RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SIGLEC1Q9BZZ2 1709 aa20.94■□□□□ 0.94
CD44-203ENST00000278386 CLIP1P30622 1438 aa20.94■□□□□ 0.94
CD44-203ENST00000278386 POGZQ7Z3K3 1410 aa20.94■□□□□ 0.94
CD44-203ENST00000278386 TROQ12816 1431 aaPredicted RBP20.93■□□□□ 0.94
CD44-203ENST00000278386 SCAPERQ9BY12 1400 aa20.92■□□□□ 0.94
CD44-203ENST00000278386 YEATS2Q9ULM3 1422 aa20.92■□□□□ 0.94
CD44-203ENST00000278386 FER1L4A9Z1Z3 1794 aa20.91■□□□□ 0.94
CD44-203ENST00000278386 ARHGAP5Q13017 1502 aa20.91■□□□□ 0.94
CD44-203ENST00000278386 MAGI2Q86UL8 1455 aa20.91■□□□□ 0.94
CD44-203ENST00000278386 CCDC18Q5T9S5 1454 aa20.89■□□□□ 0.94
CD44-203ENST00000278386 CDC42BPBQ9Y5S2 1711 aa20.88■□□□□ 0.93
CD44-203ENST00000278386 PREX2Q70Z35 1606 aa20.86■□□□□ 0.93
CD44-203ENST00000278386 EFCAB2Q5VUJ9 269 aa20.86■□□□□ 0.93
CD44-203ENST00000278386 CASKIN1Q8WXD9 1431 aa20.86■□□□□ 0.93
CD44-203ENST00000278386 ZNF518AQ6AHZ1 1483 aa20.83■□□□□ 0.93
CD44-203ENST00000278386 FYCO1Q9BQS8 1478 aa20.83■□□□□ 0.93
CD44-203ENST00000278386 KDM5CP41229 1560 aa20.82■□□□□ 0.92
CD44-203ENST00000278386 ILDR1Q86SU0 546 aaPredicted RBP20.82■□□□□ 0.92
CD44-203ENST00000278386 CDC42BPAQ5VT25 1732 aa20.81■□□□□ 0.92
CD44-203ENST00000278386 C9orf84Q5VXU9 1444 aa20.81■□□□□ 0.92
CD44-203ENST00000278386 ITSN2Q9NZM3 1697 aa20.81■□□□□ 0.92
CD44-203ENST00000278386 PLPPR3Q6T4P5 718 aa20.8■□□□□ 0.92
CD44-203ENST00000278386 MLECQ14165 292 aa20.79■□□□□ 0.92
CD44-203ENST00000278386 ATP10AO60312 1499 aa20.79■□□□□ 0.92
CD44-203ENST00000278386 LMTK3Q96Q04 1460 aa20.79■□□□□ 0.92
CD44-203ENST00000278386 ABCC1P33527 1531 aa20.78■□□□□ 0.92
CD44-203ENST00000278386 DIP2CQ9Y2E4 1556 aa20.76■□□□□ 0.91
CD44-203ENST00000278386 ABCA6Q8N139 1617 aa20.75■□□□□ 0.91
CD44-203ENST00000278386 ARHGEF12Q9NZN5 1544 aa20.75■□□□□ 0.91
CD44-203ENST00000278386 MYT1LQ9UL68 1186 aa20.75■□□□□ 0.91
CD44-203ENST00000278386 AFAP1Q8N556 730 aa20.71■□□□□ 0.91
CD44-203ENST00000278386 REREQ9P2R6 1566 aa20.7■□□□□ 0.9
CD44-203ENST00000278386 PREX1Q8TCU6 1659 aa20.7■□□□□ 0.9
CD44-203ENST00000278386 TRAPPC8Q9Y2L5 1435 aa20.68■□□□□ 0.9
CD44-203ENST00000278386 MLH3Q9UHC1 1453 aa20.68■□□□□ 0.9
CD44-203ENST00000278386 SAMD9LQ8IVG5 1584 aa20.68■□□□□ 0.9
CD44-203ENST00000278386 KIDINS220Q9ULH0 1771 aa20.67■□□□□ 0.9
CD44-203ENST00000278386 SYCP2Q9BX26 1530 aa20.66■□□□□ 0.9
CD44-203ENST00000278386 HSPA2P54652 639 aa20.63■□□□□ 0.89
CD44-203ENST00000278386 ZNF777Q9ULD5 760 aaPredicted RBP20.62■□□□□ 0.89
CD44-203ENST00000278386 C3P01024 1663 aa20.61■□□□□ 0.89
CD44-203ENST00000278386 GPATCH8Q9UKJ3 1502 aaKnown RBP20.61■□□□□ 0.89
CD44-203ENST00000278386 MTUS2Q5JR59 1369 aa20.6■□□□□ 0.89
CD44-203ENST00000278386 AGLP35573 1532 aa20.6■□□□□ 0.89
CD44-203ENST00000278386 EHBP1L1Q8N3D4 1523 aa20.59■□□□□ 0.89
CD44-203ENST00000278386 SUPT6HQ7KZ85 1726 aaKnown RBP20.58■□□□□ 0.88
CD44-203ENST00000278386 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.88
CD44-203ENST00000278386 CEP162Q5TB80 1403 aa20.57■□□□□ 0.88
CD44-203ENST00000278386 TIAM1Q13009 1591 aa20.56■□□□□ 0.88
CD44-203ENST00000278386 CEBPAP49715 358 aaPredicted RBP20.56■□□□□ 0.88
CD44-203ENST00000278386 ATP7AQ04656 1500 aa20.56■□□□□ 0.88
CD44-203ENST00000278386 PLEKHH2Q8IVE3 1493 aa20.56■□□□□ 0.88
CD44-203ENST00000278386 INO80Q9ULG1 1556 aaPredicted RBP20.55■□□□□ 0.88
CD44-203ENST00000278386 SETD1BQ9UPS6 1966 aaKnown RBP20.55■□□□□ 0.88
CD44-203ENST00000278386 ESF1Q9H501 851 aaKnown RBP20.54■□□□□ 0.88
CD44-203ENST00000278386 UHRF1BP1Q6BDS2 1440 aa20.53■□□□□ 0.88
CD44-203ENST00000278386 FBXO41Q8TF61 875 aa20.53■□□□□ 0.88
CD44-203ENST00000278386 CFDP1Q9UEE9 299 aaPredicted RBP20.53■□□□□ 0.88
CD44-203ENST00000278386 SPAG9O60271 1321 aaKnown RBP20.52■□□□□ 0.87
CD44-203ENST00000278386 MROH2AA6NES4 1674 aa20.51■□□□□ 0.87
CD44-203ENST00000278386 HNRNPMP52272 730 aaKnown RBP eCLIP20.51■□□□□ 0.87
CD44-203ENST00000278386 ADGBQ8N7X0 1667 aa20.5■□□□□ 0.87
CD44-203ENST00000278386 KIAA1107Q9UPP5 1409 aa20.5■□□□□ 0.87
CD44-203ENST00000278386 PLXNC1O60486 1568 aa20.49■□□□□ 0.87
CD44-203ENST00000278386 STRCQ7RTU9 1775 aa20.49■□□□□ 0.87
CD44-203ENST00000278386 CNTLNQ9NXG0 1405 aa20.48■□□□□ 0.87
CD44-203ENST00000278386 CLTCQ00610 1675 aaKnown RBP20.48■□□□□ 0.87
CD44-203ENST00000278386 A2MP01023 1474 aa20.44■□□□□ 0.86
CD44-203ENST00000278386 NCOA2Q15596 1464 aa20.4■□□□□ 0.86
CD44-203ENST00000278386 CAMSAP2Q08AD1 1489 aa20.39■□□□□ 0.85
CD44-203ENST00000278386 ZNF644Q9H582 1327 aaPredicted RBP20.39■□□□□ 0.85
CD44-203ENST00000278386 MYO3AQ8NEV4 1616 aa20.38■□□□□ 0.85
CD44-203ENST00000278386 MBD5Q9P267 1494 aa20.37■□□□□ 0.85
CD44-203ENST00000278386 NPATQ14207 1427 aa20.36■□□□□ 0.85
CD44-203ENST00000278386 ZNF142P52746 1687 aaPredicted RBP20.36■□□□□ 0.85
CD44-203ENST00000278386 CCDC141Q6ZP82 1450 aa20.36■□□□□ 0.85
CD44-203ENST00000278386 VPS8Q8N3P4 1428 aa20.36■□□□□ 0.85
CD44-203ENST00000278386 DMRT2Q9Y5R5 561 aa20.35■□□□□ 0.85
CD44-203ENST00000278386 ZMYM3Q14202 1370 aa20.34■□□□□ 0.85
CD44-203ENST00000278386 CERKQ8TCT0 537 aa20.34■□□□□ 0.85
CD44-203ENST00000278386 GGT6Q6P531 493 aa20.33■□□□□ 0.85
CD44-203ENST00000278386 CAMSAP1Q5T5Y3 1602 aa20.33■□□□□ 0.84
CD44-203ENST00000278386 RTEL1-TNFRSF6BF6WH68 1400 aa20.33■□□□□ 0.84
CD44-203ENST00000278386 NCOA1Q15788 1441 aa20.31■□□□□ 0.84
CD44-203ENST00000278386 ARHGEF5Q12774 1597 aa20.3■□□□□ 0.84
CD44-203ENST00000278386 CEP170BQ9Y4F5 1589 aaPredicted RBP20.3■□□□□ 0.84
CD44-203ENST00000278386 PTPRTO14522 1441 aa20.3■□□□□ 0.84
CD44-203ENST00000278386 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
CD44-203ENST00000278386 LOC105371045A0A1W2PR82 267 aa20.28■□□□□ 0.84
CD44-203ENST00000278386 PTPRKQ15262 1439 aa20.27■□□□□ 0.84
CD44-203ENST00000278386 DHX29Q7Z478 1369 aaKnown RBP20.26■□□□□ 0.83
CD44-203ENST00000278386 KDM5DQ9BY66 1539 aa20.26■□□□□ 0.83
CD44-203ENST00000278386 FAM135AQ9P2D6 1515 aa20.23■□□□□ 0.83
CD44-203ENST00000278386 PPP6R1Q9UPN7 881 aa20.22■□□□□ 0.83
CD44-203ENST00000278386 MAP3K1Q13233 1512 aa20.22■□□□□ 0.83
CD44-203ENST00000278386 KIF3BO15066 747 aa20.21■□□□□ 0.83
CD44-203ENST00000278386 RSPH4AQ5TD94 716 aa20.21■□□□□ 0.83
CD44-203ENST00000278386 PLA2R1Q13018 1463 aa20.21■□□□□ 0.83
CD44-203ENST00000278386 MAST1Q9Y2H9 1570 aa20.21■□□□□ 0.83
CD44-203ENST00000278386 POLR1AO95602 1720 aaPredicted RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms