RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 CDC42BPAQ5VT25 1732 aa19.23■□□□□ 0.67
LDB3-203ENST00000372056 PLEKHH2Q8IVE3 1493 aa19.23■□□□□ 0.67
LDB3-203ENST00000372056 DHX57Q6P158 1386 aaKnown RBP19.23■□□□□ 0.67
LDB3-203ENST00000372056 PREX2Q70Z35 1606 aa19.22■□□□□ 0.67
LDB3-203ENST00000372056 MYO5CQ9NQX4 1742 aa19.22■□□□□ 0.67
LDB3-203ENST00000372056 KCNH8Q96L42 1107 aa19.22■□□□□ 0.67
LDB3-203ENST00000372056 PLCH2O75038 1416 aa19.21■□□□□ 0.67
LDB3-203ENST00000372056 CLSPNQ9HAW4 1339 aa19.2■□□□□ 0.66
LDB3-203ENST00000372056 EFCAB2Q5VUJ9 269 aa19.2■□□□□ 0.66
LDB3-203ENST00000372056 ABCA9Q8IUA7 1624 aa19.19■□□□□ 0.66
LDB3-203ENST00000372056 RAB3GAP2Q9H2M9 1393 aa19.18■□□□□ 0.66
LDB3-203ENST00000372056 AKNAQ7Z591 1439 aa19.18■□□□□ 0.66
LDB3-203ENST00000372056 SETD5Q9C0A6 1442 aa19.18■□□□□ 0.66
LDB3-203ENST00000372056 CAMSAP2Q08AD1 1489 aa19.17■□□□□ 0.66
LDB3-203ENST00000372056 KIAA1107Q9UPP5 1409 aa19.17■□□□□ 0.66
LDB3-203ENST00000372056 TTC37Q6PGP7 1564 aa19.16■□□□□ 0.66
LDB3-203ENST00000372056 DNMT1P26358 1616 aaKnown RBP19.16■□□□□ 0.66
LDB3-203ENST00000372056 CDC42BPBQ9Y5S2 1711 aa19.15■□□□□ 0.66
LDB3-203ENST00000372056 ARHGAP5Q13017 1502 aa19.15■□□□□ 0.66
LDB3-203ENST00000372056 ROCK1Q13464 1354 aa19.15■□□□□ 0.66
LDB3-203ENST00000372056 ARHGEF5Q12774 1597 aa19.13■□□□□ 0.65
LDB3-203ENST00000372056 DAPK1P53355 1430 aa19.13■□□□□ 0.65
LDB3-203ENST00000372056 ZNF777Q9ULD5 760 aaPredicted RBP19.12■□□□□ 0.65
LDB3-203ENST00000372056 TSPY4P0CV99 314 aa19.11■□□□□ 0.65
LDB3-203ENST00000372056 TSPY10P0CW01 314 aa19.11■□□□□ 0.65
LDB3-203ENST00000372056 GLI2P10070 1586 aa19.11■□□□□ 0.65
LDB3-203ENST00000372056 HFM1A2PYH4 1435 aa19.11■□□□□ 0.65
LDB3-203ENST00000372056 SHANK2Q9UPX8 1470 aa19.11■□□□□ 0.65
LDB3-203ENST00000372056 PTPRKQ15262 1439 aa19.1■□□□□ 0.65
LDB3-203ENST00000372056 CFAP74Q9C0B2 1584 aa19.1■□□□□ 0.65
LDB3-203ENST00000372056 ABCC5O15440 1437 aa19.09■□□□□ 0.65
LDB3-203ENST00000372056 SAMD9LQ8IVG5 1584 aa19.07■□□□□ 0.64
LDB3-203ENST00000372056 CD109Q6YHK3 1445 aa19.07■□□□□ 0.64
LDB3-203ENST00000372056 ZNF644Q9H582 1327 aaPredicted RBP19.07■□□□□ 0.64
LDB3-203ENST00000372056 CCDC141Q6ZP82 1450 aa19.06■□□□□ 0.64
LDB3-203ENST00000372056 ADGRL2O95490 1459 aa19.06■□□□□ 0.64
LDB3-203ENST00000372056 ANKRD30AQ9BXX3 1397 aa19.06■□□□□ 0.64
LDB3-203ENST00000372056 FANCAO15360 1455 aa19.05■□□□□ 0.64
LDB3-203ENST00000372056 MBD5Q9P267 1494 aa19.05■□□□□ 0.64
LDB3-203ENST00000372056 CROCC2H7BZ55 1655 aa19.04■□□□□ 0.64
LDB3-203ENST00000372056 ADGBQ8N7X0 1667 aa19.03■□□□□ 0.64
LDB3-203ENST00000372056 NEO1Q92859 1461 aa19.02■□□□□ 0.64
LDB3-203ENST00000372056 NAIPQ13075 1403 aa19.02■□□□□ 0.64
LDB3-203ENST00000372056 MAST1Q9Y2H9 1570 aa19.01■□□□□ 0.63
LDB3-203ENST00000372056 ABCC1P33527 1531 aa19.01■□□□□ 0.63
LDB3-203ENST00000372056 GCC2Q8IWJ2 1684 aa19.01■□□□□ 0.63
LDB3-203ENST00000372056 NCOA1Q15788 1441 aa19■□□□□ 0.63
LDB3-203ENST00000372056 HNRNPMP52272 730 aaKnown RBP eCLIP19■□□□□ 0.63
LDB3-203ENST00000372056 C9orf84Q5VXU9 1444 aa18.99■□□□□ 0.63
LDB3-203ENST00000372056 MAP3K4Q9Y6R4 1608 aa18.99■□□□□ 0.63
LDB3-203ENST00000372056 SYCP2Q9BX26 1530 aa18.98■□□□□ 0.63
LDB3-203ENST00000372056 RTEL1-TNFRSF6BF6WH68 1400 aa18.98■□□□□ 0.63
LDB3-203ENST00000372056 CHIC2Q9UKJ5 165 aa18.97■□□□□ 0.63
LDB3-203ENST00000372056 DIP2BQ9P265 1576 aa18.96■□□□□ 0.63
LDB3-203ENST00000372056 ADGRL1O94910 1474 aa18.96■□□□□ 0.63
LDB3-203ENST00000372056 TEX14Q8IWB6 1497 aa18.96■□□□□ 0.63
LDB3-203ENST00000372056 FAM69CQ0P6D2 419 aa18.94■□□□□ 0.62
LDB3-203ENST00000372056 RRP7BPQ9NSQ0 103 aa18.93■□□□□ 0.62
LDB3-203ENST00000372056 SCAPERQ9BY12 1400 aa18.92■□□□□ 0.62
LDB3-203ENST00000372056 ZNF518AQ6AHZ1 1483 aa18.92■□□□□ 0.62
LDB3-203ENST00000372056 PLXNC1O60486 1568 aa18.92■□□□□ 0.62
LDB3-203ENST00000372056 ARHGEF12Q9NZN5 1544 aa18.9■□□□□ 0.62
LDB3-203ENST00000372056 SPAG9O60271 1321 aaKnown RBP18.9■□□□□ 0.62
LDB3-203ENST00000372056 ZNF316A6NFI3 1004 aaPredicted RBP18.88■□□□□ 0.61
LDB3-203ENST00000372056 ANKRD50Q9ULJ7 1429 aa18.88■□□□□ 0.61
LDB3-203ENST00000372056 KIF15Q9NS87 1388 aa18.88■□□□□ 0.61
LDB3-203ENST00000372056 TRAPPC8Q9Y2L5 1435 aa18.87■□□□□ 0.61
LDB3-203ENST00000372056 DUOX2Q9NRD8 1548 aa18.86■□□□□ 0.61
LDB3-203ENST00000372056 DENND4BO75064 1496 aaPredicted RBP18.86■□□□□ 0.61
LDB3-203ENST00000372056 POGZQ7Z3K3 1410 aa18.84■□□□□ 0.61
LDB3-203ENST00000372056 ERBINQ96RT1 1412 aa18.84■□□□□ 0.61
LDB3-203ENST00000372056 MLH3Q9UHC1 1453 aa18.83■□□□□ 0.61
LDB3-203ENST00000372056 AFAP1Q8N556 730 aa18.82■□□□□ 0.6
LDB3-203ENST00000372056 KDM5CP41229 1560 aa18.82■□□□□ 0.6
LDB3-203ENST00000372056 KDM6BO15054 1643 aa18.82■□□□□ 0.6
LDB3-203ENST00000372056 KIF13AQ9H1H9 1805 aa18.81■□□□□ 0.6
LDB3-203ENST00000372056 ATP7AQ04656 1500 aa18.81■□□□□ 0.6
LDB3-203ENST00000372056 INO80Q9ULG1 1556 aaPredicted RBP18.81■□□□□ 0.6
LDB3-203ENST00000372056 TRIM52Q96A61 297 aa18.8■□□□□ 0.6
LDB3-203ENST00000372056 ZFYVE16Q7Z3T8 1539 aa18.8■□□□□ 0.6
LDB3-203ENST00000372056 SIN3AQ96ST3 1273 aa18.78■□□□□ 0.6
LDB3-203ENST00000372056 TIMELESSQ9UNS1 1208 aa18.78■□□□□ 0.6
LDB3-203ENST00000372056 MAGI2Q86UL8 1455 aa18.78■□□□□ 0.6
LDB3-203ENST00000372056 DIEXFQ68CQ4 756 aaKnown RBP18.77■□□□□ 0.6
LDB3-203ENST00000372056 MYT1LQ9UL68 1186 aa18.77■□□□□ 0.6
LDB3-203ENST00000372056 HECW2Q9P2P5 1572 aa18.76■□□□□ 0.59
LDB3-203ENST00000372056 KDM5DQ9BY66 1539 aa18.76■□□□□ 0.59
LDB3-203ENST00000372056 DHX29Q7Z478 1369 aaKnown RBP18.75■□□□□ 0.59
LDB3-203ENST00000372056 PPRC1Q5VV67 1664 aaKnown RBP18.75■□□□□ 0.59
LDB3-203ENST00000372056 NEUROD1Q13562 356 aa18.74■□□□□ 0.59
LDB3-203ENST00000372056 MPHOSPH9Q99550 1183 aa18.74■□□□□ 0.59
LDB3-203ENST00000372056 EIF2AK4Q9P2K8 1649 aaKnown RBP18.74■□□□□ 0.59
LDB3-203ENST00000372056 ZMYM4Q5VZL5 1548 aa18.73■□□□□ 0.59
LDB3-203ENST00000372056 RICTORQ6R327 1708 aa18.73■□□□□ 0.59
LDB3-203ENST00000372056 KIDINS220Q9ULH0 1771 aa18.72■□□□□ 0.59
LDB3-203ENST00000372056 SLC4A1APQ9BWU0 796 aaKnown RBP18.71■□□□□ 0.59
LDB3-203ENST00000372056 TSPOAP1O95153 1857 aa18.71■□□□□ 0.59
LDB3-203ENST00000372056 UNC13BO14795 1591 aa18.71■□□□□ 0.58
LDB3-203ENST00000372056 NUP155O75694 1391 aa18.7■□□□□ 0.58
LDB3-203ENST00000372056 A2MP01023 1474 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms