RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MAGI2Q86UL8 1455 aa35.02■■■■□ 3.2
CCDC28B-201ENST00000373602 ARHGAP5Q13017 1502 aa35.01■■■■□ 3.2
CCDC28B-201ENST00000373602 ADAMTSL3P82987 1691 aa34.99■■■■□ 3.19
CCDC28B-201ENST00000373602 ZFYVE16Q7Z3T8 1539 aa34.99■■■■□ 3.19
CCDC28B-201ENST00000373602 ARID4BQ4LE39 1312 aaPredicted RBP34.98■■■■□ 3.19
CCDC28B-201ENST00000373602 YEATS2Q9ULM3 1422 aa34.98■■■■□ 3.19
CCDC28B-201ENST00000373602 CEP162Q5TB80 1403 aa34.97■■■■□ 3.19
CCDC28B-201ENST00000373602 BCORL1Q5H9F3 1711 aa34.95■■■■□ 3.19
CCDC28B-201ENST00000373602 CDC42BPBQ9Y5S2 1711 aa34.95■■■■□ 3.18
CCDC28B-201ENST00000373602 PREX2Q70Z35 1606 aa34.92■■■■□ 3.18
CCDC28B-201ENST00000373602 ZNF518AQ6AHZ1 1483 aa34.89■■■■□ 3.18
CCDC28B-201ENST00000373602 PTPRMP28827 1452 aa34.87■■■■□ 3.17
CCDC28B-201ENST00000373602 CDC42BPAQ5VT25 1732 aa34.85■■■■□ 3.17
CCDC28B-201ENST00000373602 KDM5CP41229 1560 aa34.84■■■■□ 3.17
CCDC28B-201ENST00000373602 AFAP1Q8N556 730 aa34.84■■■■□ 3.17
CCDC28B-201ENST00000373602 MADDQ8WXG6 1647 aa34.84■■■■□ 3.17
CCDC28B-201ENST00000373602 SIGLEC1Q9BZZ2 1709 aa34.83■■■■□ 3.17
CCDC28B-201ENST00000373602 ATP10AO60312 1499 aa34.83■■■■□ 3.17
CCDC28B-201ENST00000373602 HECW2Q9P2P5 1572 aa34.83■■■■□ 3.17
CCDC28B-201ENST00000373602 ABCC1P33527 1531 aa34.81■■■■□ 3.16
CCDC28B-201ENST00000373602 LOC105371045A0A1W2PR82 267 aa34.8■■■■□ 3.16
CCDC28B-201ENST00000373602 ARHGEF12Q9NZN5 1544 aa34.79■■■■□ 3.16
CCDC28B-201ENST00000373602 GPATCH8Q9UKJ3 1502 aaKnown RBP34.79■■■■□ 3.16
CCDC28B-201ENST00000373602 MTUS2Q5JR59 1369 aa34.78■■■■□ 3.16
CCDC28B-201ENST00000373602 C9orf84Q5VXU9 1444 aa34.78■■■■□ 3.16
CCDC28B-201ENST00000373602 TRAPPC8Q9Y2L5 1435 aa34.76■■■■□ 3.16
CCDC28B-201ENST00000373602 ITSN2Q9NZM3 1697 aa34.74■■■■□ 3.15
CCDC28B-201ENST00000373602 MLH3Q9UHC1 1453 aa34.73■■■■□ 3.15
CCDC28B-201ENST00000373602 RIMS1Q86UR5 1692 aaKnown RBP34.71■■■■□ 3.15
CCDC28B-201ENST00000373602 MYT1LQ9UL68 1186 aa34.7■■■■□ 3.15
CCDC28B-201ENST00000373602 ZNF777Q9ULD5 760 aaPredicted RBP34.69■■■■□ 3.14
CCDC28B-201ENST00000373602 CCNB3Q8WWL7 1395 aa34.69■■■■□ 3.14
CCDC28B-201ENST00000373602 EHBP1L1Q8N3D4 1523 aa34.69■■■■□ 3.14
CCDC28B-201ENST00000373602 SAMD9LQ8IVG5 1584 aa34.69■■■■□ 3.14
CCDC28B-201ENST00000373602 MLECQ14165 292 aa34.68■■■■□ 3.14
CCDC28B-201ENST00000373602 DIP2CQ9Y2E4 1556 aa34.67■■■■□ 3.14
CCDC28B-201ENST00000373602 CFDP1Q9UEE9 299 aaPredicted RBP34.66■■■■□ 3.14
CCDC28B-201ENST00000373602 REREQ9P2R6 1566 aa34.63■■■■□ 3.13
CCDC28B-201ENST00000373602 ABCA6Q8N139 1617 aa34.63■■■■□ 3.13
CCDC28B-201ENST00000373602 SYCP2Q9BX26 1530 aa34.61■■■■□ 3.13
CCDC28B-201ENST00000373602 KIAA1107Q9UPP5 1409 aa34.61■■■■□ 3.13
CCDC28B-201ENST00000373602 VPS8Q8N3P4 1428 aa34.6■■■■□ 3.13
CCDC28B-201ENST00000373602 PLEKHH2Q8IVE3 1493 aa34.59■■■■□ 3.13
CCDC28B-201ENST00000373602 FER1L4A9Z1Z3 1794 aa34.59■■■■□ 3.13
CCDC28B-201ENST00000373602 TIAM1Q13009 1591 aa34.58■■■■□ 3.13
CCDC28B-201ENST00000373602 HNRNPMP52272 730 aaKnown RBP eCLIP34.58■■■■□ 3.13
CCDC28B-201ENST00000373602 KIDINS220Q9ULH0 1771 aa34.58■■■■□ 3.13
CCDC28B-201ENST00000373602 AGLP35573 1532 aa34.52■■■■□ 3.12
CCDC28B-201ENST00000373602 SPAG9O60271 1321 aaKnown RBP34.51■■■■□ 3.11
CCDC28B-201ENST00000373602 PLPPR3Q6T4P5 718 aa34.5■■■■□ 3.11
CCDC28B-201ENST00000373602 NCOA2Q15596 1464 aa34.48■■■■□ 3.11
CCDC28B-201ENST00000373602 LMTK3Q96Q04 1460 aa34.48■■■■□ 3.11
CCDC28B-201ENST00000373602 SUPT6HQ7KZ85 1726 aaKnown RBP34.47■■■■□ 3.11
CCDC28B-201ENST00000373602 ZNF644Q9H582 1327 aaPredicted RBP34.47■■■■□ 3.11
CCDC28B-201ENST00000373602 ATP7AQ04656 1500 aa34.43■■■■□ 3.1
CCDC28B-201ENST00000373602 INO80Q9ULG1 1556 aaPredicted RBP34.42■■■■□ 3.1
CCDC28B-201ENST00000373602 LRRC9Q6ZRR7 1453 aa34.41■■■■□ 3.1
CCDC28B-201ENST00000373602 MBD5Q9P267 1494 aa34.41■■■■□ 3.1
CCDC28B-201ENST00000373602 MAP3K1Q13233 1512 aa34.39■■■■□ 3.1
CCDC28B-201ENST00000373602 CEBPAP49715 358 aaPredicted RBP34.37■■■■□ 3.09
CCDC28B-201ENST00000373602 A2MP01023 1474 aa34.32■■■■□ 3.08
CCDC28B-201ENST00000373602 KANK4Q5T7N3 995 aaPredicted RBP34.31■■■■□ 3.08
CCDC28B-201ENST00000373602 ESF1Q9H501 851 aaKnown RBP34.31■■■■□ 3.08
CCDC28B-201ENST00000373602 CAMSAP2Q08AD1 1489 aa34.31■■■■□ 3.08
CCDC28B-201ENST00000373602 PLXNC1O60486 1568 aa34.31■■■■□ 3.08
CCDC28B-201ENST00000373602 RTEL1-TNFRSF6BF6WH68 1400 aa34.3■■■■□ 3.08
CCDC28B-201ENST00000373602 HSPA2P54652 639 aa34.29■■■■□ 3.08
CCDC28B-201ENST00000373602 CNTLNQ9NXG0 1405 aa34.27■■■■□ 3.08
CCDC28B-201ENST00000373602 RSPH4AQ5TD94 716 aa34.26■■■■□ 3.08
CCDC28B-201ENST00000373602 CCDC141Q6ZP82 1450 aa34.26■■■■□ 3.07
CCDC28B-201ENST00000373602 ADGBQ8N7X0 1667 aa34.25■■■■□ 3.07
CCDC28B-201ENST00000373602 PREX1Q8TCU6 1659 aa34.25■■■■□ 3.07
CCDC28B-201ENST00000373602 C3P01024 1663 aa34.24■■■■□ 3.07
CCDC28B-201ENST00000373602 SETD1BQ9UPS6 1966 aaKnown RBP34.2■■■■□ 3.07
CCDC28B-201ENST00000373602 ARHGEF5Q12774 1597 aa34.19■■■■□ 3.06
CCDC28B-201ENST00000373602 DHX29Q7Z478 1369 aaKnown RBP34.16■■■■□ 3.06
CCDC28B-201ENST00000373602 UHRF1BP1Q6BDS2 1440 aa34.15■■■■□ 3.06
CCDC28B-201ENST00000373602 APLP2Q06481 763 aa34.15■■■■□ 3.06
CCDC28B-201ENST00000373602 MROH2AA6NES4 1674 aa34.15■■■■□ 3.06
CCDC28B-201ENST00000373602 MYOM3Q5VTT5 1437 aa34.14■■■■□ 3.06
CCDC28B-201ENST00000373602 MIA2Q96PC5 1412 aa34.13■■■■□ 3.05
CCDC28B-201ENST00000373602 GGT6Q6P531 493 aa34.13■■■■□ 3.05
CCDC28B-201ENST00000373602 ILDR1Q86SU0 546 aaPredicted RBP34.13■■■■□ 3.05
CCDC28B-201ENST00000373602 ZMYM3Q14202 1370 aa34.11■■■■□ 3.05
CCDC28B-201ENST00000373602 PPP6R1Q9UPN7 881 aa34.11■■■■□ 3.05
CCDC28B-201ENST00000373602 TSPY4P0CV99 314 aa34.1■■■■□ 3.05
CCDC28B-201ENST00000373602 TSPY10P0CW01 314 aa34.1■■■■□ 3.05
CCDC28B-201ENST00000373602 CLTCQ00610 1675 aaKnown RBP34.07■■■■□ 3.04
CCDC28B-201ENST00000373602 NPATQ14207 1427 aa34.06■■■■□ 3.04
CCDC28B-201ENST00000373602 MAST1Q9Y2H9 1570 aa34.02■■■■□ 3.04
CCDC28B-201ENST00000373602 KIF3BO15066 747 aa34.01■■■■□ 3.03
CCDC28B-201ENST00000373602 PTPRKQ15262 1439 aa33.96■■■■□ 3.03
CCDC28B-201ENST00000373602 STRCQ7RTU9 1775 aa33.95■■■■□ 3.02
CCDC28B-201ENST00000373602 PTPN23Q9H3S7 1636 aa33.91■■■■□ 3.02
CCDC28B-201ENST00000373602 FAM135AQ9P2D6 1515 aa33.91■■■■□ 3.02
CCDC28B-201ENST00000373602 DMRT2Q9Y5R5 561 aa33.9■■■■□ 3.02
CCDC28B-201ENST00000373602 FGD6Q6ZV73 1430 aa33.88■■■■□ 3.01
CCDC28B-201ENST00000373602 KDM5DQ9BY66 1539 aa33.88■■■■□ 3.01
CCDC28B-201ENST00000373602 ABCC5O15440 1437 aa33.86■■■■□ 3.01
CCDC28B-201ENST00000373602 TCOF1Q13428 1488 aaKnown RBP33.85■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms