RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TAF3Q5VWG9 929 aa9.62□□□□□ -0.87
LIMCH1-201ENST00000313860 NF2P35240 595 aa9.61□□□□□ -0.87
LIMCH1-201ENST00000313860 FAM50AQ14320 339 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-201ENST00000313860 RSPH6AQ9H0K4 717 aa9.61□□□□□ -0.87
LIMCH1-201ENST00000313860 SOGA3Q5TF21 947 aa9.61□□□□□ -0.87
LIMCH1-201ENST00000313860 CCDC175P0C221 793 aa9.61□□□□□ -0.87
LIMCH1-201ENST00000313860 PRKCSHP14314 528 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 IBSPP21815 317 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 MNS1Q8NEH6 495 aa9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 TPM4P67936 248 aa9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 CC2D1BQ5T0F9 858 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 KCNJ4P48050 445 aa9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 FAM13BQ9NYF5 915 aa9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 TICAM2Q86XR7 235 aa9.6□□□□□ -0.87
LIMCH1-201ENST00000313860 CNKSR2Q8WXI2 1034 aa9.59□□□□□ -0.87
LIMCH1-201ENST00000313860 ZNF592Q92610 1267 aa9.59□□□□□ -0.87
LIMCH1-201ENST00000313860 PDCL3Q9H2J4 239 aa9.59□□□□□ -0.87
LIMCH1-201ENST00000313860 GPATCH11Q8N954 259 aa9.59□□□□□ -0.87
LIMCH1-201ENST00000313860 USP8P40818 1118 aa9.58□□□□□ -0.88
LIMCH1-201ENST00000313860 ZRSR2Q15696 482 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-201ENST00000313860 PLPPR3Q6T4P5 718 aa9.58□□□□□ -0.88
LIMCH1-201ENST00000313860 PES1O00541 588 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-201ENST00000313860 CALD1Q05682 793 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-201ENST00000313860 OS9Q13438 667 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-201ENST00000313860 CCDC70Q6NSX1 233 aa9.56□□□□□ -0.88
LIMCH1-201ENST00000313860 NPHP1O15259 732 aa9.55□□□□□ -0.88
LIMCH1-201ENST00000313860 CFAP53Q96M91 514 aa9.55□□□□□ -0.88
LIMCH1-201ENST00000313860 RUFY1Q96T51 708 aa9.55□□□□□ -0.88
LIMCH1-201ENST00000313860 CCDC66A2RUB6 948 aa9.54□□□□□ -0.88
LIMCH1-201ENST00000313860 DCTN1Q14203 1278 aa9.54□□□□□ -0.88
LIMCH1-201ENST00000313860 RASSF8Q8NHQ8 419 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 TCHPQ9BT92 498 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 GSE1Q14687 1217 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 RALBP1Q15311 655 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 HSCBQ8IWL3 235 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 INCENPQ9NQS7 918 aa9.53□□□□□ -0.88
LIMCH1-201ENST00000313860 DNAI2Q9GZS0 605 aa9.52□□□□□ -0.88
LIMCH1-201ENST00000313860 GOLGA2Q08379 1002 aa9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 SUDS3Q9H7L9 328 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 CWC15Q9P013 229 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 RGS3P49796 1198 aa9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 CCDC9Q9Y3X0 531 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 ANKRD62A6NC57 917 aa9.52□□□□□ -0.89
LIMCH1-201ENST00000313860 HMGN5P82970 282 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-201ENST00000313860 IPO4Q8TEX9 1081 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-201ENST00000313860 SENP3-EIF4A1A0A087X0R7 540 aa9.51□□□□□ -0.89
LIMCH1-201ENST00000313860 MPHOSPH10O00566 681 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-201ENST00000313860 LMOD3Q0VAK6 560 aa9.51□□□□□ -0.89
LIMCH1-201ENST00000313860 CENPHQ9H3R5 247 aa9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 CDR1P51861 262 aa9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 PUS7Q96PZ0 661 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 E9PSI1 815 aa9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 HOMER1Q86YM7 354 aa9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 FTSJ3Q8IY81 847 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 CHMP4AQ9BY43 222 aa9.5□□□□□ -0.89
LIMCH1-201ENST00000313860 FAM184BQ9ULE4 1060 aa9.49□□□□□ -0.89
LIMCH1-201ENST00000313860 GOLGA6L9A6NEM1 432 aa9.49□□□□□ -0.89
LIMCH1-201ENST00000313860 SEPT10Q9P0V9 454 aa9.49□□□□□ -0.89
LIMCH1-201ENST00000313860 CFAP44Q96MT7 982 aa9.49□□□□□ -0.89
LIMCH1-201ENST00000313860 ARGLU1Q9NWB6 273 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-201ENST00000313860 PAXIP1Q6ZW49 1069 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-201ENST00000313860 SYAP1Q96A49 352 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-201ENST00000313860 CCDC97Q96F63 343 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-201ENST00000313860 CEP63Q96MT8 703 aa9.47□□□□□ -0.89
LIMCH1-201ENST00000313860 SEPT6Q14141 434 aa9.47□□□□□ -0.89
LIMCH1-201ENST00000313860 DZIP1Q86YF9 867 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-201ENST00000313860 SPATA24Q86W54 205 aa9.46□□□□□ -0.89
LIMCH1-201ENST00000313860 VPS53Q5VIR6 699 aa9.46□□□□□ -0.89
LIMCH1-201ENST00000313860 DDX23Q9BUQ8 820 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-201ENST00000313860 CSRNP3Q8WYN3 585 aa9.46□□□□□ -0.9
LIMCH1-201ENST00000313860 BBXQ8WY36 941 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-201ENST00000313860 DEF6Q9H4E7 631 aa9.45□□□□□ -0.9
LIMCH1-201ENST00000313860 SEPT8Q92599 483 aa9.45□□□□□ -0.9
LIMCH1-201ENST00000313860 TSR1Q2NL82 804 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-201ENST00000313860 MYO6Q9UM54 1294 aa9.44□□□□□ -0.9
LIMCH1-201ENST00000313860 KIF20AO95235 890 aa9.44□□□□□ -0.9
LIMCH1-201ENST00000313860 TPD52L1Q16890 204 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-201ENST00000313860 HSP90B2PQ58FF3 399 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 CFAP57Q96MR6 1250 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 IPO9Q96P70 1041 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 DIAPH3Q9NSV4 1193 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 MKL2Q9ULH7 1088 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 ENOX2Q16206 610 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 HOMEZQ8IX15 550 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 TMC1Q8TDI8 760 aa9.43□□□□□ -0.9
LIMCH1-201ENST00000313860 GOLGA6L10A0A0M3HER8 536 aa9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 GOLGA6L10A6NI86 522 aa9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 GOLGA6L19H0YKK7 550 aa9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 RBM19Q9Y4C8 960 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 PCMTD1Q96MG8 357 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 LEKR1Q6ZMV7 388 aa9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 PRKG1Q13976 671 aa9.42□□□□□ -0.9
LIMCH1-201ENST00000313860 TMCO5BA8MYB1 307 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 KIF3AQ9Y496 699 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 HSP90AB2PQ58FF8 381 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 NAP1L1P55209 391 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 FAM114A1Q8IWE2 563 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 PPP4R2Q9NY27 417 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 MRVI1Q9Y6F6 885 aa9.41□□□□□ -0.9
LIMCH1-201ENST00000313860 KIAA0754O94854 1291 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms