RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 MAP7D2Q96T17 732 aa22.02■■□□□ 1.12
SMAD4-201ENST00000342988 CREBRFQ8IUR6 639 aa22.01■■□□□ 1.11
SMAD4-201ENST00000342988 APPP05067 770 aa22.01■■□□□ 1.11
SMAD4-201ENST00000342988 ZNF771Q7L3S4 317 aaPredicted RBP22.01■■□□□ 1.11
SMAD4-201ENST00000342988 RSPH6AQ9H0K4 717 aa22■■□□□ 1.11
SMAD4-201ENST00000342988 AK7Q96M32 723 aa22■■□□□ 1.11
SMAD4-201ENST00000342988 FBXO3Q9UK99 471 aa22■■□□□ 1.11
SMAD4-201ENST00000342988 STK11IPQ8N1F8 1099 aa21.99■■□□□ 1.11
SMAD4-201ENST00000342988 DCTN1Q14203 1278 aa21.99■■□□□ 1.11
SMAD4-201ENST00000342988 CNKSR2Q8WXI2 1034 aa21.99■■□□□ 1.11
SMAD4-201ENST00000342988 CHMP4CQ96CF2 233 aa21.98■■□□□ 1.11
SMAD4-201ENST00000342988 SUPT16HQ9Y5B9 1047 aaKnown RBP21.98■■□□□ 1.11
SMAD4-201ENST00000342988 IPO7O95373 1038 aaKnown RBP21.96■■□□□ 1.11
SMAD4-201ENST00000342988 PES1O00541 588 aaKnown RBP21.96■■□□□ 1.11
SMAD4-201ENST00000342988 TCEAL9Q9UHQ7 104 aa21.96■■□□□ 1.11
SMAD4-201ENST00000342988 RUFY1Q96T51 708 aa21.96■■□□□ 1.11
SMAD4-201ENST00000342988 MTUS2Q5JR59 1369 aa21.95■■□□□ 1.1
SMAD4-201ENST00000342988 IPO8O15397 1037 aaKnown RBP21.95■■□□□ 1.1
SMAD4-201ENST00000342988 RDXP35241 583 aaKnown RBP21.95■■□□□ 1.1
SMAD4-201ENST00000342988 HDAC5Q9UQL6 1122 aa21.95■■□□□ 1.1
SMAD4-201ENST00000342988 ZRSR2Q15696 482 aaKnown RBP21.94■■□□□ 1.1
SMAD4-201ENST00000342988 GOLGA6L19H0YKK7 550 aa21.94■■□□□ 1.1
SMAD4-201ENST00000342988 VPS53Q5VIR6 699 aa21.94■■□□□ 1.1
SMAD4-201ENST00000342988 SPRYD3Q8NCJ5 442 aa21.93■■□□□ 1.1
SMAD4-201ENST00000342988 CCAR2Q8N163 923 aaKnown RBP21.92■■□□□ 1.1
SMAD4-201ENST00000342988 ACBD3Q9H3P7 528 aa21.92■■□□□ 1.1
SMAD4-201ENST00000342988 MARCH6O60337 910 aa21.92■■□□□ 1.1
SMAD4-201ENST00000342988 LMOD2Q6P5Q4 547 aa21.92■■□□□ 1.1
SMAD4-201ENST00000342988 RTF1Q92541 710 aaKnown RBP21.91■■□□□ 1.1
SMAD4-201ENST00000342988 TAF7LQ5H9L4 462 aa21.91■■□□□ 1.1
SMAD4-201ENST00000342988 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
SMAD4-201ENST00000342988 NEUROD2Q15784 382 aa21.9■■□□□ 1.1
SMAD4-201ENST00000342988 GZF1Q9H116 711 aaPredicted RBP21.9■■□□□ 1.1
SMAD4-201ENST00000342988 ANKRD20A12PQ8NF67 263 aa21.89■■□□□ 1.09
SMAD4-201ENST00000342988 CWC15Q9P013 229 aaKnown RBP21.89■■□□□ 1.09
SMAD4-201ENST00000342988 MYO6Q9UM54 1294 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 G3V3G9 751 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 DCAF8Q5TAQ9 597 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.88■■□□□ 1.09
SMAD4-201ENST00000342988 GORABQ5T7V8 394 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 KIF16BQ96L93 1317 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
SMAD4-201ENST00000342988 CHIC2Q9UKJ5 165 aa21.87■■□□□ 1.09
SMAD4-201ENST00000342988 NEXNQ0ZGT2 675 aa21.87■■□□□ 1.09
SMAD4-201ENST00000342988 POGKQ9P215 609 aa21.86■■□□□ 1.09
SMAD4-201ENST00000342988 TCERG1O14776 1098 aaKnown RBP21.86■■□□□ 1.09
SMAD4-201ENST00000342988 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.86■■□□□ 1.093e-9■■■■■ 48.4
SMAD4-201ENST00000342988 HOOK1Q9UJC3 728 aaKnown RBP21.85■■□□□ 1.09
SMAD4-201ENST00000342988 SF3A1Q15459 793 aaKnown RBP21.85■■□□□ 1.09
SMAD4-201ENST00000342988 ATP6V1DQ9Y5K8 247 aa21.84■■□□□ 1.09
SMAD4-201ENST00000342988 ODF2Q5BJF6 829 aa21.84■■□□□ 1.09
SMAD4-201ENST00000342988 DDX11L8A8MPP1 907 aa21.83■■□□□ 1.09
SMAD4-201ENST00000342988 RSF1Q96T23 1441 aaPredicted RBP21.83■■□□□ 1.08
SMAD4-201ENST00000342988 U2SURPO15042 1029 aaKnown RBP21.82■■□□□ 1.08
SMAD4-201ENST00000342988 ST18O60284 1047 aa21.81■■□□□ 1.08
SMAD4-201ENST00000342988 CSRNP3Q8WYN3 585 aa21.8■■□□□ 1.08
SMAD4-201ENST00000342988 MIER1Q8N108 512 aa21.8■■□□□ 1.08
SMAD4-201ENST00000342988 CCDC173Q0VFZ6 552 aa21.78■■□□□ 1.08
SMAD4-201ENST00000342988 ARGLU1Q9NWB6 273 aaPredicted RBP21.78■■□□□ 1.08
SMAD4-201ENST00000342988 HSP90B2PQ58FF3 399 aa21.77■■□□□ 1.08
SMAD4-201ENST00000342988 H3BQV1 296 aa21.77■■□□□ 1.08
SMAD4-201ENST00000342988 IFFO2Q5TF58 517 aa21.77■■□□□ 1.08
SMAD4-201ENST00000342988 CCDC47Q96A33 483 aaKnown RBP21.76■■□□□ 1.07
SMAD4-201ENST00000342988 BECN2A8MW95 431 aa21.75■■□□□ 1.07
SMAD4-201ENST00000342988 AKAP17AQ02040 695 aaKnown RBP21.75■■□□□ 1.07
SMAD4-201ENST00000342988 H0YHG0 523 aa21.75■■□□□ 1.07
SMAD4-201ENST00000342988 CT47A1Q5JQC4 288 aaPredicted RBP21.74■■□□□ 1.07
SMAD4-201ENST00000342988 CAGE1Q8TC20 777 aa21.74■■□□□ 1.07
SMAD4-201ENST00000342988 HDGFP51858 240 aaKnown RBP21.74■■□□□ 1.07
SMAD4-201ENST00000342988 TRIM6-TRIM34B2RNG4 842 aa21.74■■□□□ 1.07
SMAD4-201ENST00000342988 RWDD1Q9H446 243 aaPredicted RBP21.73■■□□□ 1.07
SMAD4-201ENST00000342988 INCENPQ9NQS7 918 aa21.73■■□□□ 1.07
SMAD4-201ENST00000342988 CARD11Q9BXL7 1154 aa21.72■■□□□ 1.07
SMAD4-201ENST00000342988 PCMTD1Q96MG8 357 aaPredicted RBP21.72■■□□□ 1.07
SMAD4-201ENST00000342988 SKOR2Q2VWA4 1001 aaPredicted RBP21.71■■□□□ 1.07
SMAD4-201ENST00000342988 LRRFIP1Q32MZ4 808 aaKnown RBP21.71■■□□□ 1.07
SMAD4-201ENST00000342988 SPAG9O60271 1321 aaKnown RBP21.71■■□□□ 1.07
SMAD4-201ENST00000342988 ANO8Q9HCE9 1232 aaPredicted RBP21.71■■□□□ 1.07
SMAD4-201ENST00000342988 PMFBP1Q8TBY8 1022 aa21.7■■□□□ 1.07
SMAD4-201ENST00000342988 MTERF4Q7Z6M4 381 aaKnown RBP21.68■■□□□ 1.06
SMAD4-201ENST00000342988 WWC1Q8IX03 1113 aa21.68■■□□□ 1.06
SMAD4-201ENST00000342988 AMOTL1Q8IY63 956 aa21.68■■□□□ 1.06
SMAD4-201ENST00000342988 CHMP3Q9Y3E7 222 aa21.67■■□□□ 1.06
SMAD4-201ENST00000342988 ERCC4Q92889 916 aaPredicted RBP21.66■■□□□ 1.06
SMAD4-201ENST00000342988 HOMER1Q86YM7 354 aa21.66■■□□□ 1.06
SMAD4-201ENST00000342988 ANKRD18AQ8IVF6 992 aa21.66■■□□□ 1.06
SMAD4-201ENST00000342988 GOLGA6L7A0A1B0GV03 622 aa21.65■■□□□ 1.06
SMAD4-201ENST00000342988 SLKQ9H2G2 1235 aaPredicted RBP21.65■■□□□ 1.06
SMAD4-201ENST00000342988 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
SMAD4-201ENST00000342988 CCDC66A2RUB6 948 aa21.65■■□□□ 1.06
SMAD4-201ENST00000342988 DYDC1Q8WWB3 177 aa21.65■■□□□ 1.06
SMAD4-201ENST00000342988 B4GALNT3Q6L9W6 998 aa21.64■■□□□ 1.06
SMAD4-201ENST00000342988 CTDP1Q9Y5B0 961 aaPredicted RBP21.64■■□□□ 1.06
SMAD4-201ENST00000342988 CCDC43Q96MW1 224 aaKnown RBP21.64■■□□□ 1.05
SMAD4-201ENST00000342988 FAM184AQ8NB25 1140 aa21.64■■□□□ 1.05
SMAD4-201ENST00000342988 TRIM34Q9BYJ4 488 aa21.64■■□□□ 1.05
SMAD4-201ENST00000342988 VSIG10Q8N0Z9 540 aa21.64■■□□□ 1.05
SMAD4-201ENST00000342988 KANK1Q14678 1352 aa21.63■■□□□ 1.05
SMAD4-201ENST00000342988 EPS15P42566 896 aa21.62■■□□□ 1.05
SMAD4-201ENST00000342988 HSP90AB2PQ58FF8 381 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms