RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 AKNAQ7Z591 1439 aa15.13■□□□□ 0.01
PTPN1-201ENST00000371621 PDE4CQ08493 712 aa15.13■□□□□ 0.01
PTPN1-201ENST00000371621 RUSC2Q8N2Y8 1516 aa15.12■□□□□ 0.01
PTPN1-201ENST00000371621 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
PTPN1-201ENST00000371621 BACH2Q9BYV9 841 aa15.12■□□□□ 0.01
PTPN1-201ENST00000371621 FOXD4L1Q9NU39 408 aa15.11■□□□□ 0.01
PTPN1-201ENST00000371621 BICRAQ9NZM4 1560 aa15.11■□□□□ 0.01
PTPN1-201ENST00000371621 C11orf95C9JLR9 678 aaPredicted RBP15.1■□□□□ 0.01
PTPN1-201ENST00000371621 FOXD1Q16676 465 aa15.1■□□□□ 0.01
PTPN1-201ENST00000371621 PRDM10Q9NQV6 1147 aa15.09■□□□□ 0.01
PTPN1-201ENST00000371621 RRP1P56182 461 aaKnown RBP15.09■□□□□ 0.01
PTPN1-201ENST00000371621 HSP90AB1P08238 724 aaKnown RBP15.09■□□□□ 0.01
PTPN1-201ENST00000371621 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0.01
PTPN1-201ENST00000371621 SETD5Q9C0A6 1442 aa15.08■□□□□ 0.01
PTPN1-201ENST00000371621 NEUROD2Q15784 382 aa15.08■□□□□ 0
PTPN1-201ENST00000371621 ZHX1Q9UKY1 873 aaPredicted RBP15.08■□□□□ 0
PTPN1-201ENST00000371621 FAM161AQ3B820 660 aa15.08■□□□□ 0
PTPN1-201ENST00000371621 CRBNQ96SW2 442 aa15.08■□□□□ 0
PTPN1-201ENST00000371621 R3HCC1Q9Y3T6 440 aaKnown RBP15.08■□□□□ 0
PTPN1-201ENST00000371621 CC2D1BQ5T0F9 858 aaKnown RBP15.07■□□□□ 0
PTPN1-201ENST00000371621 MS4A1P11836 297 aa15.06■□□□□ 0
PTPN1-201ENST00000371621 ZNF777Q9ULD5 760 aaPredicted RBP15.05■□□□□ 0
PTPN1-201ENST00000371621 HSCBQ8IWL3 235 aa15.05■□□□□ -0
PTPN1-201ENST00000371621 WASHC2AQ641Q2 1341 aa15.04■□□□□ -0
PTPN1-201ENST00000371621 KIAA1211Q6ZU35 1233 aa15.03■□□□□ -0
PTPN1-201ENST00000371621 MFAP1P55081 439 aaKnown RBP15.01□□□□□ -0.01
PTPN1-201ENST00000371621 ESPNB1AK53 854 aa15.01□□□□□ -0.01
PTPN1-201ENST00000371621 MTUS2Q5JR59 1369 aa15□□□□□ -0.01
PTPN1-201ENST00000371621 RRAGDQ9NQL2 400 aaPredicted RBP15□□□□□ -0.01
PTPN1-201ENST00000371621 DCAF11Q8TEB1 546 aa15□□□□□ -0.01
PTPN1-201ENST00000371621 BBXQ8WY36 941 aaPredicted RBP14.98□□□□□ -0.01
PTPN1-201ENST00000371621 TNNT3P45378 269 aaPredicted RBP14.96□□□□□ -0.01
PTPN1-201ENST00000371621 CARD11Q9BXL7 1154 aa14.96□□□□□ -0.01
PTPN1-201ENST00000371621 WASHC2CQ9Y4E1 1318 aa14.96□□□□□ -0.01
PTPN1-201ENST00000371621 PANK2Q9BZ23 570 aa14.96□□□□□ -0.01
PTPN1-201ENST00000371621 GBP4Q96PP9 640 aa14.95□□□□□ -0.02
PTPN1-201ENST00000371621 ZNF771Q7L3S4 317 aaPredicted RBP14.95□□□□□ -0.02
PTPN1-201ENST00000371621 TRAK2O60296 914 aa14.94□□□□□ -0.02
PTPN1-201ENST00000371621 BCL11BQ9C0K0 894 aaPredicted RBP14.94□□□□□ -0.02
PTPN1-201ENST00000371621 MRE11P49959 708 aa14.94□□□□□ -0.02
PTPN1-201ENST00000371621 L3MBTL2Q969R5 705 aa14.94□□□□□ -0.02
PTPN1-201ENST00000371621 CDCA7LQ96GN5 454 aa14.93□□□□□ -0.02
PTPN1-201ENST00000371621 TPM2P07951 284 aa14.93□□□□□ -0.02
PTPN1-201ENST00000371621 DDX49Q9Y6V7 483 aaKnown RBP14.92□□□□□ -0.02
PTPN1-201ENST00000371621 PDCL3Q9H2J4 239 aa14.92□□□□□ -0.02
PTPN1-201ENST00000371621 RGL3Q3MIN7 710 aa14.91□□□□□ -0.02
PTPN1-201ENST00000371621 CENPQQ7L2Z9 268 aaPredicted RBP14.91□□□□□ -0.02
PTPN1-201ENST00000371621 CHAF1AQ13111 956 aaPredicted RBP14.91□□□□□ -0.02
PTPN1-201ENST00000371621 CLUAP1Q96AJ1 413 aa14.91□□□□□ -0.02
PTPN1-201ENST00000371621 MPNDQ8N594 471 aa14.9□□□□□ -0.02
PTPN1-201ENST00000371621 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-201ENST00000371621 KIAA2012Q0VF49 1180 aa14.89□□□□□ -0.03
PTPN1-201ENST00000371621 FOXD4L5Q5VV16 416 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-201ENST00000371621 PLCD3Q8N3E9 789 aa14.89□□□□□ -0.03
PTPN1-201ENST00000371621 FOXD4L4Q8WXT5 416 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-201ENST00000371621 CALD1Q05682 793 aaKnown RBP14.88□□□□□ -0.03
PTPN1-201ENST00000371621 FTSJ3Q8IY81 847 aaKnown RBP14.88□□□□□ -0.03
PTPN1-201ENST00000371621 GRPEL1Q9HAV7 217 aa14.87□□□□□ -0.03
PTPN1-201ENST00000371621 DDX11L8A8MPP1 907 aa14.86□□□□□ -0.03
PTPN1-201ENST00000371621 XRCC6P12956 609 aaKnown RBP eCLIP14.85□□□□□ -0.03
PTPN1-201ENST00000371621 EIF4G1Q04637 1599 aaKnown RBP14.85□□□□□ -0.03
PTPN1-201ENST00000371621 NASPP49321 788 aaPredicted RBP14.84□□□□□ -0.03
PTPN1-201ENST00000371621 SYNJ1O43426 1573 aa14.84□□□□□ -0.03
PTPN1-201ENST00000371621 FOXD4L6Q3SYB3 417 aaPredicted RBP14.84□□□□□ -0.03
PTPN1-201ENST00000371621 FOXD4L3Q6VB84 417 aaPredicted RBP14.84□□□□□ -0.03
PTPN1-201ENST00000371621 UQCRHLA0A096LP55 91 aa14.83□□□□□ -0.03
PTPN1-201ENST00000371621 UQCRHP07919 91 aa14.83□□□□□ -0.03
PTPN1-201ENST00000371621 CLCN1P35523 988 aa14.83□□□□□ -0.03
PTPN1-201ENST00000371621 MAP7D2Q96T17 732 aa14.83□□□□□ -0.04
PTPN1-201ENST00000371621 CHMP5Q9NZZ3 219 aa14.83□□□□□ -0.04
PTPN1-201ENST00000371621 RAPGEF2Q9Y4G8 1499 aa14.82□□□□□ -0.04
PTPN1-201ENST00000371621 CBX1P83916 185 aa14.82□□□□□ -0.04
PTPN1-201ENST00000371621 WDR97A6NE52 1622 aa14.82□□□□□ -0.04
PTPN1-201ENST00000371621 COG6Q9Y2V7 657 aa14.81□□□□□ -0.04
PTPN1-201ENST00000371621 RNF214Q8ND24 703 aa14.81□□□□□ -0.04
PTPN1-201ENST00000371621 CCDC146Q8IYE0 955 aa14.8□□□□□ -0.04
PTPN1-201ENST00000371621 BCL2L13Q9BXK5 485 aa14.8□□□□□ -0.04
PTPN1-201ENST00000371621 MCM4P33991 863 aa14.8□□□□□ -0.04
PTPN1-201ENST00000371621 CHMP4BQ9H444 224 aaKnown RBP14.8□□□□□ -0.04
PTPN1-201ENST00000371621 KNSTRNQ9Y448 316 aa14.79□□□□□ -0.04
PTPN1-201ENST00000371621 KTN1Q86UP2 1357 aaKnown RBP14.79□□□□□ -0.04
PTPN1-201ENST00000371621 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.79□□□□□ -0.049e-7■■■□□ 17.6
PTPN1-201ENST00000371621 E9PSI1 815 aa14.78□□□□□ -0.04
PTPN1-201ENST00000371621 IGSF3O75054 1194 aa14.78□□□□□ -0.04
PTPN1-201ENST00000371621 AEBP1Q8IUX7 1158 aa14.78□□□□□ -0.04
PTPN1-201ENST00000371621 CHMP4AQ9BY43 222 aa14.78□□□□□ -0.04
PTPN1-201ENST00000371621 VGLL3A8MV65 326 aa14.78□□□□□ -0.04
PTPN1-201ENST00000371621 XPCQ01831 940 aaPredicted RBP14.78□□□□□ -0.04
PTPN1-201ENST00000371621 PDE3BQ13370 1112 aa14.77□□□□□ -0.04
PTPN1-201ENST00000371621 CGNQ9P2M7 1197 aaKnown RBP14.77□□□□□ -0.05
PTPN1-201ENST00000371621 DRC7Q8IY82 874 aa14.76□□□□□ -0.05
PTPN1-201ENST00000371621 PDIA4P13667 645 aaKnown RBP14.76□□□□□ -0.05
PTPN1-201ENST00000371621 KIF7Q2M1P5 1343 aa14.76□□□□□ -0.05
PTPN1-201ENST00000371621 GOLGA2Q08379 1002 aa14.75□□□□□ -0.05
PTPN1-201ENST00000371621 C20orf194Q5TEA3 1177 aa14.75□□□□□ -0.05
PTPN1-201ENST00000371621 NLRP13Q86W25 1043 aa14.75□□□□□ -0.05
PTPN1-201ENST00000371621 KIF27Q86VH2 1401 aa14.74□□□□□ -0.05
PTPN1-201ENST00000371621 MPHOSPH9Q99550 1183 aa14.74□□□□□ -0.05
PTPN1-201ENST00000371621 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
PTPN1-201ENST00000371621 NCAPD3P42695 1498 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms