RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 ZNF644Q9H582 1327 aaPredicted RBP13.68□□□□□ -0.22
CAPN3-201ENST00000318023 CFDP1Q9UEE9 299 aaPredicted RBP13.67□□□□□ -0.22
CAPN3-201ENST00000318023 HNRNPMP52272 730 aaKnown RBP eCLIP13.66□□□□□ -0.22
CAPN3-201ENST00000318023 HECW1Q76N89 1606 aa13.66□□□□□ -0.22
CAPN3-201ENST00000318023 EFCAB2Q5VUJ9 269 aa13.65□□□□□ -0.22
CAPN3-201ENST00000318023 KDM6BO15054 1643 aa13.65□□□□□ -0.22
CAPN3-201ENST00000318023 TROQ12816 1431 aaPredicted RBP13.64□□□□□ -0.23
CAPN3-201ENST00000318023 VPS8Q8N3P4 1428 aa13.63□□□□□ -0.23
CAPN3-201ENST00000318023 MAGI3Q5TCQ9 1506 aa13.63□□□□□ -0.23
CAPN3-201ENST00000318023 KIF14Q15058 1648 aa13.62□□□□□ -0.23
CAPN3-201ENST00000318023 ITGAEP38570 1179 aa13.62□□□□□ -0.23
CAPN3-201ENST00000318023 FANCAO15360 1455 aa13.62□□□□□ -0.23
CAPN3-201ENST00000318023 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.61□□□□□ -0.23
CAPN3-201ENST00000318023 TEX14Q8IWB6 1497 aa13.61□□□□□ -0.23
CAPN3-201ENST00000318023 FYCO1Q9BQS8 1478 aa13.61□□□□□ -0.23
CAPN3-201ENST00000318023 TTC37Q6PGP7 1564 aa13.61□□□□□ -0.23
CAPN3-201ENST00000318023 CCNB3Q8WWL7 1395 aa13.61□□□□□ -0.23
CAPN3-201ENST00000318023 SCAPERQ9BY12 1400 aa13.6□□□□□ -0.23
CAPN3-201ENST00000318023 ANO8Q9HCE9 1232 aaPredicted RBP13.6□□□□□ -0.23
CAPN3-201ENST00000318023 ARHGAP5Q13017 1502 aa13.59□□□□□ -0.23
CAPN3-201ENST00000318023 AKNAQ7Z591 1439 aa13.59□□□□□ -0.23
CAPN3-201ENST00000318023 LRRIQ1Q96JM4 1722 aa13.57□□□□□ -0.24
CAPN3-201ENST00000318023 FAM50AQ14320 339 aaKnown RBP13.57□□□□□ -0.24
CAPN3-201ENST00000318023 GLI2P10070 1586 aa13.57□□□□□ -0.24
CAPN3-201ENST00000318023 CCDC18Q5T9S5 1454 aa13.56□□□□□ -0.24
CAPN3-201ENST00000318023 ADGRL1O94910 1474 aa13.56□□□□□ -0.24
CAPN3-201ENST00000318023 MAP3K4Q9Y6R4 1608 aa13.56□□□□□ -0.24
CAPN3-201ENST00000318023 PPRC1Q5VV67 1664 aaKnown RBP13.56□□□□□ -0.24
CAPN3-201ENST00000318023 BCANQ96GW7 911 aa13.55□□□□□ -0.24
CAPN3-201ENST00000318023 PLCH2O75038 1416 aa13.55□□□□□ -0.24
CAPN3-201ENST00000318023 KDM4FA0A1W2PPD8 638 aa13.55□□□□□ -0.24
CAPN3-201ENST00000318023 CHIC2Q9UKJ5 165 aa13.55□□□□□ -0.24
CAPN3-201ENST00000318023 DENND4BO75064 1496 aaPredicted RBP13.52□□□□□ -0.24
CAPN3-201ENST00000318023 ABCA9Q8IUA7 1624 aa13.52□□□□□ -0.25
CAPN3-201ENST00000318023 YEATS2Q9ULM3 1422 aa13.52□□□□□ -0.25
CAPN3-201ENST00000318023 TRAPPC8Q9Y2L5 1435 aa13.5□□□□□ -0.25
CAPN3-201ENST00000318023 CFAP43Q8NDM7 1665 aa13.5□□□□□ -0.25
CAPN3-201ENST00000318023 GPATCH8Q9UKJ3 1502 aaKnown RBP13.49□□□□□ -0.25
CAPN3-201ENST00000318023 NCOA2Q15596 1464 aa13.49□□□□□ -0.25
CAPN3-201ENST00000318023 SPAG9O60271 1321 aaKnown RBP13.49□□□□□ -0.25
CAPN3-201ENST00000318023 GGT6Q6P531 493 aa13.48□□□□□ -0.25
CAPN3-201ENST00000318023 CLSPNQ9HAW4 1339 aa13.48□□□□□ -0.25
CAPN3-201ENST00000318023 LRRC9Q6ZRR7 1453 aa13.48□□□□□ -0.25
CAPN3-201ENST00000318023 CEBPAP49715 358 aaPredicted RBP13.47□□□□□ -0.25
CAPN3-201ENST00000318023 RBM19Q9Y4C8 960 aaKnown RBP13.46□□□□□ -0.25
CAPN3-201ENST00000318023 TIAM1Q13009 1591 aa13.46□□□□□ -0.25
CAPN3-201ENST00000318023 NEO1Q92859 1461 aa13.46□□□□□ -0.26
CAPN3-201ENST00000318023 PHLDB1Q86UU1 1377 aa13.46□□□□□ -0.26
CAPN3-201ENST00000318023 ARHGEF12Q9NZN5 1544 aa13.45□□□□□ -0.26
CAPN3-201ENST00000318023 TSPY4P0CV99 314 aa13.44□□□□□ -0.26
CAPN3-201ENST00000318023 TSPY10P0CW01 314 aa13.44□□□□□ -0.26
CAPN3-201ENST00000318023 RRP7BPQ9NSQ0 103 aa13.44□□□□□ -0.26
CAPN3-201ENST00000318023 MSH5O43196 834 aa13.43□□□□□ -0.26
CAPN3-201ENST00000318023 ESF1Q9H501 851 aaKnown RBP13.43□□□□□ -0.26
CAPN3-201ENST00000318023 SYCP2Q9BX26 1530 aa13.43□□□□□ -0.26
CAPN3-201ENST00000318023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.42□□□□□ -0.26
CAPN3-201ENST00000318023 POGZQ7Z3K3 1410 aa13.42□□□□□ -0.26
CAPN3-201ENST00000318023 EHBP1L1Q8N3D4 1523 aa13.42□□□□□ -0.26
CAPN3-201ENST00000318023 ARAP3Q8WWN8 1544 aa13.41□□□□□ -0.26
CAPN3-201ENST00000318023 CCDC136Q96JN2 1154 aa13.41□□□□□ -0.26
CAPN3-201ENST00000318023 MYO5CQ9NQX4 1742 aa13.41□□□□□ -0.26
CAPN3-201ENST00000318023 KIF3BO15066 747 aa13.4□□□□□ -0.26
CAPN3-201ENST00000318023 SALL2Q9Y467 1007 aaPredicted RBP13.39□□□□□ -0.27
CAPN3-201ENST00000318023 CDC42BPBQ9Y5S2 1711 aa13.38□□□□□ -0.27
CAPN3-201ENST00000318023 SENP3Q9H4L4 574 aaPredicted RBP13.37□□□□□ -0.27
CAPN3-201ENST00000318023 ZNF518AQ6AHZ1 1483 aa13.37□□□□□ -0.27
CAPN3-201ENST00000318023 CDC42BPAQ5VT25 1732 aa13.36□□□□□ -0.27
CAPN3-201ENST00000318023 SAMD9LQ8IVG5 1584 aa13.36□□□□□ -0.27
CAPN3-201ENST00000318023 HSPA2P54652 639 aa13.36□□□□□ -0.27
CAPN3-201ENST00000318023 FRMPD1Q5SYB0 1578 aa13.36□□□□□ -0.27
CAPN3-201ENST00000318023 CAMSAP2Q08AD1 1489 aa13.35□□□□□ -0.27
CAPN3-201ENST00000318023 MYOM3Q5VTT5 1437 aa13.35□□□□□ -0.27
CAPN3-201ENST00000318023 SUPT6HQ7KZ85 1726 aaKnown RBP13.34□□□□□ -0.27
CAPN3-201ENST00000318023 ZFYVE16Q7Z3T8 1539 aa13.34□□□□□ -0.27
CAPN3-201ENST00000318023 PREX2Q70Z35 1606 aa13.34□□□□□ -0.27
CAPN3-201ENST00000318023 DEKP35659 375 aaKnown RBP13.34□□□□□ -0.27
CAPN3-201ENST00000318023 FKBP8Q14318 412 aa13.33□□□□□ -0.28
CAPN3-201ENST00000318023 ABCC1P33527 1531 aa13.33□□□□□ -0.28
CAPN3-201ENST00000318023 ATP10AO60312 1499 aa13.31□□□□□ -0.28
CAPN3-201ENST00000318023 FGD6Q6ZV73 1430 aa13.3□□□□□ -0.28
CAPN3-201ENST00000318023 RICTORQ6R327 1708 aa13.3□□□□□ -0.28
CAPN3-201ENST00000318023 MBD5Q9P267 1494 aa13.29□□□□□ -0.28
CAPN3-201ENST00000318023 CFAP74Q9C0B2 1584 aa13.29□□□□□ -0.28
CAPN3-201ENST00000318023 WASHC2CQ9Y4E1 1318 aa13.27□□□□□ -0.28
CAPN3-201ENST00000318023 C9orf84Q5VXU9 1444 aa13.27□□□□□ -0.29
CAPN3-201ENST00000318023 FBXO31Q5XUX0 539 aaPredicted RBP13.27□□□□□ -0.29
CAPN3-201ENST00000318023 KIAA1107Q9UPP5 1409 aa13.27□□□□□ -0.29
CAPN3-201ENST00000318023 CCDC141Q6ZP82 1450 aa13.26□□□□□ -0.29
CAPN3-201ENST00000318023 PLEKHH2Q8IVE3 1493 aa13.26□□□□□ -0.29
CAPN3-201ENST00000318023 ARHGEF40Q8TER5 1519 aa13.25□□□□□ -0.29
CAPN3-201ENST00000318023 ABCC5O15440 1437 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.24□□□□□ -0.29
CAPN3-201ENST00000318023 SIGLEC1Q9BZZ2 1709 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 HECW2Q9P2P5 1572 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 RSPH4AQ5TD94 716 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 A2MP01023 1474 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 ATP7AQ04656 1500 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 KIF15Q9NS87 1388 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 MLH3Q9UHC1 1453 aa13.24□□□□□ -0.29
CAPN3-201ENST00000318023 MAP3K1Q13233 1512 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms