RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 MIA2Q96PC5 1412 aa32.98■■■□□ 2.87
TPM1-204ENST00000334895 TRIM26Q12899 539 aaPredicted RBP32.95■■■□□ 2.87
TPM1-204ENST00000334895 PLCH2O75038 1416 aa32.95■■■□□ 2.87
TPM1-204ENST00000334895 PTPN23Q9H3S7 1636 aa32.95■■■□□ 2.86
TPM1-204ENST00000334895 CFDP1Q9UEE9 299 aaPredicted RBP32.92■■■□□ 2.86
TPM1-204ENST00000334895 TCOF1Q13428 1488 aaKnown RBP32.91■■■□□ 2.86
TPM1-204ENST00000334895 ARAP3Q8WWN8 1544 aa32.91■■■□□ 2.86
TPM1-204ENST00000334895 ARHGAP5Q13017 1502 aa32.9■■■□□ 2.86
TPM1-204ENST00000334895 CD109Q6YHK3 1445 aa32.89■■■□□ 2.86
TPM1-204ENST00000334895 ZNF644Q9H582 1327 aaPredicted RBP32.87■■■□□ 2.85
TPM1-204ENST00000334895 SAMD9LQ8IVG5 1584 aa32.85■■■□□ 2.85
TPM1-204ENST00000334895 CAMSAP2Q08AD1 1489 aa32.85■■■□□ 2.85
TPM1-204ENST00000334895 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.84■■■□□ 2.85
TPM1-204ENST00000334895 FAM50AQ14320 339 aaKnown RBP32.83■■■□□ 2.85
TPM1-204ENST00000334895 ZNF777Q9ULD5 760 aaPredicted RBP32.81■■■□□ 2.84
TPM1-204ENST00000334895 TEX14Q8IWB6 1497 aa32.8■■■□□ 2.84
TPM1-204ENST00000334895 FANCAO15360 1455 aa32.79■■■□□ 2.84
TPM1-204ENST00000334895 EFCAB2Q5VUJ9 269 aa32.78■■■□□ 2.84
TPM1-204ENST00000334895 PCGF6Q9BYE7 350 aa32.73■■■□□ 2.83
TPM1-204ENST00000334895 KDM6BO15054 1643 aa32.73■■■□□ 2.83
TPM1-204ENST00000334895 ABCC1P33527 1531 aa32.72■■■□□ 2.83
TPM1-204ENST00000334895 CFAP74Q9C0B2 1584 aa32.7■■■□□ 2.83
TPM1-204ENST00000334895 SYCP2Q9BX26 1530 aa32.7■■■□□ 2.83
TPM1-204ENST00000334895 ARHGEF12Q9NZN5 1544 aa32.7■■■□□ 2.83
TPM1-204ENST00000334895 MBD5Q9P267 1494 aa32.7■■■□□ 2.82
TPM1-204ENST00000334895 DNMT1P26358 1616 aaKnown RBP32.7■■■□□ 2.82
TPM1-204ENST00000334895 PLEKHH2Q8IVE3 1493 aa32.68■■■□□ 2.82
TPM1-204ENST00000334895 KIAA1107Q9UPP5 1409 aa32.68■■■□□ 2.82
TPM1-204ENST00000334895 AKNAQ7Z591 1439 aa32.67■■■□□ 2.82
TPM1-204ENST00000334895 NEO1Q92859 1461 aa32.67■■■□□ 2.82
TPM1-204ENST00000334895 PTPRKQ15262 1439 aa32.66■■■□□ 2.82
TPM1-204ENST00000334895 ARHGEF5Q12774 1597 aa32.65■■■□□ 2.82
TPM1-204ENST00000334895 ABCC5O15440 1437 aa32.65■■■□□ 2.82
TPM1-204ENST00000334895 ITGAEP38570 1179 aa32.65■■■□□ 2.82
TPM1-204ENST00000334895 HNRNPMP52272 730 aaKnown RBP eCLIP32.65■■■□□ 2.82
TPM1-204ENST00000334895 DAPK1P53355 1430 aa32.64■■■□□ 2.82
TPM1-204ENST00000334895 ADGRL1O94910 1474 aa32.64■■■□□ 2.82
TPM1-204ENST00000334895 CROCC2H7BZ55 1655 aa32.61■■■□□ 2.81
TPM1-204ENST00000334895 COL17A1Q9UMD9 1497 aaPredicted RBP32.6■■■□□ 2.81
TPM1-204ENST00000334895 SCAPERQ9BY12 1400 aa32.58■■■□□ 2.81
TPM1-204ENST00000334895 CCDC141Q6ZP82 1450 aa32.58■■■□□ 2.81
TPM1-204ENST00000334895 TRAPPC8Q9Y2L5 1435 aa32.57■■■□□ 2.81
TPM1-204ENST00000334895 SHANK2Q9UPX8 1470 aa32.52■■■□□ 2.8
TPM1-204ENST00000334895 RSPH4AQ5TD94 716 aa32.51■■■□□ 2.8
TPM1-204ENST00000334895 POGZQ7Z3K3 1410 aa32.48■■■□□ 2.79
TPM1-204ENST00000334895 CHIC2Q9UKJ5 165 aa32.48■■■□□ 2.79
TPM1-204ENST00000334895 C9orf84Q5VXU9 1444 aa32.47■■■□□ 2.79
TPM1-204ENST00000334895 AFAP1Q8N556 730 aa32.47■■■□□ 2.79
TPM1-204ENST00000334895 MAST1Q9Y2H9 1570 aa32.46■■■□□ 2.79
TPM1-204ENST00000334895 RICTORQ6R327 1708 aa32.46■■■□□ 2.79
TPM1-204ENST00000334895 DENND4BO75064 1496 aaPredicted RBP32.45■■■□□ 2.79
TPM1-204ENST00000334895 ADGBQ8N7X0 1667 aa32.45■■■□□ 2.78
TPM1-204ENST00000334895 ZNF518AQ6AHZ1 1483 aa32.44■■■□□ 2.78
TPM1-204ENST00000334895 FRMPD1Q5SYB0 1578 aa32.44■■■□□ 2.78
TPM1-204ENST00000334895 ADGRL2O95490 1459 aa32.43■■■□□ 2.78
TPM1-204ENST00000334895 KDM5CP41229 1560 aa32.43■■■□□ 2.78
TPM1-204ENST00000334895 TSPY4P0CV99 314 aa32.42■■■□□ 2.78
TPM1-204ENST00000334895 TSPY10P0CW01 314 aa32.42■■■□□ 2.78
TPM1-204ENST00000334895 ROCK1Q13464 1354 aa32.41■■■□□ 2.78
TPM1-204ENST00000334895 RAPGEF3O95398 923 aa32.4■■■□□ 2.78
TPM1-204ENST00000334895 INO80Q9ULG1 1556 aaPredicted RBP32.39■■■□□ 2.78
TPM1-204ENST00000334895 ZFYVE16Q7Z3T8 1539 aa32.39■■■□□ 2.78
TPM1-204ENST00000334895 NCOA1Q15788 1441 aa32.38■■■□□ 2.77
TPM1-204ENST00000334895 HFM1A2PYH4 1435 aa32.36■■■□□ 2.77
TPM1-204ENST00000334895 SPAG9O60271 1321 aaKnown RBP32.35■■■□□ 2.77
TPM1-204ENST00000334895 RRP7BPQ9NSQ0 103 aa32.35■■■□□ 2.77
TPM1-204ENST00000334895 RTEL1-TNFRSF6BF6WH68 1400 aa32.34■■■□□ 2.77
TPM1-204ENST00000334895 NAIPQ13075 1403 aa32.34■■■□□ 2.77
TPM1-204ENST00000334895 GCC2Q8IWJ2 1684 aa32.33■■■□□ 2.77
TPM1-204ENST00000334895 ATP7AQ04656 1500 aa32.33■■■□□ 2.77
TPM1-204ENST00000334895 ANKRD30AQ9BXX3 1397 aa32.33■■■□□ 2.77
TPM1-204ENST00000334895 PLXNC1O60486 1568 aa32.33■■■□□ 2.77
TPM1-204ENST00000334895 KIDINS220Q9ULH0 1771 aa32.33■■■□□ 2.77
TPM1-204ENST00000334895 HECW2Q9P2P5 1572 aa32.31■■■□□ 2.76
TPM1-204ENST00000334895 MLH3Q9UHC1 1453 aa32.3■■■□□ 2.76
TPM1-204ENST00000334895 ZMYM4Q5VZL5 1548 aa32.29■■■□□ 2.76
TPM1-204ENST00000334895 SETD5Q9C0A6 1442 aa32.28■■■□□ 2.76
TPM1-204ENST00000334895 KIF15Q9NS87 1388 aa32.26■■■□□ 2.75
TPM1-204ENST00000334895 RAB3GAP2Q9H2M9 1393 aa32.23■■■□□ 2.75
TPM1-204ENST00000334895 ABCA6Q8N139 1617 aa32.22■■■□□ 2.75
TPM1-204ENST00000334895 YEATS2Q9ULM3 1422 aa32.18■■■□□ 2.74
TPM1-204ENST00000334895 MYT1LQ9UL68 1186 aa32.18■■■□□ 2.74
TPM1-204ENST00000334895 DUOX2Q9NRD8 1548 aa32.18■■■□□ 2.74
TPM1-204ENST00000334895 DIP2CQ9Y2E4 1556 aa32.17■■■□□ 2.74
TPM1-204ENST00000334895 MAGI2Q86UL8 1455 aa32.17■■■□□ 2.74
TPM1-204ENST00000334895 ARHGEF40Q8TER5 1519 aa32.16■■■□□ 2.74
TPM1-204ENST00000334895 ANKRD50Q9ULJ7 1429 aa32.16■■■□□ 2.74
TPM1-204ENST00000334895 ERBINQ96RT1 1412 aa32.1■■■□□ 2.73
TPM1-204ENST00000334895 HRCP23327 699 aa32.08■■■□□ 2.73
TPM1-204ENST00000334895 A2MP01023 1474 aa32.08■■■□□ 2.73
TPM1-204ENST00000334895 DHX29Q7Z478 1369 aaKnown RBP32.08■■■□□ 2.73
TPM1-204ENST00000334895 SIGLEC1Q9BZZ2 1709 aa32.04■■■□□ 2.72
TPM1-204ENST00000334895 ATP10AO60312 1499 aa32.02■■■□□ 2.72
TPM1-204ENST00000334895 EIF2AK4Q9P2K8 1649 aaKnown RBP32.01■■■□□ 2.72
TPM1-204ENST00000334895 REREQ9P2R6 1566 aa31.99■■■□□ 2.71
TPM1-204ENST00000334895 UNC13BO14795 1591 aa31.97■■■□□ 2.71
TPM1-204ENST00000334895 BCORL1Q5H9F3 1711 aa31.96■■■□□ 2.71
TPM1-204ENST00000334895 DEPDC5O75140 1603 aa31.94■■■□□ 2.7
TPM1-204ENST00000334895 MROH1Q8NDA8 1641 aa31.91■■■□□ 2.7
TPM1-204ENST00000334895 KIF3BO15066 747 aa31.9■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms