RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ITSN2Q9NZM3 1697 aa23.34■■□□□ 1.33
COL9A1-204ENST00000370496 PHLDB1Q86UU1 1377 aa23.32■■□□□ 1.32
COL9A1-204ENST00000370496 COL17A1Q9UMD9 1497 aaPredicted RBP23.3■■□□□ 1.32
COL9A1-204ENST00000370496 AKNAQ7Z591 1439 aa23.29■■□□□ 1.32
COL9A1-204ENST00000370496 NCOA2Q15596 1464 aa23.28■■□□□ 1.32
COL9A1-204ENST00000370496 CCNB3Q8WWL7 1395 aa23.28■■□□□ 1.32
COL9A1-204ENST00000370496 ADGRL1O94910 1474 aa23.28■■□□□ 1.32
COL9A1-204ENST00000370496 GPATCH8Q9UKJ3 1502 aaKnown RBP23.26■■□□□ 1.31
COL9A1-204ENST00000370496 FRMPD1Q5SYB0 1578 aa23.25■■□□□ 1.31
COL9A1-204ENST00000370496 EFCAB2Q5VUJ9 269 aa23.25■■□□□ 1.31
COL9A1-204ENST00000370496 RICTORQ6R327 1708 aa23.24■■□□□ 1.31
COL9A1-204ENST00000370496 ABCC1P33527 1531 aa23.23■■□□□ 1.31
COL9A1-204ENST00000370496 DENND4BO75064 1496 aaPredicted RBP23.22■■□□□ 1.31
COL9A1-204ENST00000370496 KANK4Q5T7N3 995 aaPredicted RBP23.22■■□□□ 1.31
COL9A1-204ENST00000370496 SAMD9LQ8IVG5 1584 aa23.21■■□□□ 1.31
COL9A1-204ENST00000370496 POGZQ7Z3K3 1410 aa23.18■■□□□ 1.3
COL9A1-204ENST00000370496 SCAPERQ9BY12 1400 aa23.18■■□□□ 1.3
COL9A1-204ENST00000370496 CFDP1Q9UEE9 299 aaPredicted RBP23.16■■□□□ 1.3
COL9A1-204ENST00000370496 SYCP2Q9BX26 1530 aa23.16■■□□□ 1.3
COL9A1-204ENST00000370496 RAPGEF3O95398 923 aa23.15■■□□□ 1.3
COL9A1-204ENST00000370496 ZMYM4Q5VZL5 1548 aa23.15■■□□□ 1.3
COL9A1-204ENST00000370496 ZNF777Q9ULD5 760 aaPredicted RBP23.14■■□□□ 1.3
COL9A1-204ENST00000370496 ZNF518AQ6AHZ1 1483 aa23.14■■□□□ 1.29
COL9A1-204ENST00000370496 PLEKHH2Q8IVE3 1493 aa23.13■■□□□ 1.29
COL9A1-204ENST00000370496 ARHGEF40Q8TER5 1519 aa23.12■■□□□ 1.29
COL9A1-204ENST00000370496 MYOM3Q5VTT5 1437 aa23.11■■□□□ 1.29
COL9A1-204ENST00000370496 KDM5CP41229 1560 aa23.11■■□□□ 1.29
COL9A1-204ENST00000370496 CAMSAP2Q08AD1 1489 aa23.1■■□□□ 1.29
COL9A1-204ENST00000370496 ARHGEF12Q9NZN5 1544 aa23.1■■□□□ 1.29
COL9A1-204ENST00000370496 HECW2Q9P2P5 1572 aa23.09■■□□□ 1.29
COL9A1-204ENST00000370496 ZFYVE16Q7Z3T8 1539 aa23.08■■□□□ 1.29
COL9A1-204ENST00000370496 KIAA1107Q9UPP5 1409 aa23.06■■□□□ 1.28
COL9A1-204ENST00000370496 TRAPPC8Q9Y2L5 1435 aa23.05■■□□□ 1.28
COL9A1-204ENST00000370496 MAGI2Q86UL8 1455 aa23.04■■□□□ 1.28
COL9A1-204ENST00000370496 MIA2Q96PC5 1412 aa23.04■■□□□ 1.28
COL9A1-204ENST00000370496 ZNF644Q9H582 1327 aaPredicted RBP23.02■■□□□ 1.28
COL9A1-204ENST00000370496 PTPN23Q9H3S7 1636 aa23.02■■□□□ 1.28
COL9A1-204ENST00000370496 FGD6Q6ZV73 1430 aa23■■□□□ 1.27
COL9A1-204ENST00000370496 YEATS2Q9ULM3 1422 aa23■■□□□ 1.27
COL9A1-204ENST00000370496 AFAP1Q8N556 730 aa23■■□□□ 1.27
COL9A1-204ENST00000370496 CCDC141Q6ZP82 1450 aa22.99■■□□□ 1.27
COL9A1-204ENST00000370496 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.27
COL9A1-204ENST00000370496 ARHGEF5Q12774 1597 aa22.98■■□□□ 1.27
COL9A1-204ENST00000370496 INO80Q9ULG1 1556 aaPredicted RBP22.98■■□□□ 1.27
COL9A1-204ENST00000370496 ABCA6Q8N139 1617 aa22.98■■□□□ 1.27
COL9A1-204ENST00000370496 MYT1LQ9UL68 1186 aa22.98■■□□□ 1.27
COL9A1-204ENST00000370496 MBD5Q9P267 1494 aa22.97■■□□□ 1.27
COL9A1-204ENST00000370496 MLH3Q9UHC1 1453 aa22.97■■□□□ 1.27
COL9A1-204ENST00000370496 DIP2CQ9Y2E4 1556 aa22.97■■□□□ 1.27
COL9A1-204ENST00000370496 KIDINS220Q9ULH0 1771 aa22.97■■□□□ 1.27
COL9A1-204ENST00000370496 ATP7AQ04656 1500 aa22.96■■□□□ 1.27
COL9A1-204ENST00000370496 PPARGC1BQ86YN6 1023 aaKnown RBP22.95■■□□□ 1.26
COL9A1-204ENST00000370496 CROCC2H7BZ55 1655 aa22.93■■□□□ 1.26
COL9A1-204ENST00000370496 TCOF1Q13428 1488 aaKnown RBP22.92■■□□□ 1.26
COL9A1-204ENST00000370496 C9orf84Q5VXU9 1444 aa22.92■■□□□ 1.26
COL9A1-204ENST00000370496 SPAG9O60271 1321 aaKnown RBP22.92■■□□□ 1.26
COL9A1-204ENST00000370496 ATP10AO60312 1499 aa22.9■■□□□ 1.26
COL9A1-204ENST00000370496 SIGLEC1Q9BZZ2 1709 aa22.9■■□□□ 1.26
COL9A1-204ENST00000370496 DNMT1P26358 1616 aaKnown RBP22.89■■□□□ 1.25
COL9A1-204ENST00000370496 REREQ9P2R6 1566 aa22.88■■□□□ 1.25
COL9A1-204ENST00000370496 ADGBQ8N7X0 1667 aa22.88■■□□□ 1.25
COL9A1-204ENST00000370496 RSPH4AQ5TD94 716 aa22.86■■□□□ 1.25
COL9A1-204ENST00000370496 MAST1Q9Y2H9 1570 aa22.86■■□□□ 1.25
COL9A1-204ENST00000370496 ARID4BQ4LE39 1312 aaPredicted RBP22.85■■□□□ 1.25
COL9A1-204ENST00000370496 BCORL1Q5H9F3 1711 aa22.85■■□□□ 1.25
COL9A1-204ENST00000370496 RTEL1-TNFRSF6BF6WH68 1400 aa22.84■■□□□ 1.25
COL9A1-204ENST00000370496 SHANK2Q9UPX8 1470 aa22.84■■□□□ 1.25
COL9A1-204ENST00000370496 DAPK1P53355 1430 aa22.82■■□□□ 1.24
COL9A1-204ENST00000370496 FAM50AQ14320 339 aaKnown RBP22.82■■□□□ 1.24
COL9A1-204ENST00000370496 PLXNC1O60486 1568 aa22.8■■□□□ 1.24
COL9A1-204ENST00000370496 TSPY4P0CV99 314 aa22.8■■□□□ 1.24
COL9A1-204ENST00000370496 TSPY10P0CW01 314 aa22.8■■□□□ 1.24
COL9A1-204ENST00000370496 ABCC5O15440 1437 aa22.79■■□□□ 1.24
COL9A1-204ENST00000370496 A2MP01023 1474 aa22.79■■□□□ 1.24
COL9A1-204ENST00000370496 ADAMTSL3P82987 1691 aa22.77■■□□□ 1.24
COL9A1-204ENST00000370496 AGLP35573 1532 aa22.77■■□□□ 1.24
COL9A1-204ENST00000370496 MADDQ8WXG6 1647 aa22.77■■□□□ 1.23
COL9A1-204ENST00000370496 FER1L4A9Z1Z3 1794 aa22.76■■□□□ 1.23
COL9A1-204ENST00000370496 RRBP1Q9P2E9 1410 aaKnown RBP22.73■■□□□ 1.23
COL9A1-204ENST00000370496 KDM4FA0A1W2PPD8 638 aa22.73■■□□□ 1.23
COL9A1-204ENST00000370496 RIMS1Q86UR5 1692 aaKnown RBP22.72■■□□□ 1.23
COL9A1-204ENST00000370496 MLECQ14165 292 aa22.71■■□□□ 1.23
COL9A1-204ENST00000370496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.69■■□□□ 1.22
COL9A1-204ENST00000370496 DUOX2Q9NRD8 1548 aa22.68■■□□□ 1.22
COL9A1-204ENST00000370496 EIF2AK4Q9P2K8 1649 aaKnown RBP22.68■■□□□ 1.22
COL9A1-204ENST00000370496 DHX29Q7Z478 1369 aaKnown RBP22.67■■□□□ 1.22
COL9A1-204ENST00000370496 ADGRL2O95490 1459 aa22.67■■□□□ 1.22
COL9A1-204ENST00000370496 KIF15Q9NS87 1388 aa22.67■■□□□ 1.22
COL9A1-204ENST00000370496 ANKRD30AQ9BXX3 1397 aa22.66■■□□□ 1.22
COL9A1-204ENST00000370496 CHIC2Q9UKJ5 165 aa22.64■■□□□ 1.22
COL9A1-204ENST00000370496 ERBINQ96RT1 1412 aa22.62■■□□□ 1.21
COL9A1-204ENST00000370496 ITGAEP38570 1179 aa22.62■■□□□ 1.21
COL9A1-204ENST00000370496 RNF17Q9BXT8 1623 aaKnown RBP22.61■■□□□ 1.21
COL9A1-204ENST00000370496 PTPRKQ15262 1439 aa22.61■■□□□ 1.21
COL9A1-204ENST00000370496 PTPRMP28827 1452 aa22.6■■□□□ 1.21
COL9A1-204ENST00000370496 NCOA1Q15788 1441 aa22.6■■□□□ 1.21
COL9A1-204ENST00000370496 RRP7BPQ9NSQ0 103 aa22.6■■□□□ 1.21
COL9A1-204ENST00000370496 CLTCQ00610 1675 aaKnown RBP22.59■■□□□ 1.21
COL9A1-204ENST00000370496 MROH2AA6NES4 1674 aa22.57■■□□□ 1.2
COL9A1-204ENST00000370496 KIF3BO15066 747 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms