□ -0.62
VPS36-201ENST00000378060 FGD6Q6ZV73 1430 aa11.16□□□□□ -0.62
VPS36-201ENST00000378060 DIP2BQ9P265 1576 aa11.15□□□□□ -0.62
VPS36-201ENST00000378060 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.62
VPS36-201ENST00000378060 NBR1Q14596 966 aa11.15□□□□□ -0.62
VPS36-201ENST00000378060 WDR43Q15061 677 aaKnown RBP eCLIP11.15□□□□□ -0.62
VPS36-201ENST00000378060 HIRIP3Q9BW71 556 aaPredicted RBP11.15□□□□□ -0.62
VPS36-201ENST00000378060 MYO5CQ9NQX4 1742 aa11.15□□□□□ -0.62
VPS36-201ENST00000378060 SALL2Q9Y467 1007 aaPredicted RBP11.15□□□□□ -0.62
VPS36-201ENST00000378060 CFDP1Q9UEE9 299 aaPredicted RBP11.15□□□□□ -0.62
VPS36-201ENST00000378060 ARHGAP5Q13017 1502 aa11.14□□□□□ -0.63
VPS36-201ENST00000378060 PTPN23Q9H3S7 1636 aa11.14□□□□□ -0.63
VPS36-201ENST00000378060 PREX2Q70Z35 1606 aa11.14□□□□□ -0.63
VPS36-201ENST00000378060 IRX6P78412 446 aaPredicted RBP11.14□□□□□ -0.63
VPS36-201ENST00000378060 ABCA9Q8IUA7 1624 aa11.13□□□□□ -0.63
VPS36-201ENST00000378060 ITSN2Q9NZM3 1697 aa11.12□□□□□ -0.63
VPS36-201ENST00000378060 HNRNPMP52272 730 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS36-201ENST00000378060 DDRGK1Q96HY6 314 aa11.12□□□□□ -0.63
VPS36-201ENST00000378060 SAMD9LQ8IVG5 1584 aa11.12□□□□□ -0.63
VPS36-201ENST00000378060 CD109Q6YHK3 1445 aa11.11□□□□□ -0.63
VPS36-201ENST00000378060 CAMSAP2Q08AD1 1489 aa11.11□□□□□ -0.63
VPS36-201ENST00000378060 RRBP1Q9P2E9 1410 aaKnown RBP11.11□□□□□ -0.63
VPS36-201ENST00000378060 GLIPR1L2Q4G1C9 344 aa11.11□□□□□ -0.63
VPS36-201ENST00000378060 RRP7BPQ9NSQ0 103 aa11.11□□□□□ -0.63
VPS36-201ENST00000378060 BCL11AQ9H165 835 aa11.1□□□□□ -0.63
VPS36-201ENST00000378060 SUPT16HQ9Y5B9 1047 aaKnown RBP11.1□□□□□ -0.63
VPS36-201ENST00000378060 MAP3K4Q9Y6R4 1608 aa11.1□□□□□ -0.63
VPS36-201ENST00000378060 PPP4R2Q9NY27 417 aa11.1□□□□□ -0.63
VPS36-201ENST00000378060 KDM2AQ9Y2K7 1162 aa11.1□□□□□ -0.63
VPS36-201ENST00000378060 PTPRKQ15262 1439 aa11.09□□□□□ -0.63
VPS36-201ENST00000378060 SYCP2Q9BX26 1530 aa11.09□□□□□ -0.63
VPS36-201ENST00000378060 FANCAO15360 1455 aa11.09□□□□□ -0.63
VPS36-201ENST00000378060 PLCH2O75038 1416 aa11.09□□□□□ -0.63
VPS36-201ENST00000378060 PPRC1Q5VV67 1664 aaKnown RBP11.09□□□□□ -0.63
VPS36-201ENST00000378060 ARHGEF12Q9NZN5 1544 aa11.09□□□□□ -0.63
VPS36-201ENST00000378060 SLC24A1O60721 1099 aa11.07□□□□□ -0.64
VPS36-201ENST00000378060 CHGAP10645 457 aaKnown RBP11.07□□□□□ -0.64
VPS36-201ENST00000378060 CCER2I3L3R5 266 aa11.06□□□□□ -0.64
VPS36-201ENST00000378060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.06□□□□□ -0.641e-8■□□□□ 11.1
VPS36-201ENST00000378060 AFAP1Q8N556 730 aa11.05□□□□□ -0.64
VPS36-201ENST00000378060 RAPGEF3O95398 923 aa11.05□□□□□ -0.64
VPS36-201ENST00000378060 BECN1Q14457 450 aa11.05□□□□□ -0.64
VPS36-201ENST00000378060 MIA2Q96PC5 1412 aa11.05□□□□□ -0.64
VPS36-201ENST00000378060 GLI2P10070 1586 aa11.04□□□□□ -0.64
VPS36-201ENST00000378060 TRAPPC8Q9Y2L5 1435 aa11.04□□□□□ -0.64
VPS36-201ENST00000378060 PPM1GO15355 546 aaPredicted RBP11.04□□□□□ -0.64
VPS36-201ENST00000378060 TCOF1Q13428 1488 aaKnown RBP11.04□□□□□ -0.64
VPS36-201ENST00000378060 EFCAB2Q5VUJ9 269 aa11.04□□□□□ -0.64
VPS36-201ENST00000378060 ADGRL1O94910 1474 aa11.04□□□□□ -0.64
VPS36-201ENST00000378060 SIN3AQ96ST3 1273 aa11.03□□□□□ -0.64
VPS36-201ENST00000378060 ABCC5O15440 1437 aa11.03□□□□□ -0.64
VPS36-201ENST00000378060 ABCC1P33527 1531 aa11.03□□□□□ -0.64
VPS36-201ENST00000378060 AKNAQ7Z591 1439 aa11.03□□□□□ -0.64
VPS36-201ENST00000378060 DAPK1P53355 1430 aa11.03□□□□□ -0.64
VPS36-201ENST00000378060 CDCA8Q53HL2 280 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms