RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 VPS8Q8N3P4 1428 aa13.04□□□□□ -0.32
CD28-202ENST00000374481 PDCL3Q9H2J4 239 aa13.04□□□□□ -0.32
CD28-202ENST00000374481 DDX11L8A8MPP1 907 aa13.03□□□□□ -0.32
CD28-202ENST00000374481 ZNF771Q7L3S4 317 aaPredicted RBP13.03□□□□□ -0.32
CD28-202ENST00000374481 BACH2Q9BYV9 841 aa13.03□□□□□ -0.32
CD28-202ENST00000374481 RRP1P56182 461 aaKnown RBP13.02□□□□□ -0.32
CD28-202ENST00000374481 R3HCC1Q9Y3T6 440 aaKnown RBP13.02□□□□□ -0.33
CD28-202ENST00000374481 SETD5Q9C0A6 1442 aa13.02□□□□□ -0.33
CD28-202ENST00000374481 WASHC2AQ641Q2 1341 aa13.01□□□□□ -0.33
CD28-202ENST00000374481 PRKRIP1Q9H875 184 aaPredicted RBP13.01□□□□□ -0.33
CD28-202ENST00000374481 ESPNB1AK53 854 aa13□□□□□ -0.33
CD28-202ENST00000374481 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
CD28-202ENST00000374481 KIAA1211Q6ZU35 1233 aa13□□□□□ -0.33
CD28-202ENST00000374481 CENPQQ7L2Z9 268 aaPredicted RBP12.98□□□□□ -0.33
CD28-202ENST00000374481 KANK4Q5T7N3 995 aaPredicted RBP12.97□□□□□ -0.33
CD28-202ENST00000374481 BBXQ8WY36 941 aaPredicted RBP12.97□□□□□ -0.33
CD28-202ENST00000374481 SOGA1O94964 1423 aa12.97□□□□□ -0.33
CD28-202ENST00000374481 ABCC8Q09428 1581 aa12.97□□□□□ -0.33
CD28-202ENST00000374481 WASHC2CQ9Y4E1 1318 aa12.97□□□□□ -0.33
CD28-202ENST00000374481 CSPP1Q1MSJ5 1256 aa12.96□□□□□ -0.33
CD28-202ENST00000374481 TPRNQ4KMQ1 711 aa12.96□□□□□ -0.33
CD28-202ENST00000374481 RRP7BPQ9NSQ0 103 aa12.96□□□□□ -0.33
CD28-202ENST00000374481 CCDC88BA6NC98 1476 aa12.96□□□□□ -0.34
CD28-202ENST00000374481 CALD1Q05682 793 aaKnown RBP12.95□□□□□ -0.34
CD28-202ENST00000374481 POGKQ9P215 609 aa12.95□□□□□ -0.34
CD28-202ENST00000374481 SKOR2Q2VWA4 1001 aaPredicted RBP12.94□□□□□ -0.34
CD28-202ENST00000374481 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
CD28-202ENST00000374481 PLIN1O60240 522 aa12.94□□□□□ -0.34
CD28-202ENST00000374481 KDM2AQ9Y2K7 1162 aa12.94□□□□□ -0.34
CD28-202ENST00000374481 ZHX1Q9UKY1 873 aaPredicted RBP12.93□□□□□ -0.34
CD28-202ENST00000374481 CRBNQ96SW2 442 aa12.92□□□□□ -0.34
CD28-202ENST00000374481 NPM1P06748 294 aaKnown RBP eCLIP12.92□□□□□ -0.34
CD28-202ENST00000374481 CHMP5Q9NZZ3 219 aa12.92□□□□□ -0.34
CD28-202ENST00000374481 TRAK2O60296 914 aa12.92□□□□□ -0.34
CD28-202ENST00000374481 DNAJC5Q9H3Z4 198 aa12.92□□□□□ -0.34
CD28-202ENST00000374481 DDX49Q9Y6V7 483 aaKnown RBP12.92□□□□□ -0.34
CD28-202ENST00000374481 PDIA4P13667 645 aaKnown RBP12.91□□□□□ -0.34
CD28-202ENST00000374481 MFAP1P55081 439 aaKnown RBP12.91□□□□□ -0.34
CD28-202ENST00000374481 CLCN1P35523 988 aa12.91□□□□□ -0.34
CD28-202ENST00000374481 PRDM10Q9NQV6 1147 aa12.91□□□□□ -0.34
CD28-202ENST00000374481 TOP2AP11388 1531 aaKnown RBP12.9□□□□□ -0.34
CD28-202ENST00000374481 APPP05067 770 aa12.9□□□□□ -0.34
CD28-202ENST00000374481 FTSJ3Q8IY81 847 aaKnown RBP12.9□□□□□ -0.34
CD28-202ENST00000374481 FBLN2P98095 1184 aa12.89□□□□□ -0.35
CD28-202ENST00000374481 DNAJC5BQ9UF47 199 aa12.89□□□□□ -0.35
CD28-202ENST00000374481 AKNAQ7Z591 1439 aa12.88□□□□□ -0.35
CD28-202ENST00000374481 NASPP49321 788 aaPredicted RBP12.88□□□□□ -0.35
CD28-202ENST00000374481 GRPEL1Q9HAV7 217 aa12.88□□□□□ -0.35
CD28-202ENST00000374481 CARD11Q9BXL7 1154 aa12.87□□□□□ -0.35
CD28-202ENST00000374481 KTN1Q86UP2 1357 aaKnown RBP12.87□□□□□ -0.35
CD28-202ENST00000374481 MTUS2Q5JR59 1369 aa12.87□□□□□ -0.35
CD28-202ENST00000374481 UQCRHLA0A096LP55 91 aa12.86□□□□□ -0.35
CD28-202ENST00000374481 UQCRHP07919 91 aa12.86□□□□□ -0.35
CD28-202ENST00000374481 FOXD4L1Q9NU39 408 aa12.86□□□□□ -0.35
CD28-202ENST00000374481 ISY1Q9ULR0 285 aaKnown RBP12.86□□□□□ -0.35
CD28-202ENST00000374481 MAPK8IP2Q13387 824 aaPredicted RBP12.86□□□□□ -0.35
CD28-202ENST00000374481 MAPK8IP3Q9UPT6 1336 aa12.85□□□□□ -0.35
CD28-202ENST00000374481 CC2D1BQ5T0F9 858 aaKnown RBP12.85□□□□□ -0.35
CD28-202ENST00000374481 CCDC66A2RUB6 948 aa12.85□□□□□ -0.35
CD28-202ENST00000374481 CCDC173Q0VFZ6 552 aa12.84□□□□□ -0.35
CD28-202ENST00000374481 DRC7Q8IY82 874 aa12.83□□□□□ -0.35
CD28-202ENST00000374481 RALBP1Q15311 655 aa12.83□□□□□ -0.36
CD28-202ENST00000374481 SYAP1Q96A49 352 aaPredicted RBP12.83□□□□□ -0.36
CD28-202ENST00000374481 RRAGDQ9NQL2 400 aaPredicted RBP12.83□□□□□ -0.36
CD28-202ENST00000374481 ARID3CA6NKF2 412 aa12.83□□□□□ -0.36
CD28-202ENST00000374481 TAF3Q5VWG9 929 aa12.83□□□□□ -0.36
CD28-202ENST00000374481 RWDD1Q9H446 243 aaPredicted RBP12.82□□□□□ -0.36
CD28-202ENST00000374481 NEUROD2Q15784 382 aa12.81□□□□□ -0.36
CD28-202ENST00000374481 ZSCAN30Q86W11 494 aa12.81□□□□□ -0.36
CD28-202ENST00000374481 CASC1Q6TDU7 716 aa12.81□□□□□ -0.36
CD28-202ENST00000374481 PMFBP1Q8TBY8 1022 aa12.81□□□□□ -0.36
CD28-202ENST00000374481 KNSTRNQ9Y448 316 aa12.8□□□□□ -0.36
CD28-202ENST00000374481 MCM4P33991 863 aa12.8□□□□□ -0.36
CD28-202ENST00000374481 SMARCA4P51532 1647 aa12.79□□□□□ -0.36
CD28-202ENST00000374481 HMGN5P82970 282 aaKnown RBP12.79□□□□□ -0.36
CD28-202ENST00000374481 GOLGA6L6A8MZA4 724 aa12.78□□□□□ -0.36
CD28-202ENST00000374481 BCL11BQ9C0K0 894 aaPredicted RBP12.78□□□□□ -0.36
CD28-202ENST00000374481 FGD1P98174 961 aa12.78□□□□□ -0.36
CD28-202ENST00000374481 NLRP13Q86W25 1043 aa12.78□□□□□ -0.36
CD28-202ENST00000374481 ZNF777Q9ULD5 760 aaPredicted RBP12.78□□□□□ -0.36
CD28-202ENST00000374481 NRDCO43847 1150 aa12.78□□□□□ -0.36
CD28-202ENST00000374481 SMG6Q86US8 1419 aaKnown RBP12.77□□□□□ -0.36
CD28-202ENST00000374481 CCDC184Q52MB2 194 aa12.77□□□□□ -0.37
CD28-202ENST00000374481 RUSC2Q8N2Y8 1516 aa12.77□□□□□ -0.37
CD28-202ENST00000374481 SMARCA2P51531 1590 aa12.76□□□□□ -0.37
CD28-202ENST00000374481 CGNQ9P2M7 1197 aaKnown RBP12.76□□□□□ -0.37
CD28-202ENST00000374481 GOLGA2Q08379 1002 aa12.76□□□□□ -0.37
CD28-202ENST00000374481 CCDC39Q9UFE4 941 aa12.76□□□□□ -0.37
CD28-202ENST00000374481 XRCC6P12956 609 aaKnown RBP eCLIP12.76□□□□□ -0.37
CD28-202ENST00000374481 TAF7LQ5H9L4 462 aa12.76□□□□□ -0.37
CD28-202ENST00000374481 NAP1L2Q9ULW6 460 aaPredicted RBP12.76□□□□□ -0.37
CD28-202ENST00000374481 CBX1P83916 185 aa12.76□□□□□ -0.37
CD28-202ENST00000374481 L3MBTL2Q969R5 705 aa12.75□□□□□ -0.37
CD28-202ENST00000374481 DIAPH3Q9NSV4 1193 aa12.74□□□□□ -0.37
CD28-202ENST00000374481 CNTLNQ9NXG0 1405 aa12.74□□□□□ -0.37
CD28-202ENST00000374481 AAMPQ13685 434 aa12.74□□□□□ -0.37
CD28-202ENST00000374481 DCAF11Q8TEB1 546 aa12.74□□□□□ -0.37
CD28-202ENST00000374481 ZRSR1Q15695 479 aaKnown RBP12.73□□□□□ -0.37
CD28-202ENST00000374481 OSCARQ8IYS5 282 aa12.73□□□□□ -0.37
CD28-202ENST00000374481 GOLGA6L1Q8N7Z2 621 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms