RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 ANKRD30BQ9BXX2 1392 aa26.41■■□□□ 1.82
RTN4-201ENST00000317610 DNMT1P26358 1616 aaKnown RBP26.4■■□□□ 1.82
RTN4-201ENST00000317610 DAPK1P53355 1430 aa26.38■■□□□ 1.81
RTN4-201ENST00000317610 FANCIQ9NVI1 1328 aa26.37■■□□□ 1.81
RTN4-201ENST00000317610 PRKRIP1Q9H875 184 aaPredicted RBP26.37■■□□□ 1.81
RTN4-201ENST00000317610 C11orf95C9JLR9 678 aaPredicted RBP26.37■■□□□ 1.81
RTN4-201ENST00000317610 CCDC184Q52MB2 194 aa26.35■■□□□ 1.81
RTN4-201ENST00000317610 SPATA31E1Q6ZUB1 1445 aa26.35■■□□□ 1.81
RTN4-201ENST00000317610 CDK11AQ9UQ88 783 aaPredicted RBP26.34■■□□□ 1.81
RTN4-201ENST00000317610 ABCC5O15440 1437 aa26.32■■□□□ 1.8
RTN4-201ENST00000317610 MSH5O43196 834 aa26.32■■□□□ 1.8
RTN4-201ENST00000317610 IRX6P78412 446 aaPredicted RBP26.31■■□□□ 1.8
RTN4-201ENST00000317610 NBPF8Q3BBV2 869 aa26.31■■□□□ 1.8
RTN4-201ENST00000317610 PPP4R2Q9NY27 417 aa26.31■■□□□ 1.8
RTN4-201ENST00000317610 ZBED9Q6R2W3 1325 aa26.31■■□□□ 1.8
RTN4-201ENST00000317610 FOXD1Q16676 465 aa26.3■■□□□ 1.8
RTN4-201ENST00000317610 KIAA0556O60303 1618 aa26.25■■□□□ 1.79
RTN4-201ENST00000317610 KIF7Q2M1P5 1343 aa26.24■■□□□ 1.79
RTN4-201ENST00000317610 MRS2Q9HD23 443 aa26.24■■□□□ 1.79
RTN4-201ENST00000317610 NUP153P49790 1475 aaKnown RBP26.22■■□□□ 1.79
RTN4-201ENST00000317610 DISP1Q96F81 1524 aa26.22■■□□□ 1.79
RTN4-201ENST00000317610 PZPP20742 1482 aa26.2■■□□□ 1.78
RTN4-201ENST00000317610 MBD5Q9P267 1494 aa26.2■■□□□ 1.78
RTN4-201ENST00000317610 RAPGEF6Q8TEU7 1601 aa26.2■■□□□ 1.78
RTN4-201ENST00000317610 FAM9BQ8IZU0 186 aa26.2■■□□□ 1.78
RTN4-201ENST00000317610 KIAA0586Q9BVV6 1533 aa26.18■■□□□ 1.78
RTN4-201ENST00000317610 ADGBQ8N7X0 1667 aa26.17■■□□□ 1.78
RTN4-201ENST00000317610 SLC4A1APQ9BWU0 796 aaKnown RBP26.17■■□□□ 1.78
RTN4-201ENST00000317610 MRC2Q9UBG0 1479 aa26.16■■□□□ 1.78
RTN4-201ENST00000317610 ZNF644Q9H582 1327 aaPredicted RBP26.15■■□□□ 1.78
RTN4-201ENST00000317610 ARID3CA6NKF2 412 aa26.14■■□□□ 1.78
RTN4-201ENST00000317610 DNAJC5BQ9UF47 199 aa26.13■■□□□ 1.77
RTN4-201ENST00000317610 ITSN2Q9NZM3 1697 aa26.13■■□□□ 1.77
RTN4-201ENST00000317610 DHX29Q7Z478 1369 aaKnown RBP26.12■■□□□ 1.77
RTN4-201ENST00000317610 ADGRL2O95490 1459 aa26.11■■□□□ 1.77
RTN4-201ENST00000317610 CAMSAP2Q08AD1 1489 aa26.1■■□□□ 1.77
RTN4-201ENST00000317610 CROCC2H7BZ55 1655 aa26.1■■□□□ 1.77
RTN4-201ENST00000317610 KIF14Q15058 1648 aa26.1■■□□□ 1.77
RTN4-201ENST00000317610 SMG6Q86US8 1419 aaKnown RBP26.1■■□□□ 1.77
RTN4-201ENST00000317610 BCL11AQ9H165 835 aa26.09■■□□□ 1.77
RTN4-201ENST00000317610 BCORL1Q5H9F3 1711 aa26.09■■□□□ 1.77
RTN4-201ENST00000317610 TROQ12816 1431 aaPredicted RBP26.08■■□□□ 1.77
RTN4-201ENST00000317610 KIAA1107Q9UPP5 1409 aa26.08■■□□□ 1.77
RTN4-201ENST00000317610 IFT140Q96RY7 1462 aa26.08■■□□□ 1.77
RTN4-201ENST00000317610 ADCY10Q96PN6 1610 aa26.08■■□□□ 1.77
RTN4-201ENST00000317610 KDM5CP41229 1560 aa26.06■■□□□ 1.76
RTN4-201ENST00000317610 ARID4BQ4LE39 1312 aaPredicted RBP26.05■■□□□ 1.76
RTN4-201ENST00000317610 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
RTN4-201ENST00000317610 B4GALNT3Q6L9W6 998 aa26.04■■□□□ 1.76
RTN4-201ENST00000317610 USP47Q96K76 1375 aa26.03■■□□□ 1.76
RTN4-201ENST00000317610 GPATCH8Q9UKJ3 1502 aaKnown RBP26.02■■□□□ 1.76
RTN4-201ENST00000317610 GRIN2AQ12879 1464 aa26.01■■□□□ 1.76
RTN4-201ENST00000317610 RNF123Q5XPI4 1314 aa26.01■■□□□ 1.75
RTN4-201ENST00000317610 PRG4Q92954 1404 aaPredicted RBP26.01■■□□□ 1.75
RTN4-201ENST00000317610 UHRF1BP1Q6BDS2 1440 aa26■■□□□ 1.75
RTN4-201ENST00000317610 ERICH6Q7L0X2 663 aa25.99■■□□□ 1.75
RTN4-201ENST00000317610 CFDP1Q9UEE9 299 aaPredicted RBP25.97■■□□□ 1.75
RTN4-201ENST00000317610 NUDCQ9Y266 331 aa25.96■■□□□ 1.75
RTN4-201ENST00000317610 RALGAPBQ86X10 1494 aa25.96■■□□□ 1.75
RTN4-201ENST00000317610 ROCK2O75116 1388 aaKnown RBP25.94■■□□□ 1.74
RTN4-201ENST00000317610 ANKRD30AQ9BXX3 1397 aa25.93■■□□□ 1.74
RTN4-201ENST00000317610 ARHGEF12Q9NZN5 1544 aa25.93■■□□□ 1.74
RTN4-201ENST00000317610 EIF4G3O43432 1585 aaKnown RBP25.91■■□□□ 1.74
RTN4-201ENST00000317610 PKD2Q13563 968 aa25.91■■□□□ 1.74
RTN4-201ENST00000317610 ANKRD50Q9ULJ7 1429 aa25.9■■□□□ 1.74
RTN4-201ENST00000317610 SHANK2Q9UPX8 1470 aa25.9■■□□□ 1.74
RTN4-201ENST00000317610 KDM5DQ9BY66 1539 aa25.89■■□□□ 1.74
RTN4-201ENST00000317610 PLB1Q6P1J6 1458 aa25.89■■□□□ 1.73
RTN4-201ENST00000317610 MYT1LQ9UL68 1186 aa25.88■■□□□ 1.73
RTN4-201ENST00000317610 CDC42BPAQ5VT25 1732 aa25.87■■□□□ 1.73
RTN4-201ENST00000317610 PNISRQ8TF01 805 aaKnown RBP25.86■■□□□ 1.73
RTN4-201ENST00000317610 CEP170Q5SW79 1584 aa25.85■■□□□ 1.73
RTN4-201ENST00000317610 MAGI1Q96QZ7 1491 aaPredicted RBP25.83■■□□□ 1.73
RTN4-201ENST00000317610 E9PCH4 1651 aa25.83■■□□□ 1.72
RTN4-201ENST00000317610 LRPPRCP42704 1394 aaKnown RBP25.82■■□□□ 1.72
RTN4-201ENST00000317610 KIF15Q9NS87 1388 aa25.82■■□□□ 1.72
RTN4-201ENST00000317610 KTN1Q86UP2 1357 aaKnown RBP25.82■■□□□ 1.72
RTN4-201ENST00000317610 ZNF326Q5BKZ1 582 aaKnown RBP25.81■■□□□ 1.72
RTN4-201ENST00000317610 ABCC10Q5T3U5 1492 aa25.8■■□□□ 1.72
RTN4-201ENST00000317610 ZNF777Q9ULD5 760 aaPredicted RBP25.79■■□□□ 1.72
RTN4-201ENST00000317610 C9orf84Q5VXU9 1444 aa25.78■■□□□ 1.72
RTN4-201ENST00000317610 PTPRGP23470 1445 aa25.78■■□□□ 1.72
RTN4-201ENST00000317610 POLR3GLQ9BT43 218 aa25.77■■□□□ 1.72
RTN4-201ENST00000317610 BRD4O60885 1362 aaPredicted RBP25.77■■□□□ 1.72
RTN4-201ENST00000317610 NUP155O75694 1391 aa25.77■■□□□ 1.72
RTN4-201ENST00000317610 SYNJ2O15056 1496 aa25.76■■□□□ 1.71
RTN4-201ENST00000317610 CCDC136Q96JN2 1154 aa25.76■■□□□ 1.71
RTN4-201ENST00000317610 CARMIL2Q6F5E8 1435 aa25.75■■□□□ 1.71
RTN4-201ENST00000317610 TMC1Q8TDI8 760 aa25.75■■□□□ 1.71
RTN4-201ENST00000317610 CARD11Q9BXL7 1154 aa25.75■■□□□ 1.71
RTN4-201ENST00000317610 NOP58Q9Y2X3 529 aaKnown RBP25.75■■□□□ 1.71
RTN4-201ENST00000317610 ABCA8O94911 1581 aa25.74■■□□□ 1.71
RTN4-201ENST00000317610 MYBBP1AQ9BQG0 1328 aaKnown RBP25.73■■□□□ 1.71
RTN4-201ENST00000317610 RALBP1Q15311 655 aa25.72■■□□□ 1.71
RTN4-201ENST00000317610 ARHGEF5Q12774 1597 aa25.72■■□□□ 1.71
RTN4-201ENST00000317610 NUP160Q12769 1436 aa25.72■■□□□ 1.71
RTN4-201ENST00000317610 CNGB1Q14028 1251 aaPredicted RBP25.7■■□□□ 1.7
RTN4-201ENST00000317610 ST20-MTHFSA0A0A6YYL1 179 aa25.68■■□□□ 1.7
RTN4-201ENST00000317610 ATP10BO94823 1461 aa25.66■■□□□ 1.7
RTN4-201ENST00000317610 PLEKHD1A6NEE1 506 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms