RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 KIF13AQ9H1H9 1805 aa12.9□□□□□ -0.34
PTPDC1-201ENST00000288976 PLCH2O75038 1416 aa12.9□□□□□ -0.34
PTPDC1-201ENST00000288976 PLEKHH2Q8IVE3 1493 aa12.9□□□□□ -0.34
PTPDC1-201ENST00000288976 DNMT1P26358 1616 aaKnown RBP12.89□□□□□ -0.35
PTPDC1-201ENST00000288976 SAMD9LQ8IVG5 1584 aa12.88□□□□□ -0.35
PTPDC1-201ENST00000288976 ARID3CA6NKF2 412 aa12.88□□□□□ -0.35
PTPDC1-201ENST00000288976 TRIM26Q12899 539 aaPredicted RBP12.88□□□□□ -0.35
PTPDC1-201ENST00000288976 CAMSAP2Q08AD1 1489 aa12.88□□□□□ -0.35
PTPDC1-201ENST00000288976 ABCC1P33527 1531 aa12.86□□□□□ -0.35
PTPDC1-201ENST00000288976 ARHGAP5Q13017 1502 aa12.86□□□□□ -0.35
PTPDC1-201ENST00000288976 PPRC1Q5VV67 1664 aaKnown RBP12.86□□□□□ -0.35
PTPDC1-201ENST00000288976 ADGBQ8N7X0 1667 aa12.86□□□□□ -0.35
PTPDC1-201ENST00000288976 SHANK2Q9UPX8 1470 aa12.86□□□□□ -0.35
PTPDC1-201ENST00000288976 MAST1Q9Y2H9 1570 aa12.85□□□□□ -0.35
PTPDC1-201ENST00000288976 KIAA1107Q9UPP5 1409 aa12.85□□□□□ -0.35
PTPDC1-201ENST00000288976 NEO1Q92859 1461 aa12.85□□□□□ -0.35
PTPDC1-201ENST00000288976 TEX14Q8IWB6 1497 aa12.82□□□□□ -0.36
PTPDC1-201ENST00000288976 CD109Q6YHK3 1445 aa12.81□□□□□ -0.36
PTPDC1-201ENST00000288976 AKNAQ7Z591 1439 aa12.81□□□□□ -0.36
PTPDC1-201ENST00000288976 PPARGC1BQ86YN6 1023 aaKnown RBP12.81□□□□□ -0.36
PTPDC1-201ENST00000288976 FANCAO15360 1455 aa12.81□□□□□ -0.36
PTPDC1-201ENST00000288976 GCC2Q8IWJ2 1684 aa12.8□□□□□ -0.36
PTPDC1-201ENST00000288976 ADGRL2O95490 1459 aa12.79□□□□□ -0.36
PTPDC1-201ENST00000288976 CFDP1Q9UEE9 299 aaPredicted RBP12.79□□□□□ -0.36
PTPDC1-201ENST00000288976 DAPK1P53355 1430 aa12.79□□□□□ -0.36
PTPDC1-201ENST00000288976 SYCP2Q9BX26 1530 aa12.79□□□□□ -0.36
PTPDC1-201ENST00000288976 PLXNC1O60486 1568 aa12.79□□□□□ -0.36
PTPDC1-201ENST00000288976 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
PTPDC1-201ENST00000288976 CCDC141Q6ZP82 1450 aa12.78□□□□□ -0.36
PTPDC1-201ENST00000288976 KDM5CP41229 1560 aa12.77□□□□□ -0.36
PTPDC1-201ENST00000288976 RSPH4AQ5TD94 716 aa12.77□□□□□ -0.37
PTPDC1-201ENST00000288976 KCNH8Q96L42 1107 aa12.77□□□□□ -0.37
PTPDC1-201ENST00000288976 ROCK1Q13464 1354 aa12.77□□□□□ -0.37
PTPDC1-201ENST00000288976 INO80Q9ULG1 1556 aaPredicted RBP12.76□□□□□ -0.37
PTPDC1-201ENST00000288976 EFCAB2Q5VUJ9 269 aa12.76□□□□□ -0.37
PTPDC1-201ENST00000288976 ABCC5O15440 1437 aa12.75□□□□□ -0.37
PTPDC1-201ENST00000288976 RICTORQ6R327 1708 aa12.75□□□□□ -0.37
PTPDC1-201ENST00000288976 ADGRL1O94910 1474 aa12.75□□□□□ -0.37
PTPDC1-201ENST00000288976 ZMYM4Q5VZL5 1548 aa12.75□□□□□ -0.37
PTPDC1-201ENST00000288976 ARHGEF12Q9NZN5 1544 aa12.74□□□□□ -0.37
PTPDC1-201ENST00000288976 RTEL1-TNFRSF6BF6WH68 1400 aa12.74□□□□□ -0.37
PTPDC1-201ENST00000288976 ZNF518AQ6AHZ1 1483 aa12.73□□□□□ -0.37
PTPDC1-201ENST00000288976 POGZQ7Z3K3 1410 aa12.73□□□□□ -0.37
PTPDC1-201ENST00000288976 ZFYVE16Q7Z3T8 1539 aa12.73□□□□□ -0.37
PTPDC1-201ENST00000288976 FRMPD1Q5SYB0 1578 aa12.72□□□□□ -0.37
PTPDC1-201ENST00000288976 HECW2Q9P2P5 1572 aa12.71□□□□□ -0.37
PTPDC1-201ENST00000288976 HFM1A2PYH4 1435 aa12.71□□□□□ -0.37
PTPDC1-201ENST00000288976 ACIN1Q9UKV3 1341 aaKnown RBP12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 FAM69CQ0P6D2 419 aa12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 PTPRKQ15262 1439 aa12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 C9orf84Q5VXU9 1444 aa12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 BCORL1Q5H9F3 1711 aa12.7□□□□□ -0.38
PTPDC1-201ENST00000288976 EIF2AK4Q9P2K8 1649 aaKnown RBP12.69□□□□□ -0.38
PTPDC1-201ENST00000288976 ATP7AQ04656 1500 aa12.69□□□□□ -0.38
PTPDC1-201ENST00000288976 DENND4BO75064 1496 aaPredicted RBP12.69□□□□□ -0.38
PTPDC1-201ENST00000288976 MLH3Q9UHC1 1453 aa12.68□□□□□ -0.38
PTPDC1-201ENST00000288976 ZNF644Q9H582 1327 aaPredicted RBP12.68□□□□□ -0.38
PTPDC1-201ENST00000288976 SCAPERQ9BY12 1400 aa12.68□□□□□ -0.38
PTPDC1-201ENST00000288976 MAGI2Q86UL8 1455 aa12.67□□□□□ -0.38
PTPDC1-201ENST00000288976 REREQ9P2R6 1566 aa12.67□□□□□ -0.38
PTPDC1-201ENST00000288976 KIDINS220Q9ULH0 1771 aa12.67□□□□□ -0.38
PTPDC1-201ENST00000288976 DUOX2Q9NRD8 1548 aa12.67□□□□□ -0.38
PTPDC1-201ENST00000288976 TRAPPC8Q9Y2L5 1435 aa12.66□□□□□ -0.38
PTPDC1-201ENST00000288976 ANKRD30AQ9BXX3 1397 aa12.66□□□□□ -0.38
PTPDC1-201ENST00000288976 HRCP23327 699 aa12.66□□□□□ -0.38
PTPDC1-201ENST00000288976 NCOA1Q15788 1441 aa12.65□□□□□ -0.38
PTPDC1-201ENST00000288976 ZNF777Q9ULD5 760 aaPredicted RBP12.65□□□□□ -0.38
PTPDC1-201ENST00000288976 ERBINQ96RT1 1412 aa12.65□□□□□ -0.38
PTPDC1-201ENST00000288976 SETD5Q9C0A6 1442 aa12.64□□□□□ -0.39
PTPDC1-201ENST00000288976 NAIPQ13075 1403 aa12.64□□□□□ -0.39
PTPDC1-201ENST00000288976 UNC13BO14795 1591 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 ABCA6Q8N139 1617 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 MYT1LQ9UL68 1186 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 DEPDC5O75140 1603 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 ARHGEF40Q8TER5 1519 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 KDM5DQ9BY66 1539 aa12.63□□□□□ -0.39
PTPDC1-201ENST00000288976 DIP2CQ9Y2E4 1556 aa12.62□□□□□ -0.39
PTPDC1-201ENST00000288976 HNRNPMP52272 730 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTPDC1-201ENST00000288976 RNF17Q9BXT8 1623 aaKnown RBP12.61□□□□□ -0.39
PTPDC1-201ENST00000288976 TSPY4P0CV99 314 aa12.61□□□□□ -0.39
PTPDC1-201ENST00000288976 TSPY10P0CW01 314 aa12.61□□□□□ -0.39
PTPDC1-201ENST00000288976 KDM6BO15054 1643 aa12.6□□□□□ -0.39
PTPDC1-201ENST00000288976 FAM135AQ9P2D6 1515 aa12.59□□□□□ -0.39
PTPDC1-201ENST00000288976 SPAG9O60271 1321 aaKnown RBP12.58□□□□□ -0.4
PTPDC1-201ENST00000288976 KIF15Q9NS87 1388 aa12.58□□□□□ -0.4
PTPDC1-201ENST00000288976 RAB3GAP2Q9H2M9 1393 aa12.57□□□□□ -0.4
PTPDC1-201ENST00000288976 IQGAP3Q86VI3 1631 aa12.56□□□□□ -0.4
PTPDC1-201ENST00000288976 AGLP35573 1532 aa12.56□□□□□ -0.4
PTPDC1-201ENST00000288976 ANKRD50Q9ULJ7 1429 aa12.56□□□□□ -0.4
PTPDC1-201ENST00000288976 PRDM15P57071 1507 aaPredicted RBP12.56□□□□□ -0.4
PTPDC1-201ENST00000288976 ZC3H13Q5T200 1668 aaKnown RBP12.56□□□□□ -0.4
PTPDC1-201ENST00000288976 VWDEQ8N2E2 1590 aa12.55□□□□□ -0.4
PTPDC1-201ENST00000288976 A2MP01023 1474 aa12.54□□□□□ -0.4
PTPDC1-201ENST00000288976 DHX29Q7Z478 1369 aaKnown RBP12.54□□□□□ -0.4
PTPDC1-201ENST00000288976 ATP10AO60312 1499 aa12.54□□□□□ -0.4
PTPDC1-201ENST00000288976 COL17A1Q9UMD9 1497 aaPredicted RBP12.53□□□□□ -0.4
PTPDC1-201ENST00000288976 ITGAEP38570 1179 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms