RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 TROQ12816 1431 aaPredicted RBP23.74■■□□□ 1.39
PRPF40A-201ENST00000354363 YEATS2Q9ULM3 1422 aa23.74■■□□□ 1.39
PRPF40A-201ENST00000354363 MAGI2Q86UL8 1455 aa23.74■■□□□ 1.39
PRPF40A-201ENST00000354363 RIMS1Q86UR5 1692 aaKnown RBP23.73■■□□□ 1.39
PRPF40A-201ENST00000354363 POGZQ7Z3K3 1410 aa23.73■■□□□ 1.39
PRPF40A-201ENST00000354363 EFCAB2Q5VUJ9 269 aa23.7■■□□□ 1.39
PRPF40A-201ENST00000354363 PCF11O94913 1555 aaKnown RBP23.7■■□□□ 1.38
PRPF40A-201ENST00000354363 ILDR1Q86SU0 546 aaPredicted RBP23.7■■□□□ 1.38
PRPF40A-201ENST00000354363 CLIP1P30622 1438 aa23.69■■□□□ 1.38
PRPF40A-201ENST00000354363 CASKIN1Q8WXD9 1431 aa23.67■■□□□ 1.38
PRPF40A-201ENST00000354363 CDC42BPBQ9Y5S2 1711 aa23.67■■□□□ 1.38
PRPF40A-201ENST00000354363 ARHGAP5Q13017 1502 aa23.66■■□□□ 1.38
PRPF40A-201ENST00000354363 CCDC18Q5T9S5 1454 aa23.64■■□□□ 1.38
PRPF40A-201ENST00000354363 FER1L4A9Z1Z3 1794 aa23.63■■□□□ 1.37
PRPF40A-201ENST00000354363 ATP10AO60312 1499 aa23.62■■□□□ 1.37
PRPF40A-201ENST00000354363 ZNF518AQ6AHZ1 1483 aa23.61■■□□□ 1.37
PRPF40A-201ENST00000354363 PREX2Q70Z35 1606 aa23.6■■□□□ 1.37
PRPF40A-201ENST00000354363 KDM5CP41229 1560 aa23.6■■□□□ 1.37
PRPF40A-201ENST00000354363 LMTK3Q96Q04 1460 aa23.59■■□□□ 1.37
PRPF40A-201ENST00000354363 C9orf84Q5VXU9 1444 aa23.59■■□□□ 1.37
PRPF40A-201ENST00000354363 FYCO1Q9BQS8 1478 aa23.58■■□□□ 1.37
PRPF40A-201ENST00000354363 MLECQ14165 292 aa23.58■■□□□ 1.36
PRPF40A-201ENST00000354363 CDC42BPAQ5VT25 1732 aa23.56■■□□□ 1.36
PRPF40A-201ENST00000354363 AFAP1Q8N556 730 aa23.56■■□□□ 1.36
PRPF40A-201ENST00000354363 ARHGEF12Q9NZN5 1544 aa23.54■■□□□ 1.36
PRPF40A-201ENST00000354363 ITSN2Q9NZM3 1697 aa23.53■■□□□ 1.36
PRPF40A-201ENST00000354363 PLPPR3Q6T4P5 718 aa23.53■■□□□ 1.36
PRPF40A-201ENST00000354363 ABCC1P33527 1531 aa23.52■■□□□ 1.36
PRPF40A-201ENST00000354363 DIP2CQ9Y2E4 1556 aa23.51■■□□□ 1.35
PRPF40A-201ENST00000354363 ABCA6Q8N139 1617 aa23.49■■□□□ 1.35
PRPF40A-201ENST00000354363 TRAPPC8Q9Y2L5 1435 aa23.48■■□□□ 1.35
PRPF40A-201ENST00000354363 MLH3Q9UHC1 1453 aa23.48■■□□□ 1.35
PRPF40A-201ENST00000354363 REREQ9P2R6 1566 aa23.48■■□□□ 1.35
PRPF40A-201ENST00000354363 MYT1LQ9UL68 1186 aa23.48■■□□□ 1.35
PRPF40A-201ENST00000354363 HSPA2P54652 639 aa23.44■■□□□ 1.34
PRPF40A-201ENST00000354363 KIDINS220Q9ULH0 1771 aa23.44■■□□□ 1.34
PRPF40A-201ENST00000354363 SAMD9LQ8IVG5 1584 aa23.42■■□□□ 1.34
PRPF40A-201ENST00000354363 PREX1Q8TCU6 1659 aa23.41■■□□□ 1.34
PRPF40A-201ENST00000354363 GPATCH8Q9UKJ3 1502 aaKnown RBP23.41■■□□□ 1.34
PRPF40A-201ENST00000354363 SETD1BQ9UPS6 1966 aaKnown RBP23.4■■□□□ 1.34
PRPF40A-201ENST00000354363 AGLP35573 1532 aa23.39■■□□□ 1.34
PRPF40A-201ENST00000354363 CEBPAP49715 358 aaPredicted RBP23.38■■□□□ 1.33
PRPF40A-201ENST00000354363 ZNF777Q9ULD5 760 aaPredicted RBP23.37■■□□□ 1.33
PRPF40A-201ENST00000354363 SYCP2Q9BX26 1530 aa23.37■■□□□ 1.33
PRPF40A-201ENST00000354363 FBXO41Q8TF61 875 aa23.35■■□□□ 1.33
PRPF40A-201ENST00000354363 C3P01024 1663 aa23.35■■□□□ 1.33
PRPF40A-201ENST00000354363 MTUS2Q5JR59 1369 aa23.33■■□□□ 1.33
PRPF40A-201ENST00000354363 CCNB3Q8WWL7 1395 aa23.32■■□□□ 1.32
PRPF40A-201ENST00000354363 HNRNPMP52272 730 aaKnown RBP eCLIP23.31■■□□□ 1.322e-7■■■■■ 36.2
PRPF40A-201ENST00000354363 CEP162Q5TB80 1403 aa23.3■■□□□ 1.32
PRPF40A-201ENST00000354363 KIAA1107Q9UPP5 1409 aa23.3■■□□□ 1.32
PRPF40A-201ENST00000354363 CFDP1Q9UEE9 299 aaPredicted RBP23.3■■□□□ 1.32
PRPF40A-201ENST00000354363 PLEKHH2Q8IVE3 1493 aa23.29■■□□□ 1.32
PRPF40A-201ENST00000354363 SPAG9O60271 1321 aaKnown RBP23.28■■□□□ 1.32
PRPF40A-201ENST00000354363 SUPT6HQ7KZ85 1726 aaKnown RBP23.28■■□□□ 1.32
PRPF40A-201ENST00000354363 ATP7AQ04656 1500 aa23.27■■□□□ 1.32
PRPF40A-201ENST00000354363 EHBP1L1Q8N3D4 1523 aa23.27■■□□□ 1.32
PRPF40A-201ENST00000354363 TIAM1Q13009 1591 aa23.27■■□□□ 1.32
PRPF40A-201ENST00000354363 INO80Q9ULG1 1556 aaPredicted RBP23.27■■□□□ 1.32
PRPF40A-201ENST00000354363 UHRF1BP1Q6BDS2 1440 aa23.27■■□□□ 1.31
PRPF40A-201ENST00000354363 STRCQ7RTU9 1775 aa23.26■■□□□ 1.31
PRPF40A-201ENST00000354363 ESF1Q9H501 851 aaKnown RBP23.26■■□□□ 1.31
PRPF40A-201ENST00000354363 CNTLNQ9NXG0 1405 aa23.23■■□□□ 1.31
PRPF40A-201ENST00000354363 MROH2AA6NES4 1674 aa23.22■■□□□ 1.31
PRPF40A-201ENST00000354363 PLXNC1O60486 1568 aa23.22■■□□□ 1.31
PRPF40A-201ENST00000354363 A2MP01023 1474 aa23.19■■□□□ 1.3
PRPF40A-201ENST00000354363 ZNF644Q9H582 1327 aaPredicted RBP23.19■■□□□ 1.3
PRPF40A-201ENST00000354363 ADGBQ8N7X0 1667 aa23.19■■□□□ 1.3
PRPF40A-201ENST00000354363 MBD5Q9P267 1494 aa23.17■■□□□ 1.3
PRPF40A-201ENST00000354363 CLTCQ00610 1675 aaKnown RBP23.16■■□□□ 1.3
PRPF40A-201ENST00000354363 CERKQ8TCT0 537 aa23.15■■□□□ 1.3
PRPF40A-201ENST00000354363 DMRT2Q9Y5R5 561 aa23.13■■□□□ 1.29
PRPF40A-201ENST00000354363 ZMYM3Q14202 1370 aa23.13■■□□□ 1.29
PRPF40A-201ENST00000354363 NCOA2Q15596 1464 aa23.13■■□□□ 1.29
PRPF40A-201ENST00000354363 NPATQ14207 1427 aa23.12■■□□□ 1.29
PRPF40A-201ENST00000354363 RTEL1-TNFRSF6BF6WH68 1400 aa23.1■■□□□ 1.29
PRPF40A-201ENST00000354363 LOC105371045A0A1W2PR82 267 aa23.08■■□□□ 1.29
PRPF40A-201ENST00000354363 GGT6Q6P531 493 aa23.08■■□□□ 1.28
PRPF40A-201ENST00000354363 CAMSAP2Q08AD1 1489 aa23.07■■□□□ 1.28
PRPF40A-201ENST00000354363 PTPRTO14522 1441 aa23.07■■□□□ 1.28
PRPF40A-201ENST00000354363 VPS8Q8N3P4 1428 aa23.05■■□□□ 1.28
PRPF40A-201ENST00000354363 CCDC141Q6ZP82 1450 aa23.05■■□□□ 1.28
PRPF40A-201ENST00000354363 NCOA1Q15788 1441 aa23.05■■□□□ 1.28
PRPF40A-201ENST00000354363 CAMSAP1Q5T5Y3 1602 aa23.04■■□□□ 1.28
PRPF40A-201ENST00000354363 MYO3AQ8NEV4 1616 aa23.04■■□□□ 1.28
PRPF40A-201ENST00000354363 PPP6R1Q9UPN7 881 aa23.04■■□□□ 1.28
PRPF40A-201ENST00000354363 ZNF142P52746 1687 aaPredicted RBP23.04■■□□□ 1.28
PRPF40A-201ENST00000354363 DHX29Q7Z478 1369 aaKnown RBP23.03■■□□□ 1.28
PRPF40A-201ENST00000354363 PTPRKQ15262 1439 aa23.03■■□□□ 1.28
PRPF40A-201ENST00000354363 LRRC9Q6ZRR7 1453 aa23.01■■□□□ 1.27
PRPF40A-201ENST00000354363 ARHGEF5Q12774 1597 aa23.01■■□□□ 1.27
PRPF40A-201ENST00000354363 RSPH4AQ5TD94 716 aa23■■□□□ 1.27
PRPF40A-201ENST00000354363 CEP170BQ9Y4F5 1589 aaPredicted RBP22.98■■□□□ 1.27
PRPF40A-201ENST00000354363 MAP3K1Q13233 1512 aa22.95■■□□□ 1.26
PRPF40A-201ENST00000354363 LTBP4Q8N2S1 1624 aa22.95■■□□□ 1.26
PRPF40A-201ENST00000354363 KIF3BO15066 747 aa22.95■■□□□ 1.26
PRPF40A-201ENST00000354363 FAM135AQ9P2D6 1515 aa22.93■■□□□ 1.26
PRPF40A-201ENST00000354363 PLA2R1Q13018 1463 aa22.92■■□□□ 1.26
PRPF40A-201ENST00000354363 NCKAP5LQ9HCH0 1330 aa22.92■■□□□ 1.26
PRPF40A-201ENST00000354363 KANK4Q5T7N3 995 aaPredicted RBP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms