RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 ARHGAP5Q13017 1502 aa39.16■■■■□ 3.86
SSBP3-202ENST00000357475 ARAP3Q8WWN8 1544 aa39.12■■■■□ 3.85
SSBP3-202ENST00000357475 FGD6Q6ZV73 1430 aa39.11■■■■□ 3.85
SSBP3-202ENST00000357475 CFDP1Q9UEE9 299 aaPredicted RBP39.1■■■■□ 3.85
SSBP3-202ENST00000357475 FANCAO15360 1455 aa39.08■■■■□ 3.85
SSBP3-202ENST00000357475 SAMD9LQ8IVG5 1584 aa39.07■■■■□ 3.84
SSBP3-202ENST00000357475 ZNF644Q9H582 1327 aaPredicted RBP39.06■■■■□ 3.84
SSBP3-202ENST00000357475 PTPN23Q9H3S7 1636 aa39.06■■■■□ 3.84
SSBP3-202ENST00000357475 ZNF777Q9ULD5 760 aaPredicted RBP39.05■■■■□ 3.84
SSBP3-202ENST00000357475 MIA2Q96PC5 1412 aa39.04■■■■□ 3.84
SSBP3-202ENST00000357475 EFCAB2Q5VUJ9 269 aa39■■■■□ 3.83
SSBP3-202ENST00000357475 CAMSAP2Q08AD1 1489 aa38.99■■■■□ 3.83
SSBP3-202ENST00000357475 RRBP1Q9P2E9 1410 aaKnown RBP38.99■■■■□ 3.83
SSBP3-202ENST00000357475 CFAP74Q9C0B2 1584 aa38.98■■■■□ 3.83
SSBP3-202ENST00000357475 TCOF1Q13428 1488 aaKnown RBP38.95■■■■□ 3.83
SSBP3-202ENST00000357475 TEX14Q8IWB6 1497 aa38.95■■■■□ 3.83
SSBP3-202ENST00000357475 AKNAQ7Z591 1439 aa38.94■■■■□ 3.82
SSBP3-202ENST00000357475 NEO1Q92859 1461 aa38.93■■■■□ 3.82
SSBP3-202ENST00000357475 ABCC1P33527 1531 aa38.93■■■■□ 3.82
SSBP3-202ENST00000357475 ARHGEF12Q9NZN5 1544 aa38.92■■■■□ 3.82
SSBP3-202ENST00000357475 FAM50AQ14320 339 aaKnown RBP38.9■■■■□ 3.82
SSBP3-202ENST00000357475 SYCP2Q9BX26 1530 aa38.9■■■■□ 3.82
SSBP3-202ENST00000357475 ADGRL1O94910 1474 aa38.88■■■■□ 3.81
SSBP3-202ENST00000357475 HNRNPMP52272 730 aaKnown RBP eCLIP38.85■■■■□ 3.811e-6■■■■□ 26.1
SSBP3-202ENST00000357475 SCAPERQ9BY12 1400 aa38.82■■■■□ 3.8
SSBP3-202ENST00000357475 MBD5Q9P267 1494 aa38.82■■■■□ 3.8
SSBP3-202ENST00000357475 PLEKHH2Q8IVE3 1493 aa38.8■■■■□ 3.8
SSBP3-202ENST00000357475 KIAA1107Q9UPP5 1409 aa38.8■■■■□ 3.8
SSBP3-202ENST00000357475 TRAPPC8Q9Y2L5 1435 aa38.78■■■■□ 3.8
SSBP3-202ENST00000357475 COL17A1Q9UMD9 1497 aaPredicted RBP38.77■■■■□ 3.8
SSBP3-202ENST00000357475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.76■■■■□ 3.793e-6■■□□□ 14.4
SSBP3-202ENST00000357475 DNMT1P26358 1616 aaKnown RBP38.75■■■■□ 3.79
SSBP3-202ENST00000357475 ARHGEF5Q12774 1597 aa38.74■■■■□ 3.79
SSBP3-202ENST00000357475 RICTORQ6R327 1708 aa38.73■■■■□ 3.79
SSBP3-202ENST00000357475 FRMPD1Q5SYB0 1578 aa38.71■■■■□ 3.79
SSBP3-202ENST00000357475 ABCC5O15440 1437 aa38.7■■■■□ 3.79
SSBP3-202ENST00000357475 DENND4BO75064 1496 aaPredicted RBP38.7■■■■□ 3.79
SSBP3-202ENST00000357475 CROCC2H7BZ55 1655 aa38.7■■■■□ 3.79
SSBP3-202ENST00000357475 DAPK1P53355 1430 aa38.7■■■■□ 3.79
SSBP3-202ENST00000357475 POGZQ7Z3K3 1410 aa38.7■■■■□ 3.79
SSBP3-202ENST00000357475 RAPGEF3O95398 923 aa38.69■■■■□ 3.78
SSBP3-202ENST00000357475 ITGAEP38570 1179 aa38.69■■■■□ 3.78
SSBP3-202ENST00000357475 AFAP1Q8N556 730 aa38.69■■■■□ 3.78
SSBP3-202ENST00000357475 CCDC141Q6ZP82 1450 aa38.68■■■■□ 3.78
SSBP3-202ENST00000357475 PTPRKQ15262 1439 aa38.67■■■■□ 3.78
SSBP3-202ENST00000357475 KDM6BO15054 1643 aa38.63■■■■□ 3.77
SSBP3-202ENST00000357475 TRIM26Q12899 539 aaPredicted RBP38.63■■■■□ 3.77
SSBP3-202ENST00000357475 ZNF518AQ6AHZ1 1483 aa38.62■■■■□ 3.77
SSBP3-202ENST00000357475 KDM5CP41229 1560 aa38.61■■■■□ 3.77
SSBP3-202ENST00000357475 RSPH4AQ5TD94 716 aa38.55■■■■□ 3.76
SSBP3-202ENST00000357475 CHIC2Q9UKJ5 165 aa38.55■■■■□ 3.76
SSBP3-202ENST00000357475 C9orf84Q5VXU9 1444 aa38.53■■■■□ 3.76
SSBP3-202ENST00000357475 SHANK2Q9UPX8 1470 aa38.53■■■■□ 3.76
SSBP3-202ENST00000357475 INO80Q9ULG1 1556 aaPredicted RBP38.52■■■■□ 3.76
SSBP3-202ENST00000357475 MAST1Q9Y2H9 1570 aa38.52■■■■□ 3.76
SSBP3-202ENST00000357475 ZFYVE16Q7Z3T8 1539 aa38.52■■■■□ 3.76
SSBP3-202ENST00000357475 KIDINS220Q9ULH0 1771 aa38.51■■■■□ 3.75
SSBP3-202ENST00000357475 ZMYM4Q5VZL5 1548 aa38.5■■■■□ 3.75
SSBP3-202ENST00000357475 HECW2Q9P2P5 1572 aa38.5■■■■□ 3.75
SSBP3-202ENST00000357475 SPAG9O60271 1321 aaKnown RBP38.5■■■■□ 3.75
SSBP3-202ENST00000357475 TSPY4P0CV99 314 aa38.49■■■■□ 3.75
SSBP3-202ENST00000357475 TSPY10P0CW01 314 aa38.49■■■■□ 3.75
SSBP3-202ENST00000357475 ADGBQ8N7X0 1667 aa38.49■■■■□ 3.75
SSBP3-202ENST00000357475 ATP7AQ04656 1500 aa38.47■■■■□ 3.75
SSBP3-202ENST00000357475 MLH3Q9UHC1 1453 aa38.45■■■■□ 3.75
SSBP3-202ENST00000357475 ADGRL2O95490 1459 aa38.41■■■■□ 3.74
SSBP3-202ENST00000357475 ABCA6Q8N139 1617 aa38.41■■■■□ 3.74
SSBP3-202ENST00000357475 YEATS2Q9ULM3 1422 aa38.41■■■■□ 3.74
SSBP3-202ENST00000357475 MYT1LQ9UL68 1186 aa38.4■■■■□ 3.74
SSBP3-202ENST00000357475 RTEL1-TNFRSF6BF6WH68 1400 aa38.4■■■■□ 3.74
SSBP3-202ENST00000357475 PLXNC1O60486 1568 aa38.38■■■■□ 3.73
SSBP3-202ENST00000357475 NCOA1Q15788 1441 aa38.38■■■■□ 3.73
SSBP3-202ENST00000357475 PCGF6Q9BYE7 350 aa38.37■■■■□ 3.73
SSBP3-202ENST00000357475 RRP7BPQ9NSQ0 103 aa38.36■■■■□ 3.73
SSBP3-202ENST00000357475 DIP2CQ9Y2E4 1556 aa38.35■■■■□ 3.73
SSBP3-202ENST00000357475 ROCK1Q13464 1354 aa38.34■■■■□ 3.73
SSBP3-202ENST00000357475 ANKRD30AQ9BXX3 1397 aa38.33■■■■□ 3.73
SSBP3-202ENST00000357475 MAGI2Q86UL8 1455 aa38.32■■■■□ 3.73
SSBP3-202ENST00000357475 ARHGEF40Q8TER5 1519 aa38.3■■■■□ 3.72
SSBP3-202ENST00000357475 KIF15Q9NS87 1388 aa38.29■■■■□ 3.72
SSBP3-202ENST00000357475 GCC2Q8IWJ2 1684 aa38.26■■■■□ 3.72
SSBP3-202ENST00000357475 NAIPQ13075 1403 aa38.25■■■■□ 3.71
SSBP3-202ENST00000357475 HFM1A2PYH4 1435 aa38.23■■■■□ 3.71
SSBP3-202ENST00000357475 SIGLEC1Q9BZZ2 1709 aa38.22■■■■□ 3.71
SSBP3-202ENST00000357475 DUOX2Q9NRD8 1548 aa38.19■■■■□ 3.7
SSBP3-202ENST00000357475 A2MP01023 1474 aa38.19■■■■□ 3.7
SSBP3-202ENST00000357475 ATP10AO60312 1499 aa38.18■■■■□ 3.7
SSBP3-202ENST00000357475 DHX29Q7Z478 1369 aaKnown RBP38.14■■■■□ 3.7
SSBP3-202ENST00000357475 ANKRD50Q9ULJ7 1429 aa38.13■■■■□ 3.69
SSBP3-202ENST00000357475 SETD5Q9C0A6 1442 aa38.11■■■■□ 3.69
SSBP3-202ENST00000357475 REREQ9P2R6 1566 aa38.1■■■■□ 3.69
SSBP3-202ENST00000357475 ERBINQ96RT1 1412 aa38.08■■■■□ 3.69
SSBP3-202ENST00000357475 RAB3GAP2Q9H2M9 1393 aa38.05■■■■□ 3.68
SSBP3-202ENST00000357475 EIF2AK4Q9P2K8 1649 aaKnown RBP38.03■■■■□ 3.68
SSBP3-202ENST00000357475 BCORL1Q5H9F3 1711 aa37.99■■■■□ 3.67
SSBP3-202ENST00000357475 KIF3BO15066 747 aa37.97■■■■□ 3.67
SSBP3-202ENST00000357475 AGLP35573 1532 aa37.97■■■■□ 3.67
SSBP3-202ENST00000357475 MROH1Q8NDA8 1641 aa37.94■■■■□ 3.66
SSBP3-202ENST00000357475 DEPDC5O75140 1603 aa37.93■■■■□ 3.66
SSBP3-202ENST00000357475 RNF17Q9BXT8 1623 aaKnown RBP37.92■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms