RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DNMT1P26358 1616 aaKnown RBP22.48■■□□□ 1.19
CCDC88C-202ENST00000334448 MYO5CQ9NQX4 1742 aa22.48■■□□□ 1.19
CCDC88C-202ENST00000334448 PTPRKQ15262 1439 aa22.48■■□□□ 1.19
CCDC88C-202ENST00000334448 CDC42BPBQ9Y5S2 1711 aa22.46■■□□□ 1.19
CCDC88C-202ENST00000334448 PLEKHH2Q8IVE3 1493 aa22.45■■□□□ 1.18
CCDC88C-202ENST00000334448 ABCC5O15440 1437 aa22.44■■□□□ 1.18
CCDC88C-202ENST00000334448 DAPK1P53355 1430 aa22.44■■□□□ 1.18
CCDC88C-202ENST00000334448 ARHGEF5Q12774 1597 aa22.44■■□□□ 1.18
CCDC88C-202ENST00000334448 KIAA1107Q9UPP5 1409 aa22.43■■□□□ 1.18
CCDC88C-202ENST00000334448 SAMD9LQ8IVG5 1584 aa22.42■■□□□ 1.18
CCDC88C-202ENST00000334448 SHANK2Q9UPX8 1470 aa22.42■■□□□ 1.18
CCDC88C-202ENST00000334448 HFM1A2PYH4 1435 aa22.42■■□□□ 1.18
CCDC88C-202ENST00000334448 ZNF644Q9H582 1327 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-202ENST00000334448 KCNH8Q96L42 1107 aa22.42■■□□□ 1.18
CCDC88C-202ENST00000334448 ARHGAP5Q13017 1502 aa22.41■■□□□ 1.18
CCDC88C-202ENST00000334448 ROCK1Q13464 1354 aa22.41■■□□□ 1.18
CCDC88C-202ENST00000334448 MBD5Q9P267 1494 aa22.41■■□□□ 1.18
CCDC88C-202ENST00000334448 GLI2P10070 1586 aa22.39■■□□□ 1.18
CCDC88C-202ENST00000334448 HRCP23327 699 aa22.39■■□□□ 1.17
CCDC88C-202ENST00000334448 SETD5Q9C0A6 1442 aa22.39■■□□□ 1.17
CCDC88C-202ENST00000334448 ADGRL2O95490 1459 aa22.38■■□□□ 1.17
CCDC88C-202ENST00000334448 ITGAEP38570 1179 aa22.37■■□□□ 1.17
CCDC88C-202ENST00000334448 CROCC2H7BZ55 1655 aa22.36■■□□□ 1.17
CCDC88C-202ENST00000334448 RSPH4AQ5TD94 716 aa22.36■■□□□ 1.17
CCDC88C-202ENST00000334448 EFCAB2Q5VUJ9 269 aa22.36■■□□□ 1.17
CCDC88C-202ENST00000334448 NAIPQ13075 1403 aa22.35■■□□□ 1.17
CCDC88C-202ENST00000334448 ABCC1P33527 1531 aa22.35■■□□□ 1.17
CCDC88C-202ENST00000334448 CCDC141Q6ZP82 1450 aa22.34■■□□□ 1.17
CCDC88C-202ENST00000334448 RAB3GAP2Q9H2M9 1393 aa22.32■■□□□ 1.16
CCDC88C-202ENST00000334448 SYCP2Q9BX26 1530 aa22.31■■□□□ 1.16
CCDC88C-202ENST00000334448 GCC2Q8IWJ2 1684 aa22.31■■□□□ 1.16
CCDC88C-202ENST00000334448 MAST1Q9Y2H9 1570 aa22.31■■□□□ 1.16
CCDC88C-202ENST00000334448 ZNF777Q9ULD5 760 aaPredicted RBP22.31■■□□□ 1.16
CCDC88C-202ENST00000334448 FANCAO15360 1455 aa22.3■■□□□ 1.16
CCDC88C-202ENST00000334448 CD109Q6YHK3 1445 aa22.3■■□□□ 1.16
CCDC88C-202ENST00000334448 CFAP74Q9C0B2 1584 aa22.29■■□□□ 1.16
CCDC88C-202ENST00000334448 DIP2BQ9P265 1576 aa22.29■■□□□ 1.16
CCDC88C-202ENST00000334448 ARHGEF12Q9NZN5 1544 aa22.28■■□□□ 1.16
CCDC88C-202ENST00000334448 ADGBQ8N7X0 1667 aa22.28■■□□□ 1.16
CCDC88C-202ENST00000334448 C9orf84Q5VXU9 1444 aa22.28■■□□□ 1.16
CCDC88C-202ENST00000334448 MAP3K4Q9Y6R4 1608 aa22.28■■□□□ 1.16
CCDC88C-202ENST00000334448 NCOA1Q15788 1441 aa22.27■■□□□ 1.16
CCDC88C-202ENST00000334448 ACIN1Q9UKV3 1341 aaKnown RBP22.26■■□□□ 1.15
CCDC88C-202ENST00000334448 NEO1Q92859 1461 aa22.25■■□□□ 1.15
CCDC88C-202ENST00000334448 ANKRD30AQ9BXX3 1397 aa22.24■■□□□ 1.15
CCDC88C-202ENST00000334448 HNRNPMP52272 730 aaKnown RBP eCLIP22.22■■□□□ 1.15
CCDC88C-202ENST00000334448 DHX57Q6P158 1386 aaKnown RBP22.21■■□□□ 1.15
CCDC88C-202ENST00000334448 TSPY4P0CV99 314 aa22.2■■□□□ 1.14
CCDC88C-202ENST00000334448 TSPY10P0CW01 314 aa22.2■■□□□ 1.14
CCDC88C-202ENST00000334448 CLSPNQ9HAW4 1339 aa22.2■■□□□ 1.14
CCDC88C-202ENST00000334448 ADGRL1O94910 1474 aa22.2■■□□□ 1.14
CCDC88C-202ENST00000334448 PLXNC1O60486 1568 aa22.2■■□□□ 1.14
CCDC88C-202ENST00000334448 DNAJC5Q9H3Z4 198 aa22.19■■□□□ 1.14
CCDC88C-202ENST00000334448 CHIC2Q9UKJ5 165 aa22.19■■□□□ 1.14
CCDC88C-202ENST00000334448 RTEL1-TNFRSF6BF6WH68 1400 aa22.19■■□□□ 1.14
CCDC88C-202ENST00000334448 TRAPPC8Q9Y2L5 1435 aa22.19■■□□□ 1.14
CCDC88C-202ENST00000334448 CCER1Q8TC90 406 aaPredicted RBP22.17■■□□□ 1.14
CCDC88C-202ENST00000334448 ZEB1P37275 1124 aaPredicted RBP22.16■■□□□ 1.14
CCDC88C-202ENST00000334448 RRP7BPQ9NSQ0 103 aa22.16■■□□□ 1.14
CCDC88C-202ENST00000334448 SCAPERQ9BY12 1400 aa22.15■■□□□ 1.14
CCDC88C-202ENST00000334448 KIF15Q9NS87 1388 aa22.13■■□□□ 1.13
CCDC88C-202ENST00000334448 ZFYVE16Q7Z3T8 1539 aa22.13■■□□□ 1.13
CCDC88C-202ENST00000334448 ZNF518AQ6AHZ1 1483 aa22.13■■□□□ 1.13
CCDC88C-202ENST00000334448 POGZQ7Z3K3 1410 aa22.13■■□□□ 1.13
CCDC88C-202ENST00000334448 INO80Q9ULG1 1556 aaPredicted RBP22.12■■□□□ 1.13
CCDC88C-202ENST00000334448 KDM5CP41229 1560 aa22.12■■□□□ 1.13
CCDC88C-202ENST00000334448 KDM6BO15054 1643 aa22.11■■□□□ 1.13
CCDC88C-202ENST00000334448 FAM69CQ0P6D2 419 aa22.11■■□□□ 1.13
CCDC88C-202ENST00000334448 ANKRD50Q9ULJ7 1429 aa22.11■■□□□ 1.13
CCDC88C-202ENST00000334448 TEX14Q8IWB6 1497 aa22.1■■□□□ 1.13
CCDC88C-202ENST00000334448 PPRC1Q5VV67 1664 aaKnown RBP22.08■■□□□ 1.13
CCDC88C-202ENST00000334448 DUOX2Q9NRD8 1548 aa22.07■■□□□ 1.12
CCDC88C-202ENST00000334448 KIF13AQ9H1H9 1805 aa22.07■■□□□ 1.12
CCDC88C-202ENST00000334448 SPAG9O60271 1321 aaKnown RBP22.06■■□□□ 1.12
CCDC88C-202ENST00000334448 ATP7AQ04656 1500 aa22.06■■□□□ 1.12
CCDC88C-202ENST00000334448 MLH3Q9UHC1 1453 aa22.06■■□□□ 1.12
CCDC88C-202ENST00000334448 ERBINQ96RT1 1412 aa22.06■■□□□ 1.12
CCDC88C-202ENST00000334448 DENND4BO75064 1496 aaPredicted RBP22.05■■□□□ 1.12
CCDC88C-202ENST00000334448 AFAP1Q8N556 730 aa22.04■■□□□ 1.12
CCDC88C-202ENST00000334448 KDM5DQ9BY66 1539 aa22.04■■□□□ 1.12
CCDC88C-202ENST00000334448 HECW2Q9P2P5 1572 aa21.99■■□□□ 1.11
CCDC88C-202ENST00000334448 ZMYM4Q5VZL5 1548 aa21.99■■□□□ 1.11
CCDC88C-202ENST00000334448 MAGI2Q86UL8 1455 aa21.98■■□□□ 1.11
CCDC88C-202ENST00000334448 RICTORQ6R327 1708 aa21.98■■□□□ 1.11
CCDC88C-202ENST00000334448 KIDINS220Q9ULH0 1771 aa21.97■■□□□ 1.11
CCDC88C-202ENST00000334448 UNC13BO14795 1591 aa21.97■■□□□ 1.11
CCDC88C-202ENST00000334448 PZPP20742 1482 aa21.96■■□□□ 1.11
CCDC88C-202ENST00000334448 FRMPD1Q5SYB0 1578 aa21.96■■□□□ 1.11
CCDC88C-202ENST00000334448 EIF2AK4Q9P2K8 1649 aaKnown RBP21.94■■□□□ 1.1
CCDC88C-202ENST00000334448 DHX29Q7Z478 1369 aaKnown RBP21.93■■□□□ 1.1
CCDC88C-202ENST00000334448 MPHOSPH9Q99550 1183 aa21.9■■□□□ 1.1
CCDC88C-202ENST00000334448 DEPDC5O75140 1603 aa21.89■■□□□ 1.09
CCDC88C-202ENST00000334448 TRIM52Q96A61 297 aa21.89■■□□□ 1.09
CCDC88C-202ENST00000334448 BCORL1Q5H9F3 1711 aa21.88■■□□□ 1.09
CCDC88C-202ENST00000334448 A2MP01023 1474 aa21.88■■□□□ 1.09
CCDC88C-202ENST00000334448 ABCA6Q8N139 1617 aa21.88■■□□□ 1.09
CCDC88C-202ENST00000334448 DIP2CQ9Y2E4 1556 aa21.87■■□□□ 1.09
CCDC88C-202ENST00000334448 NUP155O75694 1391 aa21.87■■□□□ 1.09
CCDC88C-202ENST00000334448 TSPOAP1O95153 1857 aa21.86■■□□□ 1.09
CCDC88C-202ENST00000334448 RAPGEF3O95398 923 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms