RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 AKNAQ7Z591 1439 aa24.96■■□□□ 1.59
CCDC28A-201ENST00000332797 CDC42BPBQ9Y5S2 1711 aa24.96■■□□□ 1.59
CCDC28A-201ENST00000332797 KANK4Q5T7N3 995 aaPredicted RBP24.95■■□□□ 1.58
CCDC28A-201ENST00000332797 EFCAB2Q5VUJ9 269 aa24.94■■□□□ 1.58
CCDC28A-201ENST00000332797 CCNB3Q8WWL7 1395 aa24.94■■□□□ 1.58
CCDC28A-201ENST00000332797 NCOA2Q15596 1464 aa24.92■■□□□ 1.58
CCDC28A-201ENST00000332797 GPATCH8Q9UKJ3 1502 aaKnown RBP24.92■■□□□ 1.58
CCDC28A-201ENST00000332797 ADGRL1O94910 1474 aa24.9■■□□□ 1.58
CCDC28A-201ENST00000332797 ITSN2Q9NZM3 1697 aa24.87■■□□□ 1.57
CCDC28A-201ENST00000332797 DENND4BO75064 1496 aaPredicted RBP24.87■■□□□ 1.57
CCDC28A-201ENST00000332797 RAPGEF3O95398 923 aa24.86■■□□□ 1.57
CCDC28A-201ENST00000332797 FRMPD1Q5SYB0 1578 aa24.86■■□□□ 1.57
CCDC28A-201ENST00000332797 SCAPERQ9BY12 1400 aa24.85■■□□□ 1.57
CCDC28A-201ENST00000332797 CFDP1Q9UEE9 299 aaPredicted RBP24.83■■□□□ 1.57
CCDC28A-201ENST00000332797 ZNF777Q9ULD5 760 aaPredicted RBP24.83■■□□□ 1.57
CCDC28A-201ENST00000332797 RICTORQ6R327 1708 aa24.83■■□□□ 1.57
CCDC28A-201ENST00000332797 SAMD9LQ8IVG5 1584 aa24.81■■□□□ 1.56
CCDC28A-201ENST00000332797 ABCC1P33527 1531 aa24.81■■□□□ 1.56
CCDC28A-201ENST00000332797 POGZQ7Z3K3 1410 aa24.8■■□□□ 1.56
CCDC28A-201ENST00000332797 ARHGEF12Q9NZN5 1544 aa24.76■■□□□ 1.55
CCDC28A-201ENST00000332797 SYCP2Q9BX26 1530 aa24.75■■□□□ 1.55
CCDC28A-201ENST00000332797 ZNF518AQ6AHZ1 1483 aa24.74■■□□□ 1.55
CCDC28A-201ENST00000332797 ZMYM4Q5VZL5 1548 aa24.74■■□□□ 1.55
CCDC28A-201ENST00000332797 MYOM3Q5VTT5 1437 aa24.73■■□□□ 1.55
CCDC28A-201ENST00000332797 PLEKHH2Q8IVE3 1493 aa24.73■■□□□ 1.55
CCDC28A-201ENST00000332797 ZNF644Q9H582 1327 aaPredicted RBP24.72■■□□□ 1.55
CCDC28A-201ENST00000332797 TRAPPC8Q9Y2L5 1435 aa24.71■■□□□ 1.55
CCDC28A-201ENST00000332797 CAMSAP2Q08AD1 1489 aa24.7■■□□□ 1.54
CCDC28A-201ENST00000332797 AFAP1Q8N556 730 aa24.7■■□□□ 1.54
CCDC28A-201ENST00000332797 KIAA1107Q9UPP5 1409 aa24.7■■□□□ 1.54
CCDC28A-201ENST00000332797 KDM5CP41229 1560 aa24.69■■□□□ 1.54
CCDC28A-201ENST00000332797 HNRNPMP52272 730 aaKnown RBP eCLIP24.69■■□□□ 1.54
CCDC28A-201ENST00000332797 ARHGEF40Q8TER5 1519 aa24.68■■□□□ 1.54
CCDC28A-201ENST00000332797 ZFYVE16Q7Z3T8 1539 aa24.67■■□□□ 1.54
CCDC28A-201ENST00000332797 PPARGC1BQ86YN6 1023 aaKnown RBP24.67■■□□□ 1.54
CCDC28A-201ENST00000332797 MAGI2Q86UL8 1455 aa24.67■■□□□ 1.54
CCDC28A-201ENST00000332797 MIA2Q96PC5 1412 aa24.66■■□□□ 1.54
CCDC28A-201ENST00000332797 HECW2Q9P2P5 1572 aa24.65■■□□□ 1.54
CCDC28A-201ENST00000332797 YEATS2Q9ULM3 1422 aa24.64■■□□□ 1.54
CCDC28A-201ENST00000332797 MYT1LQ9UL68 1186 aa24.63■■□□□ 1.53
CCDC28A-201ENST00000332797 MBD5Q9P267 1494 aa24.62■■□□□ 1.53
CCDC28A-201ENST00000332797 FGD6Q6ZV73 1430 aa24.61■■□□□ 1.53
CCDC28A-201ENST00000332797 PTPN23Q9H3S7 1636 aa24.6■■□□□ 1.53
CCDC28A-201ENST00000332797 MLH3Q9UHC1 1453 aa24.6■■□□□ 1.53
CCDC28A-201ENST00000332797 CCDC141Q6ZP82 1450 aa24.58■■□□□ 1.52
CCDC28A-201ENST00000332797 SPAG9O60271 1321 aaKnown RBP24.57■■□□□ 1.52
CCDC28A-201ENST00000332797 KIDINS220Q9ULH0 1771 aa24.56■■□□□ 1.52
CCDC28A-201ENST00000332797 ARHGEF5Q12774 1597 aa24.56■■□□□ 1.52
CCDC28A-201ENST00000332797 ABCA6Q8N139 1617 aa24.56■■□□□ 1.52
CCDC28A-201ENST00000332797 DIP2CQ9Y2E4 1556 aa24.55■■□□□ 1.52
CCDC28A-201ENST00000332797 INO80Q9ULG1 1556 aaPredicted RBP24.55■■□□□ 1.52
CCDC28A-201ENST00000332797 ATP7AQ04656 1500 aa24.54■■□□□ 1.52
CCDC28A-201ENST00000332797 ATP10AO60312 1499 aa24.53■■□□□ 1.52
CCDC28A-201ENST00000332797 TCOF1Q13428 1488 aaKnown RBP24.53■■□□□ 1.52
CCDC28A-201ENST00000332797 C9orf84Q5VXU9 1444 aa24.52■■□□□ 1.52
CCDC28A-201ENST00000332797 RSPH4AQ5TD94 716 aa24.51■■□□□ 1.51
CCDC28A-201ENST00000332797 ARID4BQ4LE39 1312 aaPredicted RBP24.5■■□□□ 1.51
CCDC28A-201ENST00000332797 SIGLEC1Q9BZZ2 1709 aa24.5■■□□□ 1.51
CCDC28A-201ENST00000332797 FAM50AQ14320 339 aaKnown RBP24.46■■□□□ 1.51
CCDC28A-201ENST00000332797 RTEL1-TNFRSF6BF6WH68 1400 aa24.46■■□□□ 1.51
CCDC28A-201ENST00000332797 TSPY4P0CV99 314 aa24.45■■□□□ 1.51
CCDC28A-201ENST00000332797 TSPY10P0CW01 314 aa24.45■■□□□ 1.51
CCDC28A-201ENST00000332797 REREQ9P2R6 1566 aa24.45■■□□□ 1.5
CCDC28A-201ENST00000332797 DNMT1P26358 1616 aaKnown RBP24.44■■□□□ 1.5
CCDC28A-201ENST00000332797 CROCC2H7BZ55 1655 aa24.44■■□□□ 1.5
CCDC28A-201ENST00000332797 MAST1Q9Y2H9 1570 aa24.43■■□□□ 1.5
CCDC28A-201ENST00000332797 KDM4FA0A1W2PPD8 638 aa24.43■■□□□ 1.5
CCDC28A-201ENST00000332797 ABCC5O15440 1437 aa24.42■■□□□ 1.5
CCDC28A-201ENST00000332797 DAPK1P53355 1430 aa24.42■■□□□ 1.5
CCDC28A-201ENST00000332797 BCORL1Q5H9F3 1711 aa24.42■■□□□ 1.5
CCDC28A-201ENST00000332797 ADGBQ8N7X0 1667 aa24.41■■□□□ 1.5
CCDC28A-201ENST00000332797 SHANK2Q9UPX8 1470 aa24.4■■□□□ 1.5
CCDC28A-201ENST00000332797 A2MP01023 1474 aa24.39■■□□□ 1.49
CCDC28A-201ENST00000332797 PLXNC1O60486 1568 aa24.37■■□□□ 1.49
CCDC28A-201ENST00000332797 MLECQ14165 292 aa24.37■■□□□ 1.49
CCDC28A-201ENST00000332797 AGLP35573 1532 aa24.36■■□□□ 1.49
CCDC28A-201ENST00000332797 ADAMTSL3P82987 1691 aa24.36■■□□□ 1.49
CCDC28A-201ENST00000332797 RRBP1Q9P2E9 1410 aaKnown RBP24.33■■□□□ 1.49
CCDC28A-201ENST00000332797 MADDQ8WXG6 1647 aa24.33■■□□□ 1.49
CCDC28A-201ENST00000332797 CHIC2Q9UKJ5 165 aa24.32■■□□□ 1.48
CCDC28A-201ENST00000332797 DHX29Q7Z478 1369 aaKnown RBP24.31■■□□□ 1.48
CCDC28A-201ENST00000332797 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.3■■□□□ 1.48
CCDC28A-201ENST00000332797 AEBP2Q6ZN18 517 aaPredicted RBP24.29■■□□□ 1.48
CCDC28A-201ENST00000332797 FER1L4A9Z1Z3 1794 aa24.28■■□□□ 1.48
CCDC28A-201ENST00000332797 KIF15Q9NS87 1388 aa24.27■■□□□ 1.48
CCDC28A-201ENST00000332797 RIMS1Q86UR5 1692 aaKnown RBP24.27■■□□□ 1.48
CCDC28A-201ENST00000332797 ITGAEP38570 1179 aa24.26■■□□□ 1.47
CCDC28A-201ENST00000332797 ANKRD30AQ9BXX3 1397 aa24.26■■□□□ 1.47
CCDC28A-201ENST00000332797 RRP7BPQ9NSQ0 103 aa24.26■■□□□ 1.47
CCDC28A-201ENST00000332797 PTPRKQ15262 1439 aa24.25■■□□□ 1.47
CCDC28A-201ENST00000332797 DUOX2Q9NRD8 1548 aa24.25■■□□□ 1.47
CCDC28A-201ENST00000332797 ADGRL2O95490 1459 aa24.25■■□□□ 1.47
CCDC28A-201ENST00000332797 NCOA1Q15788 1441 aa24.22■■□□□ 1.47
CCDC28A-201ENST00000332797 KIF3BO15066 747 aa24.22■■□□□ 1.47
CCDC28A-201ENST00000332797 PTPRMP28827 1452 aa24.22■■□□□ 1.47
CCDC28A-201ENST00000332797 GGT6Q6P531 493 aa24.2■■□□□ 1.47
CCDC28A-201ENST00000332797 EIF2AK4Q9P2K8 1649 aaKnown RBP24.2■■□□□ 1.46
CCDC28A-201ENST00000332797 ESF1Q9H501 851 aaKnown RBP24.19■■□□□ 1.46
CCDC28A-201ENST00000332797 ERBINQ96RT1 1412 aa24.18■■□□□ 1.46
CCDC28A-201ENST00000332797 ROCK1Q13464 1354 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms