RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ZNF644Q9H582 1327 aaPredicted RBP27.99■■■□□ 2.07
CLN3-204ENST00000357857 DNMT1P26358 1616 aaKnown RBP27.99■■■□□ 2.07
CLN3-204ENST00000357857 PTPRKQ15262 1439 aa27.98■■■□□ 2.07
CLN3-204ENST00000357857 ZNF777Q9ULD5 760 aaPredicted RBP27.96■■■□□ 2.07
CLN3-204ENST00000357857 ARHGAP5Q13017 1502 aa27.93■■■□□ 2.06
CLN3-204ENST00000357857 ABCA9Q8IUA7 1624 aa27.93■■■□□ 2.06
CLN3-204ENST00000357857 DAPK1P53355 1430 aa27.93■■■□□ 2.06
CLN3-204ENST00000357857 SETD5Q9C0A6 1442 aa27.91■■■□□ 2.06
CLN3-204ENST00000357857 SAMD9LQ8IVG5 1584 aa27.91■■■□□ 2.06
CLN3-204ENST00000357857 HRCP23327 699 aa27.91■■■□□ 2.06
CLN3-204ENST00000357857 ABCC5O15440 1437 aa27.9■■■□□ 2.06
CLN3-204ENST00000357857 PLCH2O75038 1416 aa27.9■■■□□ 2.06
CLN3-204ENST00000357857 CCER1Q8TC90 406 aaPredicted RBP27.89■■■□□ 2.05
CLN3-204ENST00000357857 CROCC2H7BZ55 1655 aa27.88■■■□□ 2.05
CLN3-204ENST00000357857 MAPKBP1O60336 1514 aa27.88■■■□□ 2.05
CLN3-204ENST00000357857 ARAP3Q8WWN8 1544 aa27.87■■■□□ 2.05
CLN3-204ENST00000357857 RAB3GAP2Q9H2M9 1393 aa27.86■■■□□ 2.05
CLN3-204ENST00000357857 HFM1A2PYH4 1435 aa27.85■■■□□ 2.05
CLN3-204ENST00000357857 ARHGEF5Q12774 1597 aa27.84■■■□□ 2.05
CLN3-204ENST00000357857 AKNAQ7Z591 1439 aa27.83■■■□□ 2.05
CLN3-204ENST00000357857 CHIC2Q9UKJ5 165 aa27.83■■■□□ 2.05
CLN3-204ENST00000357857 GCC2Q8IWJ2 1684 aa27.83■■■□□ 2.05
CLN3-204ENST00000357857 ADGBQ8N7X0 1667 aa27.82■■■□□ 2.04
CLN3-204ENST00000357857 PLEKHH2Q8IVE3 1493 aa27.81■■■□□ 2.04
CLN3-204ENST00000357857 EFCAB2Q5VUJ9 269 aa27.8■■■□□ 2.04
CLN3-204ENST00000357857 NAIPQ13075 1403 aa27.8■■■□□ 2.04
CLN3-204ENST00000357857 ROCK1Q13464 1354 aa27.79■■■□□ 2.04
CLN3-204ENST00000357857 MBD5Q9P267 1494 aa27.79■■■□□ 2.04
CLN3-204ENST00000357857 SYCP2Q9BX26 1530 aa27.78■■■□□ 2.04
CLN3-204ENST00000357857 SHANK2Q9UPX8 1470 aa27.77■■■□□ 2.04
CLN3-204ENST00000357857 KIAA1107Q9UPP5 1409 aa27.76■■■□□ 2.03
CLN3-204ENST00000357857 HNRNPMP52272 730 aaKnown RBP eCLIP27.76■■■□□ 2.03
CLN3-204ENST00000357857 RRP7BPQ9NSQ0 103 aa27.75■■■□□ 2.03
CLN3-204ENST00000357857 CCDC141Q6ZP82 1450 aa27.75■■■□□ 2.03
CLN3-204ENST00000357857 ABCC1P33527 1531 aa27.74■■■□□ 2.03
CLN3-204ENST00000357857 ZEB1P37275 1124 aaPredicted RBP27.74■■■□□ 2.03
CLN3-204ENST00000357857 RSPH4AQ5TD94 716 aa27.73■■■□□ 2.03
CLN3-204ENST00000357857 ADGRL2O95490 1459 aa27.73■■■□□ 2.03
CLN3-204ENST00000357857 FANCAO15360 1455 aa27.72■■■□□ 2.03
CLN3-204ENST00000357857 DHX57Q6P158 1386 aaKnown RBP27.71■■■□□ 2.03
CLN3-204ENST00000357857 C9orf84Q5VXU9 1444 aa27.7■■■□□ 2.03
CLN3-204ENST00000357857 CD109Q6YHK3 1445 aa27.7■■■□□ 2.02
CLN3-204ENST00000357857 ARHGEF12Q9NZN5 1544 aa27.68■■■□□ 2.02
CLN3-204ENST00000357857 TSPY4P0CV99 314 aa27.68■■■□□ 2.02
CLN3-204ENST00000357857 TSPY10P0CW01 314 aa27.68■■■□□ 2.02
CLN3-204ENST00000357857 NCOA1Q15788 1441 aa27.68■■■□□ 2.02
CLN3-204ENST00000357857 GLI2P10070 1586 aa27.67■■■□□ 2.02
CLN3-204ENST00000357857 ANKRD30AQ9BXX3 1397 aa27.67■■■□□ 2.02
CLN3-204ENST00000357857 CFAP74Q9C0B2 1584 aa27.67■■■□□ 2.02
CLN3-204ENST00000357857 MAST1Q9Y2H9 1570 aa27.66■■■□□ 2.02
CLN3-204ENST00000357857 MAP3K4Q9Y6R4 1608 aa27.65■■■□□ 2.02
CLN3-204ENST00000357857 KDM6BO15054 1643 aa27.64■■■□□ 2.02
CLN3-204ENST00000357857 DIP2BQ9P265 1576 aa27.63■■■□□ 2.01
CLN3-204ENST00000357857 ADGRL1O94910 1474 aa27.59■■■□□ 2.01
CLN3-204ENST00000357857 TRAPPC8Q9Y2L5 1435 aa27.58■■■□□ 2.01
CLN3-204ENST00000357857 CLSPNQ9HAW4 1339 aa27.57■■■□□ 2
CLN3-204ENST00000357857 PLXNC1O60486 1568 aa27.55■■■□□ 2
CLN3-204ENST00000357857 SCAPERQ9BY12 1400 aa27.54■■■□□ 2
CLN3-204ENST00000357857 ACIN1Q9UKV3 1341 aaKnown RBP27.53■■■□□ 2
CLN3-204ENST00000357857 FAM69CQ0P6D2 419 aa27.53■■■□□ 2
CLN3-204ENST00000357857 KIF15Q9NS87 1388 aa27.52■■■□□ 2
CLN3-204ENST00000357857 NEO1Q92859 1461 aa27.52■■■□□ 2
CLN3-204ENST00000357857 ANKRD50Q9ULJ7 1429 aa27.5■■□□□ 1.99
CLN3-204ENST00000357857 KIF13AQ9H1H9 1805 aa27.49■■□□□ 1.99
CLN3-204ENST00000357857 AFAP1Q8N556 730 aa27.47■■□□□ 1.99
CLN3-204ENST00000357857 RTEL1-TNFRSF6BF6WH68 1400 aa27.47■■□□□ 1.99
CLN3-204ENST00000357857 SPAG9O60271 1321 aaKnown RBP27.47■■□□□ 1.99
CLN3-204ENST00000357857 TRIM52Q96A61 297 aa27.47■■□□□ 1.99
CLN3-204ENST00000357857 TSPOAP1O95153 1857 aa27.46■■□□□ 1.99
CLN3-204ENST00000357857 ZFYVE16Q7Z3T8 1539 aa27.46■■□□□ 1.99
CLN3-204ENST00000357857 INO80Q9ULG1 1556 aaPredicted RBP27.45■■□□□ 1.99
CLN3-204ENST00000357857 ZNF518AQ6AHZ1 1483 aa27.43■■□□□ 1.98
CLN3-204ENST00000357857 PPRC1Q5VV67 1664 aaKnown RBP27.43■■□□□ 1.98
CLN3-204ENST00000357857 ATP7AQ04656 1500 aa27.43■■□□□ 1.98
CLN3-204ENST00000357857 DUOX2Q9NRD8 1548 aa27.43■■□□□ 1.98
CLN3-204ENST00000357857 POGZQ7Z3K3 1410 aa27.41■■□□□ 1.98
CLN3-204ENST00000357857 KDM5CP41229 1560 aa27.39■■□□□ 1.98
CLN3-204ENST00000357857 TEX14Q8IWB6 1497 aa27.38■■□□□ 1.97
CLN3-204ENST00000357857 DENND4BO75064 1496 aaPredicted RBP27.36■■□□□ 1.97
CLN3-204ENST00000357857 KIDINS220Q9ULH0 1771 aa27.36■■□□□ 1.97
CLN3-204ENST00000357857 ERBINQ96RT1 1412 aa27.35■■□□□ 1.97
CLN3-204ENST00000357857 RICTORQ6R327 1708 aa27.34■■□□□ 1.97
CLN3-204ENST00000357857 MPHOSPH9Q99550 1183 aa27.34■■□□□ 1.97
CLN3-204ENST00000357857 HECW2Q9P2P5 1572 aa27.33■■□□□ 1.97
CLN3-204ENST00000357857 KDM5DQ9BY66 1539 aa27.32■■□□□ 1.96
CLN3-204ENST00000357857 PZPP20742 1482 aa27.32■■□□□ 1.96
CLN3-204ENST00000357857 MYT1LQ9UL68 1186 aa27.32■■□□□ 1.96
CLN3-204ENST00000357857 TRHP20396 242 aaPredicted RBP27.31■■□□□ 1.96
CLN3-204ENST00000357857 UNC13BO14795 1591 aa27.31■■□□□ 1.96
CLN3-204ENST00000357857 MLH3Q9UHC1 1453 aa27.3■■□□□ 1.96
CLN3-204ENST00000357857 SLC4A1APQ9BWU0 796 aaKnown RBP27.27■■□□□ 1.96
CLN3-204ENST00000357857 NUP155O75694 1391 aa27.27■■□□□ 1.96
CLN3-204ENST00000357857 RAPGEF3O95398 923 aa27.26■■□□□ 1.95
CLN3-204ENST00000357857 FRMPD1Q5SYB0 1578 aa27.25■■□□□ 1.95
CLN3-204ENST00000357857 EIF2AK4Q9P2K8 1649 aaKnown RBP27.23■■□□□ 1.95
CLN3-204ENST00000357857 SIN3AQ96ST3 1273 aa27.22■■□□□ 1.95
CLN3-204ENST00000357857 MAGI2Q86UL8 1455 aa27.21■■□□□ 1.95
CLN3-204ENST00000357857 ABCA6Q8N139 1617 aa27.21■■□□□ 1.95
CLN3-204ENST00000357857 DHX29Q7Z478 1369 aaKnown RBP27.21■■□□□ 1.95
CLN3-204ENST00000357857 IQGAP3Q86VI3 1631 aa27.2■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms