RNA–Protein interactions for RNA: ENST00000357654.7

BRCA1-203, Transcript of BRCA1, DNA repair associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BRCA1, Length 7,094 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-203ENST00000357654 DDX10Q13206 875 aaKnown RBP7.47□□□□□ -1.21
BRCA1-203ENST00000357654 GORABQ5T7V8 394 aa7.47□□□□□ -1.21
BRCA1-203ENST00000357654 L1TD1Q5T7N2 865 aaKnown RBP7.47□□□□□ -1.21
BRCA1-203ENST00000357654 SPRYD3Q8NCJ5 442 aa7.47□□□□□ -1.21
BRCA1-203ENST00000357654 CFAP44Q96MT7 982 aa7.47□□□□□ -1.21
BRCA1-203ENST00000357654 TRIM34Q9BYJ4 488 aa7.47□□□□□ -1.21
BRCA1-203ENST00000357654 TOMM22Q9NS69 142 aa7.47□□□□□ -1.21
BRCA1-203ENST00000357654 NRDCO43847 1150 aa7.46□□□□□ -1.22
BRCA1-203ENST00000357654 NAP1L5Q96NT1 182 aaPredicted RBP7.46□□□□□ -1.22
BRCA1-203ENST00000357654 HSP90AB1P08238 724 aaKnown RBP7.46□□□□□ -1.22
BRCA1-203ENST00000357654 PAF1Q8N7H5 531 aa7.46□□□□□ -1.22
BRCA1-203ENST00000357654 IBSPP21815 317 aaPredicted RBP7.45□□□□□ -1.22
BRCA1-203ENST00000357654 AK7Q96M32 723 aa7.45□□□□□ -1.22
BRCA1-203ENST00000357654 MRS2Q9HD23 443 aa7.44□□□□□ -1.22
BRCA1-203ENST00000357654 PES1O00541 588 aaKnown RBP7.43□□□□□ -1.22
BRCA1-203ENST00000357654 RTF1Q92541 710 aaKnown RBP7.42□□□□□ -1.22
BRCA1-203ENST00000357654 RTN4Q9NQC3 1192 aaKnown RBP7.42□□□□□ -1.22
BRCA1-203ENST00000357654 STK26Q9P289 416 aa7.41□□□□□ -1.22
BRCA1-203ENST00000357654 RGS3P49796 1198 aa7.4□□□□□ -1.22
BRCA1-203ENST00000357654 CCAR1Q8IX12 1150 aaKnown RBP7.4□□□□□ -1.22
BRCA1-203ENST00000357654 EVA1CP58658 441 aa7.4□□□□□ -1.23
BRCA1-203ENST00000357654 SRPK2P78362 688 aaKnown RBP7.39□□□□□ -1.23
BRCA1-203ENST00000357654 SYTL4Q96C24 671 aaPredicted RBP7.39□□□□□ -1.23
BRCA1-203ENST00000357654 SLC4A3P48751 1232 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 PPP4R2Q9NY27 417 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 PLCD3Q8N3E9 789 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 RRP7BPQ9NSQ0 103 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 NUDCQ9Y266 331 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 KNSTRNQ9Y448 316 aa7.39□□□□□ -1.23
BRCA1-203ENST00000357654 PAXIP1Q6ZW49 1069 aaPredicted RBP7.38□□□□□ -1.23
BRCA1-203ENST00000357654 CC2D1BQ5T0F9 858 aaKnown RBP7.38□□□□□ -1.23
BRCA1-203ENST00000357654 LTV1Q96GA3 475 aaPredicted RBP7.38□□□□□ -1.23
BRCA1-203ENST00000357654 CCDC97Q96F63 343 aaPredicted RBP7.37□□□□□ -1.23
BRCA1-203ENST00000357654 ACIN1Q9UKV3 1341 aaKnown RBP7.37□□□□□ -1.23
BRCA1-203ENST00000357654 TMEM132AQ24JP5 1023 aa7.37□□□□□ -1.23
BRCA1-203ENST00000357654 DHX16O60231 1041 aaKnown RBP7.37□□□□□ -1.23
BRCA1-203ENST00000357654 NUTM2FA1L443 756 aa7.36□□□□□ -1.23
BRCA1-203ENST00000357654 DDRGK1Q96HY6 314 aa7.36□□□□□ -1.23
BRCA1-203ENST00000357654 MCCP23508 829 aa7.36□□□□□ -1.23
BRCA1-203ENST00000357654 NOL8Q76FK4 1167 aaKnown RBP7.36□□□□□ -1.23
BRCA1-203ENST00000357654 SPDYE4A6NLX3 237 aa7.35□□□□□ -1.23
BRCA1-203ENST00000357654 KIAA1211Q6ZU35 1233 aa7.35□□□□□ -1.23
BRCA1-203ENST00000357654 NGEFQ8N5V2 710 aa7.35□□□□□ -1.23
BRCA1-203ENST00000357654 CCDC43Q96MW1 224 aaKnown RBP7.35□□□□□ -1.23
BRCA1-203ENST00000357654 SF3B2Q13435 895 aaKnown RBP7.34□□□□□ -1.23
BRCA1-203ENST00000357654 MYCNP04198 464 aaPredicted RBP7.33□□□□□ -1.24
BRCA1-203ENST00000357654 NOL10Q9BSC4 688 aaKnown RBP7.33□□□□□ -1.24
BRCA1-203ENST00000357654 TPD52L1Q16890 204 aaPredicted RBP7.33□□□□□ -1.24
BRCA1-203ENST00000357654 GOLGA6L1Q8N7Z2 621 aa7.33□□□□□ -1.24
BRCA1-203ENST00000357654 MTMR7Q9Y216 660 aa7.32□□□□□ -1.24
BRCA1-203ENST00000357654 HDGFP51858 240 aaKnown RBP7.32□□□□□ -1.24
BRCA1-203ENST00000357654 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.31□□□□□ -1.24
BRCA1-203ENST00000357654 R3HCC1Q9Y3T6 440 aaKnown RBP7.31□□□□□ -1.24
BRCA1-203ENST00000357654 ZFYVE27Q5T4F4 411 aa7.31□□□□□ -1.24
BRCA1-203ENST00000357654 PCMTD1Q96MG8 357 aaPredicted RBP7.31□□□□□ -1.24
BRCA1-203ENST00000357654 TNNT3P45378 269 aaPredicted RBP7.31□□□□□ -1.24
BRCA1-203ENST00000357654 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.31□□□□□ -1.24
BRCA1-203ENST00000357654 TPM4P67936 248 aa7.31□□□□□ -1.24
BRCA1-203ENST00000357654 FYB1O15117 783 aa7.3□□□□□ -1.24
BRCA1-203ENST00000357654 EIF4G1Q04637 1599 aaKnown RBP7.3□□□□□ -1.24
BRCA1-203ENST00000357654 NUTM2DQ5VT03 806 aaPredicted RBP7.3□□□□□ -1.24
BRCA1-203ENST00000357654 WWC2Q6AWC2 1192 aa7.3□□□□□ -1.24
BRCA1-203ENST00000357654 GGT6Q6P531 493 aa7.3□□□□□ -1.24
BRCA1-203ENST00000357654 TRIM6-TRIM34B2RNG4 842 aa7.3□□□□□ -1.24
BRCA1-203ENST00000357654 MSNP26038 577 aaKnown RBP7.3□□□□□ -1.24
BRCA1-203ENST00000357654 CHMP4BP1P59074 171 aa7.3□□□□□ -1.24
BRCA1-203ENST00000357654 PLEKHD1A6NEE1 506 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 VPS37DQ86XT2 251 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 HSCBQ8IWL3 235 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 AMOTL1Q8IY63 956 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 TPM3P06753 285 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 ODF2Q5BJF6 829 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 CCAR2Q8N163 923 aaKnown RBP7.29□□□□□ -1.24
BRCA1-203ENST00000357654 SLC4A10Q6U841 1118 aa7.29□□□□□ -1.24
BRCA1-203ENST00000357654 FOXD4L5Q5VV16 416 aaPredicted RBP7.28□□□□□ -1.24
BRCA1-203ENST00000357654 B4GALNT3Q6L9W6 998 aa7.28□□□□□ -1.24
BRCA1-203ENST00000357654 FOXD4L4Q8WXT5 416 aaPredicted RBP7.28□□□□□ -1.24
BRCA1-203ENST00000357654 IKQ13123 557 aaPredicted RBP7.28□□□□□ -1.24
BRCA1-203ENST00000357654 CT47A1Q5JQC4 288 aaPredicted RBP7.28□□□□□ -1.24
BRCA1-203ENST00000357654 RRP12Q5JTH9 1297 aaKnown RBP7.27□□□□□ -1.25
BRCA1-203ENST00000357654 CALRP27797 417 aaKnown RBP7.27□□□□□ -1.25
BRCA1-203ENST00000357654 AKAP17AQ02040 695 aaKnown RBP7.27□□□□□ -1.25
BRCA1-203ENST00000357654 CARD11Q9BXL7 1154 aa7.27□□□□□ -1.25
BRCA1-203ENST00000357654 KDM4AO75164 1064 aa7.27□□□□□ -1.25
BRCA1-203ENST00000357654 GRM1Q13255 1194 aa7.27□□□□□ -1.25
BRCA1-203ENST00000357654 RBM33Q96EV2 1170 aaKnown RBP7.27□□□□□ -1.25
BRCA1-203ENST00000357654 FOXD4L1Q9NU39 408 aa7.26□□□□□ -1.25
BRCA1-203ENST00000357654 TMEM87AQ8NBN3 555 aa7.26□□□□□ -1.25
BRCA1-203ENST00000357654 NGDNQ8NEJ9 315 aaKnown RBP7.26□□□□□ -1.25
BRCA1-203ENST00000357654 GPATCH3Q96I76 525 aa7.26□□□□□ -1.25
BRCA1-203ENST00000357654 MTUS2Q5JR59 1369 aa7.26□□□□□ -1.25
BRCA1-203ENST00000357654 CA8P35219 290 aa7.26□□□□□ -1.25
BRCA1-203ENST00000357654 CDCA8Q53HL2 280 aa7.25□□□□□ -1.25
BRCA1-203ENST00000357654 TPM2P07951 284 aa7.25□□□□□ -1.25
BRCA1-203ENST00000357654 SF3A1Q15459 793 aaKnown RBP7.25□□□□□ -1.25
BRCA1-203ENST00000357654 MORC1Q86VD1 984 aa7.25□□□□□ -1.25
BRCA1-203ENST00000357654 CCDC34Q96HJ3 373 aa7.25□□□□□ -1.25
BRCA1-203ENST00000357654 FAM177BA6PVY3 158 aa7.24□□□□□ -1.25
BRCA1-203ENST00000357654 FOXD1Q16676 465 aa7.24□□□□□ -1.25
BRCA1-203ENST00000357654 SKIDA1Q1XH10 827 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms